ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbastl32b03 |
|---|---|
| Clone Library Name | barley_pub |
>RCN1_MOUSE (Q05186) Reticulocalbin-1 precursor| Length = 325 Score = 35.4 bits (80), Expect = 0.090 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 3/91 (3%) Frame = -2 Query: 439 DHVRKMMKDRGVRKEPGRSWIEVKNVVHAFFVGD--RLHPLA-HQIYKYLADLDDRLAKI 269 D+V K+ KD K+ SW E K + +++G+ H + H +K + D+R K Sbjct: 112 DNVAKVWKDYDRDKDEKISWEEYKQATYGYYLGNPAEFHDSSDHHTFKKMLPRDERRFKA 171 Query: 268 GYIQGNYFLFHEKEKEQKDPTAFVHSEKLAV 176 + G+ E+ P F H +++ V Sbjct: 172 SDLDGDLTATREEFTAFLHPEEFEHMKEIVV 202
>RCN1_HUMAN (Q15293) Reticulocalbin-1 precursor| Length = 331 Score = 35.4 bits (80), Expect = 0.090 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 3/91 (3%) Frame = -2 Query: 439 DHVRKMMKDRGVRKEPGRSWIEVKNVVHAFFVGD--RLHPLA-HQIYKYLADLDDRLAKI 269 D+V K+ KD K+ SW E K + +++G+ H + H +K + D+R K Sbjct: 118 DNVAKVWKDYDRDKDDKISWEEYKQATYGYYLGNPAEFHDSSDHHTFKKMLPRDERRFKA 177 Query: 268 GYIQGNYFLFHEKEKEQKDPTAFVHSEKLAV 176 + G+ E+ P F H +++ V Sbjct: 178 ADLNGDLTATREEFTAFLHPEEFEHMKEIVV 208
>KSGA_DESPS (Q6AL71) Dimethyladenosine transferase (EC 2.1.1.-)| (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) Length = 295 Score = 32.7 bits (73), Expect = 0.59 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Frame = -2 Query: 328 PLAHQI-YKYLADLDDRLAKIGYIQGNYFLFHEKEKEQKDPTAFVHSEKLAVAFGLMSLP 152 P+AHQ + Y ++D+ + K +HE+E++ D +H + L V FG ++ Sbjct: 61 PMAHQAKHVYGIEIDNGIIK----------YHEEEQDLPDNVTLIHQDVLKVGFGDLAEK 110 Query: 151 PSMPLRVIKNL 119 L+++ NL Sbjct: 111 CGGKLKILANL 121
>RNBR_CAPCA (P79351) Brain ribonuclease (EC 3.1.27.-) (BRB)| Length = 151 Score = 31.2 bits (69), Expect = 1.7 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +1 Query: 244 ENSSLVCTLFWLTCRLGQPNTCKSDEPMGATDHQQ 348 +N VC+ +TC+ GQPN +S+ M TD +Q Sbjct: 52 DNVKAVCSQKNITCKNGQPNCYQSNSTMNITDCRQ 86
>Y1686_STRPN (Q54728) Hypothetical oxidoreductase SP1686 (EC 1.-.-.-)| Length = 367 Score = 31.2 bits (69), Expect = 1.7 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%) Frame = -2 Query: 259 QGNYFLFHEKEKEQKDPTAFVHSEKL--AVAFG 167 Q +YFL HE ++E D T HS ++ A+A+G Sbjct: 265 QESYFLIHESQEEDDDRTRIYHSTEMDGAIAYG 297
>ACSA2_ACEXY (Q59167) Cellulose synthase 2 [Includes: Cellulose synthase| catalytic subunit [UDP-forming] (EC 2.4.1.12); Cyclic di-GMP-binding domain (Cellulose synthase 2 regulatory domain)] Length = 1596 Score = 30.4 bits (67), Expect = 2.9 Identities = 16/51 (31%), Positives = 24/51 (47%) Frame = +2 Query: 323 QWVQPITNKESMNHILYFNPATAGFFSDSSVFHHLSDVIPASPFPITAYAF 475 +W Q + +M+H L+ P S + ++I ASPF I YAF Sbjct: 391 RWQQRLCYLSAMSHFLFAIPRLVFLASPLAFLFLGQNIIAASPFAILVYAF 441
>RTN4R_MOUSE (Q99PI8) Reticulon-4 receptor precursor (Nogo receptor) (NgR)| (Nogo-66 receptor) Length = 473 Score = 30.0 bits (66), Expect = 3.8 Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 6/109 (5%) Frame = -2 Query: 421 MKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAHQIYKYLADLDDRLAKIGYIQGNYFL 242 ++D ++ P ++ ++ N+ H F G+R+ + ++ L LD L Sbjct: 161 LQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLD------------RLL 208 Query: 241 FHEKEKEQKDPTAFVHSEKLAVAF----GLMSLPPS--MPLRVIKNLRV 113 H+ + P AF +L + L LP MPLR ++ LR+ Sbjct: 209 LHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLMPLRSLQYLRL 257
>CY561_SHEEP (Q95204) Cytochrome b561 (Cytochrome b-561)| Length = 252 Score = 29.6 bits (65), Expect = 5.0 Identities = 11/27 (40%), Positives = 19/27 (70%) Frame = +2 Query: 161 HQSKGHS*LLAMDKSCGVLLFFLFFME 241 H+ KG++ L ++ CG+L+F LFF + Sbjct: 110 HRKKGYADLYSLHSWCGILVFALFFAQ 136
>CY561_MOUSE (Q60720) Cytochrome b561 (Cytochrome b-561)| Length = 250 Score = 29.6 bits (65), Expect = 5.0 Identities = 10/27 (37%), Positives = 20/27 (74%) Frame = +2 Query: 161 HQSKGHS*LLAMDKSCGVLLFFLFFME 241 H+ KG++ L ++ CG+L+F L+F++ Sbjct: 108 HKKKGYADLYSLHSWCGILVFVLYFVQ 134
