ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl32a05 |
|---|---|
| Clone Library Name | barley_pub |
>FRU_DROME (Q8IN81) Sex determination protein fruitless| Length = 955 Score = 31.6 bits (70), Expect = 0.48 Identities = 15/47 (31%), Positives = 23/47 (48%) Frame = +2 Query: 131 CTEKQFPLQIGSVICSRQRGAPWRSTSHLPGHATTPSCPSSVAKAPP 271 C K L + ++ CSRQ+ + H P H + CP+ A +PP Sbjct: 712 CEYKCKELNMRAIRCSRQQHMMSHYSPHHPHHRSLIDCPAEAAYSPP 758
>SYA_STRMU (Q8CWY0) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 872 Score = 31.2 bits (69), Expect = 0.62 Identities = 17/55 (30%), Positives = 27/55 (49%) Frame = -2 Query: 187 SLPAADDRPYLKRELLLSAYQYGRSVAMGHN*V*FCPFLYTFLFLICKASDFYFP 23 +LP + R Y+ R LL A +GR + + PFLY + + K + Y+P Sbjct: 295 ALPGNEGRGYVLRRLLRRAVMHGRRLGINE------PFLYKLVPTVGKIMESYYP 343
>UNC18_CAEEL (P34815) Putative acetylcholine regulator unc-18 (Uncoordinated| protein 18) Length = 591 Score = 30.8 bits (68), Expect = 0.81 Identities = 17/55 (30%), Positives = 28/55 (50%) Frame = -1 Query: 308 LSLLNLVRHPECLEGLLPLKRDTTESLRDLADVTWTAKELLFACCR*QTLSEEGI 144 +SL +V H + + PLK+ S ++ V A +L +CC+ + EEGI Sbjct: 1 MSLKQIVGHKLLNDVIRPLKKGDGRSAWNVLIVDTLAMRMLSSCCKMHNIMEEGI 55
>VG48_SHV21 (Q01033) Hypothetical gene 48 protein| Length = 797 Score = 30.4 bits (67), Expect = 1.1 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Frame = -1 Query: 299 LNLVRHPECLEGLLPLKRDTTESLRDLADVTWTAKELLFAC-CR*QTLSEEG 147 LNL+ EC +GL L R E ++D DV + +E+ + C R L EEG Sbjct: 77 LNLI---ECTQGLKFLIRSLYEKIKDQCDVKSSIREIFYDCKARLLLLLEEG 125
>DHH1_SCHPO (Q09181) Putative ATP-dependent RNA helicase ste13 (EC 3.6.1.-)| Length = 485 Score = 29.3 bits (64), Expect = 2.4 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 3/51 (5%) Frame = +1 Query: 43 LYKSRKEMCTKTGKITLSCDPSLHFFHTGMH*EAIP---SSDRVCHLQQAK 186 LY+ E+ T+ I S DPSL+ F G + P S+D+V QQAK Sbjct: 393 LYRIENELGTEIQPIPPSIDPSLYVFPNGDYQIPRPLTASADQVLAAQQAK 443
>PDLI5_HUMAN (Q96HC4) PDZ and LIM domain protein 5 (Enigma homolog) (Enigma-like| PDZ and LIM domains protein) Length = 595 Score = 28.5 bits (62), Expect = 4.0 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%) Frame = +2 Query: 149 PLQIGSVICSRQRGAPWRSTSHLPGHATTPS--CPSSVAKAPPSILDVS 289 P GSV + P S++ P HATT S PS VA P + S Sbjct: 128 PRPFGSVSSPKVTSIPSPSSAFTPAHATTSSHASPSPVAAVTPPLFAAS 176
>SYA_STRP8 (Q8P0E6) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 872 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/55 (27%), Positives = 26/55 (47%) Frame = -2 Query: 187 SLPAADDRPYLKRELLLSAYQYGRSVAMGHN*V*FCPFLYTFLFLICKASDFYFP 23 +LP + R Y+ R LL A +GR + + FLY + + + + Y+P Sbjct: 295 ALPGNEGRGYVLRRLLRRAVMHGRRLGINET------FLYKLVLTVGQIMESYYP 343
