ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl32b04 |
|---|---|
| Clone Library Name | barley_pub |
>TLN1_MOUSE (P26039) Talin-1| Length = 2541 Score = 32.0 bits (71), Expect = 0.82 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 3/74 (4%) Frame = -1 Query: 432 KASMDWQQKRPEMKVCPICGKNVGLSTSSLKLHLQKAHRRLSQGSVDSAMTM--EIQKSI 259 KAS+ Q + C KN+G + + L+ QKA +DSA+++ ++K + Sbjct: 1005 KASVPTIQDQASAMQLSQCAKNLGTALAELRTAAQKAQEACGPLEMDSALSVVQNLEKDL 1064 Query: 258 ESLR-ISRGGSLSP 220 + ++ +R G L P Sbjct: 1065 QEIKAAARDGKLKP 1078
>TLN1_HUMAN (Q9Y490) Talin-1| Length = 2541 Score = 31.6 bits (70), Expect = 1.1 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 3/74 (4%) Frame = -1 Query: 432 KASMDWQQKRPEMKVCPICGKNVGLSTSSLKLHLQKAHRRLSQGSVDSAMTM--EIQKSI 259 KAS+ Q + C KN+G + + L+ QKA +DSA+++ ++K + Sbjct: 1005 KASVPTIQDQASAMQLSQCAKNLGTALAELRTAAQKAQEACGPLEMDSALSVVQNLEKDL 1064 Query: 258 ESLR-ISRGGSLSP 220 + ++ +R G L P Sbjct: 1065 QEVKAAARDGKLKP 1078
>RECO_LACAC (Q5FJT8) DNA repair protein recO (Recombination protein O)| Length = 250 Score = 31.2 bits (69), Expect = 1.4 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 7/76 (9%) Frame = -1 Query: 405 RPEMKVCPICGKNVGLSTSSLKL-------HLQKAHRRLSQGSVDSAMTMEIQKSIESLR 247 +PE+ C ICGK G+ S+KL H RL ++A I ++I L Sbjct: 150 KPELSHCVICGKEKGIFDYSIKLGGVICSDHFNVVESRLHLKPKETA----ILRTIGLLP 205 Query: 246 ISRGGSLSPSQKLAKA 199 I R G++ S++ +A Sbjct: 206 IERLGTIKVSEESKRA 221
>PEX6_RAT (P54777) Peroxisome assembly factor 2 (PAF-2) (Peroxisomal-type| ATPase 1) (Peroxin-6) (Peroxisomal biogenesis factor 6) Length = 978 Score = 30.0 bits (66), Expect = 3.1 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = +2 Query: 101 CPKVGLYSLQYKCANLCTYKERTTDQKLSS 190 C ++GL+ L+ C++LC RT + KL + Sbjct: 484 CSRLGLHLLKVPCSSLCADSSRTVETKLQT 513
>PEX6_MOUSE (Q99LC9) Peroxisome assembly factor 2 (PAF-2) (Peroxisomal-type| ATPase 1) (Peroxin-6) (Peroxisomal biogenesis factor 6) Length = 981 Score = 29.6 bits (65), Expect = 4.1 Identities = 15/55 (27%), Positives = 27/55 (49%) Frame = +2 Query: 101 CPKVGLYSLQYKCANLCTYKERTTDQKLSSLANALASFWEGLRLPPRLIRSDSID 265 C ++GL+ L+ C++LC R + KL A+F R P ++ ++D Sbjct: 485 CSRLGLHLLKVPCSSLCADSSRAVETKLQ------ATFSRARRCRPAVLLLTAVD 533
>HD_MOUSE (P42859) Huntingtin (Huntington disease protein homolog) (HD protein)| Length = 3119 Score = 28.9 bits (63), Expect = 6.9 Identities = 18/65 (27%), Positives = 26/65 (40%) Frame = -3 Query: 196 RQRAQLLICCSFLVCTQVGTLVL**IQPNFRAQRVRLRCNISNKKCSCFQVQILGIRPNA 17 R+ +C L+ T GT N +Q L N S +C ++ +RP Sbjct: 1283 REPMMATVCVQQLLKTLFGT--------NLASQFDGLSSNPSKSQCRAQRLGSSSVRPGL 1334 Query: 16 YRYCF 2 Y YCF Sbjct: 1335 YHYCF 1339