>CY561_HUMAN (P49447) Cytochrome b561 (Cytochrome b-561)| Length = 251 Score = 29.6 bits (65), Expect = 5.0 Identities = 10/27 (37%), Positives = 20/27 (74%) Frame = +2 Query: 161 HQSKGHS*LLAMDKSCGVLLFFLFFME 241 H+ KG++ L ++ CG+L+F L+F++ Sbjct: 109 HRKKGYADLYSLHSWCGILVFVLYFVQ 135
>CY561_BOVIN (P10897) Cytochrome b561 (Cytochrome b-561)| Length = 252 Score = 29.6 bits (65), Expect = 5.0 Identities = 11/27 (40%), Positives = 19/27 (70%) Frame = +2 Query: 161 HQSKGHS*LLAMDKSCGVLLFFLFFME 241 H+ KG++ L ++ CG+L+F LFF + Sbjct: 110 HRKKGYADLYSLHSWCGILVFALFFAQ 136
>KCNH5_MOUSE (Q920E3) Potassium voltage-gated channel subfamily H member 5| (Voltage-gated potassium channel subunit Kv10.2) (Ether-a-go-go potassium channel 2) (Eag2) Length = 988 Score = 29.3 bits (64), Expect = 6.5 Identities = 18/56 (32%), Positives = 28/56 (50%) Frame = -1 Query: 482 LFQMHMLLWEMGLQGSRQKDDERQRSQKRTRP*LD*SKECGSCFLCW*SVAPIGSS 315 LFQ E+ +QGS Q D ER + Q +RP + + G+ + + PI +S Sbjct: 709 LFQKFKQQKELRIQGSAQSDPERSQLQVESRPLQNGASITGTSVVTVSQITPIQTS 764
>CP17A_ORYLA (P70085) Cytochrome P450 17A1 (EC 1.14.99.9) (CYPXVII) (P450-C17)| (P450c17) (Steroid 17-alpha-hydroxylase/17,20 lyase) Length = 517 Score = 29.3 bits (64), Expect = 6.5 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 5/81 (6%) Frame = -2 Query: 337 RLHPLAHQIYKYLADLDDRLAKIGYIQG-----NYFLFHEKEKEQKDPTAFVHSEKLAVA 173 R+ P+A + ++A D L +G N + H EKE +P F L+ Sbjct: 371 RIRPVAPLLIPHVALSDTSLGDFTVRKGTRVVINLWSLHHDEKEWTNPDLFNPGRFLSAD 430 Query: 172 FGLMSLPPSMPLRVIKNLRVC 110 ++LP S L LRVC Sbjct: 431 GSSLTLPSSSYLPFGAGLRVC 451
>RTN4R_MACFA (Q9N0E3) Reticulon-4 receptor precursor (Nogo receptor) (NgR)| (Nogo-66 receptor) Length = 473 Score = 28.9 bits (63), Expect = 8.5 Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 6/109 (5%) Frame = -2 Query: 421 MKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAHQIYKYLADLDDRLAKIGYIQGNYFL 242 ++D ++ P ++ ++ N+ H F G+R+ + + ++ L LD L Sbjct: 161 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD------------RLL 208 Query: 241 FHEKEKEQKDPTAFVHSEKLAVAF----GLMSLPPS--MPLRVIKNLRV 113 H+ P AF +L + L +LP PLR ++ LR+ Sbjct: 209 LHQNRVAHVHPHAFRDLGRLMTLYLFRNNLSALPAEALAPLRALQYLRL 257
>RTN4R_HUMAN (Q9BZR6) Reticulon-4 receptor precursor (Nogo receptor) (NgR)| (Nogo-66 receptor) Length = 473 Score = 28.9 bits (63), Expect = 8.5 Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 6/109 (5%) Frame = -2 Query: 421 MKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAHQIYKYLADLDDRLAKIGYIQGNYFL 242 ++D ++ P ++ ++ N+ H F G+R+ + + ++ L LD L Sbjct: 161 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD------------RLL 208 Query: 241 FHEKEKEQKDPTAFVHSEKLAVAF----GLMSLPPS--MPLRVIKNLRV 113 H+ P AF +L + L +LP PLR ++ LR+ Sbjct: 209 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 257
>CESAA_ARATH (Q9SKJ5) Probable cellulose synthase A catalytic subunit 10| [UDP-forming] (EC 2.4.1.12) (AtCesA-10) (AtCesA-13) Length = 1065 Score = 28.9 bits (63), Expect = 8.5 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 4/74 (5%) Frame = +3 Query: 63 LPMTSEVNFIQVWQSLQTRRFLMTLRGIEGGKLINPKATAN----FSLWTKAVGSFCSFS 230 LPM+ V+F + R ++ LR I G ++ + T ++LW +V F+ Sbjct: 245 LPMSRVVHFPSA--RMTPYRIVIVLRLIILGVFLHYRTTHPVKDAYALWLTSVICEIWFA 302 Query: 231 FSWKRK*FPCMYPI 272 FSW FP YPI Sbjct: 303 FSWLLDQFPKWYPI 316 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,085,243 Number of Sequences: 219361 Number of extensions: 1450989 Number of successful extensions: 4177 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 4094 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4176 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3754426130 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