>LARGE_CHICK (Q66PG3) Glycosyltransferase-like protein LARGE1 (EC 2.4.-.-)| (Acetylglucosaminyltransferase-like 1A) Length = 756 Score = 28.1 bits (61), Expect = 5.3 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 3/51 (5%) Frame = +1 Query: 139 EAIPSSDRVCHLQQAKRSSLAVHVTSARSRNDSV---VSLFSGKSPSKHSG 282 E+ P S R Q R SL V + N + +SL G+SPS H G Sbjct: 46 ESQPHSPRYTASSQRDRESLEVRMREVEEENRVLRKQLSLAQGRSPSHHRG 96
>CD2L5_MOUSE (Q69ZA1) Cell division cycle 2-like protein kinase 5 (EC 2.7.11.22)| (CDC2-related protein kinase 5) Length = 1511 Score = 28.1 bits (61), Expect = 5.3 Identities = 23/59 (38%), Positives = 29/59 (49%) Frame = +1 Query: 214 SARSRNDSVVSLFSGKSPSKHSGCLTRFNSDRAASTLSSITVS*LNLSRSLAARTEHAK 390 SA+SR+ S S S+HS +R R+ S SSI+ S L L SLAA K Sbjct: 407 SAKSRSRSPYS-------SRHSRSRSRHRLSRSRSRHSSISPSTLTLKSSLAAELNKNK 458
>RBP17_MOUSE (Q99NF8) Ran-binding protein 17| Length = 1088 Score = 28.1 bits (61), Expect = 5.3 Identities = 19/56 (33%), Positives = 24/56 (42%) Frame = -1 Query: 362 LLDRLSYDTVMEERVLAALSLLNLVRHPECLEGLLPLKRDTTESLRDLADVTWTAK 195 L L T + ER+ A +LL L+ PECL L T S L T +K Sbjct: 14 LCTHLYVGTDLTERIEAEKALLELIDSPECLSKCQLLLEQGTTSYAQLLAATCLSK 69
>CEA20_HUMAN (Q6UY09) Carcinoembryonic antigen-related cell adhesion molecule 20| precursor Length = 585 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/53 (28%), Positives = 22/53 (41%) Frame = +2 Query: 155 QIGSVICSRQRGAPWRSTSHLPGHATTPSCPSSVAKAPPSILDVSQDSTVIEQ 313 ++G +C R P R T+ P H T+ P PS +S + I Q Sbjct: 464 ELGYFLCIRNARRPSRKTTEDPSHETSQPIPKEEHPTEPSSESLSPEYCNISQ 516
>PDLI5_MOUSE (Q8CI51) PDZ and LIM domain protein 5 (Enigma homolog) (Enigma-like| PDZ and LIM domains protein) Length = 590 Score = 27.7 bits (60), Expect = 6.9 Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 2/80 (2%) Frame = +2 Query: 56 EKKCVQKRAKLHLVVTHRYTSSILVCTEKQFPLQIGSVICSRQRGAPWRSTSHLPGHATT 235 E K V K + + TS+ + K P GSV + P S++ P HA T Sbjct: 98 EPKEVVKPVPITSPAVSKVTSTTNMAYNKA-PRPFGSVSSPKVTSIPSPSSAFTPAHAAT 156 Query: 236 PS--CPSSVAKAPPSILDVS 289 S P+ VA A P L S Sbjct: 157 SSHASPTPVAAATPLHLSAS 176
>FOXP1_MOUSE (P58462) Forkhead box protein P1 (Forkhead-related transcription| factor 1) Length = 705 Score = 27.7 bits (60), Expect = 6.9 Identities = 21/83 (25%), Positives = 37/83 (44%) Frame = +2 Query: 56 EKKCVQKRAKLHLVVTHRYTSSILVCTEKQFPLQIGSVICSRQRGAPWRSTSHLPGHATT 235 E + + + +L ++TH + S Q PL + S + + + A S LP TT Sbjct: 380 ELQLAKDKERLQAMMTHLHVKSTEPKAAPQ-PLNLVSSV-TLSKSASEASPQSLPHTPTT 437 Query: 236 PSCPSSVAKAPPSILDVSQDSTV 304 P+ P + PS++ + TV Sbjct: 438 PTAPLTPVTQGPSVITTTSMHTV 460
>FETUB_MOUSE (Q9QXC1) Fetuin-B precursor (IRL685)| Length = 388 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/33 (36%), Positives = 17/33 (51%) Frame = +2 Query: 200 RSTSHLPGHATTPSCPSSVAKAPPSILDVSQDS 298 R S H T P CPS + + PS L+ + +S Sbjct: 143 RPVSKRKTHTTCPDCPSPIDLSNPSALEAATES 175