>HD_RAT (P51111) Huntingtin (Huntington disease protein homolog) (HD protein)| Length = 3110 Score = 28.9 bits (63), Expect = 6.9 Identities = 18/65 (27%), Positives = 26/65 (40%) Frame = -3 Query: 196 RQRAQLLICCSFLVCTQVGTLVL**IQPNFRAQRVRLRCNISNKKCSCFQVQILGIRPNA 17 R+ +C L+ T GT N +Q L N S +C ++ +RP Sbjct: 1274 REPMMATVCVQQLLKTLFGT--------NLASQFDGLSSNPSKSQCRAQRLGSSSVRPGL 1325 Query: 16 YRYCF 2 Y YCF Sbjct: 1326 YHYCF 1330
>SRPR_PSEPU (Q9R9T9) HTH-type transcriptional regulator srpR (Solvent efflux| pump srpABC operon corepressor) Length = 213 Score = 28.9 bits (63), Expect = 6.9 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +2 Query: 164 RTTDQKLSSLANALASFWEGLRLPPRLI 247 R+ DQ+ + AL SFW LR PPR + Sbjct: 172 RSKDQQAQIIKVALGSFWALLREPPRFL 199
>ZN250_MOUSE (Q7TNU6) Zinc finger protein 250 (Zinc finger protein 647)| Length = 535 Score = 28.5 bits (62), Expect = 9.1 Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 1/99 (1%) Frame = -1 Query: 390 VCPICGKNVGLSTSSLKLHLQKAHRRLSQGSVDSAMTMEIQKS-IESLRISRGGSLSPSQ 214 VCP+CGK ST L+ H + G + T ++++ ++ R+ G Sbjct: 287 VCPLCGKAFNHST-VLRSHQRVHTGEKPHGCSECGKTFSVKRTLLQHQRVHTGEKPYTCS 345 Query: 213 KLAKAFANEXXXXXXXXXXXVHRLAHLYCSEYNPTLGHR 97 + KAF++ + CSE T HR Sbjct: 346 ECGKAFSDRSVLIQHHNVHTGEK--PYECSECGKTFSHR 382
>YNR6_YEAST (P53882) Hypothetical 67.4 kDa protein in RPS3-PSD1 intergenic| region Length = 636 Score = 28.5 bits (62), Expect = 9.1 Identities = 18/54 (33%), Positives = 29/54 (53%) Frame = +2 Query: 167 TTDQKLSSLANALASFWEGLRLPPRLIRSDSIDFWISMVMALSTLPCDSRLCAF 328 +T LSS A +L+S W L P L+ S S+ ++LS+ D++L +F Sbjct: 145 STTPTLSSSATSLSSSWSSLSSPSSLLVSSSLS------LSLSSSYSDTKLFSF 192
>ZBED3_HUMAN (Q96IU2) Zinc finger BED domain-containing protein 3| Length = 234 Score = 28.5 bits (62), Expect = 9.1 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 6/36 (16%) Frame = -1 Query: 387 CPICGKNVG------LSTSSLKLHLQKAHRRLSQGS 298 C +CG+ VG TS+L HL+ AHRR + S Sbjct: 69 CRLCGEQVGRGPGFHAGTSALWRHLRSAHRRELESS 104
>GPR88_RAT (Q9ESP4) Probable G-protein coupled receptor 88 (Striatum-specific| G-protein coupled receptor) Length = 384 Score = 28.5 bits (62), Expect = 9.1 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 6/35 (17%) Frame = -3 Query: 232 EPQPFPEAGQGVRQRAQL------LICCSFLVCTQ 146 +PQP P A Q R + +L L+CC FL+ TQ Sbjct: 264 QPQPLPAALQPRRAQRRLSGLSVLLLCCVFLLATQ 298
>GPR88_MOUSE (Q9EPB7) Probable G-protein coupled receptor 88 (Striatum-specific| G-protein coupled receptor) Length = 384 Score = 28.5 bits (62), Expect = 9.1 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 6/35 (17%) Frame = -3 Query: 232 EPQPFPEAGQGVRQRAQL------LICCSFLVCTQ 146 +PQP P A Q R + +L L+CC FL+ TQ Sbjct: 264 QPQPLPAALQPRRAQRRLSGLSVLLLCCVFLLATQ 298 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,092,315 Number of Sequences: 219361 Number of extensions: 972877 Number of successful extensions: 3136 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2966 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3135 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