>NFRKB_MOUSE (Q6PIJ4) Nuclear factor related to kappa-B-binding protein| (DNA-binding protein R kappa-B) Length = 1296 Score = 27.7 bits (60), Expect = 6.9 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 2/75 (2%) Frame = +2 Query: 113 TSSILVCTEKQFPLQIGSVI--CSRQRGAPWRSTSHLPGHATTPSCPSSVAKAPPSILDV 286 +S +L+ + P Q+G+++ S Q ++T+ + H+++ P A PS+ V Sbjct: 755 SSGVLLVSSPTMP-QLGTMLSPASIQTPPSSQATARVVSHSSSAGLPQVRVVAQPSLPAV 813 Query: 287 SQDSTVIEQRAPFLP 331 SQ S Q P +P Sbjct: 814 SQQSVGPAQPLPQMP 828
>GRK1_CAEEL (Q09537) G protein-coupled receptor kinase 1 (EC 2.7.11.16)| Length = 642 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/37 (37%), Positives = 17/37 (45%) Frame = +2 Query: 194 PWRSTSHLPGHATTPSCPSSVAKAPPSILDVSQDSTV 304 PW+ G T P CP A +LD+ Q STV Sbjct: 483 PWKKME--AGKVTPPFCPDPRAVYAKDVLDIEQFSTV 517
>FOXP1_HUMAN (Q9H334) Forkhead box protein P1| Length = 677 Score = 27.7 bits (60), Expect = 6.9 Identities = 21/83 (25%), Positives = 37/83 (44%) Frame = +2 Query: 56 EKKCVQKRAKLHLVVTHRYTSSILVCTEKQFPLQIGSVICSRQRGAPWRSTSHLPGHATT 235 E + + + +L ++TH + S Q PL + S + + + A S LP TT Sbjct: 352 ELQLAKDKERLQAMMTHLHVKSTEPKAAPQ-PLNLVSSV-TLSKSASEASPQSLPHTPTT 409 Query: 236 PSCPSSVAKAPPSILDVSQDSTV 304 P+ P + PS++ + TV Sbjct: 410 PTAPLTPVTQGPSVITTTSMHTV 432
>GRK1_CAEBR (Q622Z7) G protein-coupled receptor kinase 1 (EC 2.7.11.16)| Length = 640 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/37 (37%), Positives = 17/37 (45%) Frame = +2 Query: 194 PWRSTSHLPGHATTPSCPSSVAKAPPSILDVSQDSTV 304 PW+ G T P CP A +LD+ Q STV Sbjct: 482 PWKKME--AGKVTPPFCPDPRAVYAKDVLDIEQFSTV 516
>ZAP1_YEAST (P47043) Zinc-responsive transcriptional regulator ZAP1| Length = 880 Score = 27.3 bits (59), Expect = 9.0 Identities = 23/90 (25%), Positives = 39/90 (43%) Frame = +1 Query: 31 KNLRLYKSRKEMCTKTGKITLSCDPSLHFFHTGMH*EAIPSSDRVCHLQQAKRSSLAVHV 210 ++L+++ K KT K S + +L HT H P +C+ + A SSL +H+ Sbjct: 757 RHLKVHSKYKPYKCKTCKRCFSSEETL-VQHTRTHSGEKPYKCHICNKKFAISSSLKIHI 815 Query: 211 TSARSRNDSVVSLFSGKSPSKHSGCLTRFN 300 + +G+ P + C RFN Sbjct: 816 RT-----------HTGEKPLQCKICGKRFN 834
>YAW6_SCHPO (Q10181) Hypothetical protein C3F10.06c in chromosome I| Length = 453 Score = 27.3 bits (59), Expect = 9.0 Identities = 17/42 (40%), Positives = 22/42 (52%) Frame = +2 Query: 113 TSSILVCTEKQFPLQIGSVICSRQRGAPWRSTSHLPGHATTP 238 T SIL C E+Q +I S++ S R +P S S L TP Sbjct: 255 TESILTCPEEQLEQKI-SLLLSSTRNSPTMSNSSLTHLLPTP 295
>LPHN3_BOVIN (O97827) Latrophilin-3 precursor| Length = 1580 Score = 27.3 bits (59), Expect = 9.0 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 4/76 (5%) Frame = +2 Query: 149 PLQIGSVICSRQRGAPWRSTSHLPGHATTPSCPS----SVAKAPPSILDVSQDSTVIEQR 316 PL GS S R+T+ PG +TTPS S + P+I ++ +T + Sbjct: 500 PLGTGSTTTS----TTLRTTTWSPGRSTTPSVSGRRNRSTSTPSPAIEVLNDITTHVPSA 555 Query: 317 APFLP*LCHSSTYLEA 364 +P +P L S +EA Sbjct: 556 SPQIPALEESCEAVEA 571
>COBA1_BOVIN (Q28083) Collagen alpha-1(XI) chain precursor (Fragment)| Length = 911 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/36 (36%), Positives = 18/36 (50%) Frame = -2 Query: 208 RGPPRSSSLPAADDRPYLKRELLLSAYQYGRSVAMG 101 RGPP LP AD P +L+ ++YG + G Sbjct: 238 RGPPGRPGLPGADGLPGPPGTMLVLPFRYGGDSSKG 273
>COBA1_HUMAN (P12107) Collagen alpha-1(XI) chain precursor| Length = 1806 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/36 (36%), Positives = 18/36 (50%) Frame = -2 Query: 208 RGPPRSSSLPAADDRPYLKRELLLSAYQYGRSVAMG 101 RGPP LP AD P +L+ ++YG + G Sbjct: 471 RGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKG 506
>POLG_ZYMVR (Q89330) Genome polyprotein [Contains: P1 proteinase (N-terminal| protein); Helper component proteinase (EC 3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2 (6K2); Viral ge Length = 3083 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/36 (36%), Positives = 18/36 (50%) Frame = +1 Query: 1 EKTYMCSKGNKNLRLYKSRKEMCTKTGKITLSCDPS 108 EK + C + NKN L+ C+ TLS DP+ Sbjct: 1671 EKIWKCIQENKNDALFGRLSSACSTKVSYTLSTDPA 1706
>MDHC_MESCR (O24047) Malate dehydrogenase, cytoplasmic (EC 1.1.1.37)| Length = 332 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/51 (27%), Positives = 25/51 (49%) Frame = +1 Query: 175 QQAKRSSLAVHVTSARSRNDSVVSLFSGKSPSKHSGCLTRFNSDRAASTLS 327 Q A + + V + + N ++ F+ P K+ CLTR + +RA +S Sbjct: 119 QHAAPNCKVLVVANPANTNALILKEFAPSIPEKNISCLTRLDHNRALGQIS 169
>COBA1_MOUSE (Q61245) Collagen alpha-1(XI) chain precursor| Length = 1804 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/36 (36%), Positives = 18/36 (50%) Frame = -2 Query: 208 RGPPRSSSLPAADDRPYLKRELLLSAYQYGRSVAMG 101 RGPP LP AD P +L+ ++YG + G Sbjct: 469 RGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKG 504
>MFS14_MAIZE (Q01900) MFS14 protein precursor| Length = 126 Score = 27.3 bits (59), Expect = 9.0 Identities = 10/25 (40%), Positives = 15/25 (60%) Frame = +2 Query: 164 SVICSRQRGAPWRSTSHLPGHATTP 238 S +C+ APW S++ P AT+P Sbjct: 71 SAVCTSAPAAPWASSTACPAGATSP 95 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,296,642 Number of Sequences: 219361 Number of extensions: 1226293 Number of successful extensions: 3552 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 3434 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3552 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 1370455656 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
