ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl32a03 |
|---|---|
| Clone Library Name | barley_pub |
>TRM1_ARATH (Q9LFU5) Probable N(2),N(2)-dimethylguanosine tRNA| methyltransferase (EC 2.1.1.32) (tRNA(guanine-26,N(2)-N(2)) methyltransferase) (tRNA 2,2-dimethylguanosine-26 methyltransferase) (tRNA(m(2,2)G26)dimethyltransferase) Length = 586 Score = 52.0 bits (123), Expect = 7e-07 Identities = 25/45 (55%), Positives = 31/45 (68%), Gaps = 3/45 (6%) Frame = -2 Query: 457 QEPQLQASFSQATEGLV---ARKSPRFLPNPEKHWGPKMKAGRPL 332 +EP QA FS+ L A+K RFLPNPEKHWGPK++AGR + Sbjct: 482 KEPSHQADFSRHVGSLSKAQAKKVARFLPNPEKHWGPKIRAGRTI 526
>TRM2_ARATH (Q9SRU7) Probable N(2),N(2)-dimethylguanosine tRNA| methyltransferase (EC 2.1.1.32) (tRNA(guanine-26,N(2)-N(2)) methyltransferase) (tRNA 2,2-dimethylguanosine-26 methyltransferase) (tRNA(m(2,2)G26)dimethyltransferase) Length = 599 Score = 49.3 bits (116), Expect = 5e-06 Identities = 23/45 (51%), Positives = 30/45 (66%), Gaps = 3/45 (6%) Frame = -2 Query: 457 QEPQLQASFSQATEGLV---ARKSPRFLPNPEKHWGPKMKAGRPL 332 +EP + FS+ L A+K RFLPNPEKHWGPK++AGR + Sbjct: 499 KEPSHEVDFSRHIGSLSKAQAKKVARFLPNPEKHWGPKLRAGRQI 543
>TRM1_HUMAN (Q9NXH9) N(2),N(2)-dimethylguanosine tRNA methyltransferase (EC| 2.1.1.32) (tRNA(guanine-26,N(2)-N(2)) methyltransferase) (tRNA 2,2-dimethylguanosine-26 methyltransferase) (tRNA(m(2,2)G26)dimethyltransferase) Length = 659 Score = 32.7 bits (73), Expect = 0.45 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 3/40 (7%) Frame = -2 Query: 454 EPQLQASFS---QATEGLVARKSPRFLPNPEKHWGPKMKA 344 EP+LQA+F+ A R RF NPE +WGP+ +A Sbjct: 526 EPRLQANFTIREDANPSSRQRGLKRFQANPEANWGPRPRA 565
>TRM1_MOUSE (Q3TX08) N(2),N(2)-dimethylguanosine tRNA methyltransferase (EC| 2.1.1.32) (tRNA(guanine-26,N(2)-N(2)) methyltransferase) (tRNA 2,2-dimethylguanosine-26 methyltransferase) (tRNA(m(2,2)G26)dimethyltransferase) Length = 663 Score = 31.2 bits (69), Expect = 1.3 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%) Frame = -2 Query: 454 EPQLQASFS---QATEGLVARKSPRFLPNPEKHWGPKMKA 344 EP+L+A+F+ A R RF NPE +WGP+ +A Sbjct: 525 EPRLKANFNIREDANPSSRQRGLKRFQANPEANWGPRPRA 564
>RUSC2_HUMAN (Q8N2Y8) RUN and SH3 domain-containing protein 2| Length = 1516 Score = 30.4 bits (67), Expect = 2.3 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 5/50 (10%) Frame = +3 Query: 96 WFSQCKSAGNPFRSEKP-KADQALSVIGMDHI----PLPPTSSWASGSTR 230 W C SA P S++P K DQ + + + LPP SW SG +R Sbjct: 817 WSHSCPSAVRPATSQQPQKEDQKILTLTEYRLHGTGSLPPLGSWRSGLSR 866
>RNH2_PARUW (Q6MDG7) Ribonuclease HII (EC 3.1.26.4) (RNase HII)| Length = 222 Score = 29.3 bits (64), Expect = 5.0 Identities = 12/44 (27%), Positives = 23/44 (52%) Frame = -2 Query: 157 WSAFGFSERKGFPADLHCENHSNLNVCSVNMTIFFAPLRARPEI 26 W +GF++ KG+ +LH E C ++ F P+++ E+ Sbjct: 174 WPGYGFNQHKGYATELHLEALFKQGPCPIHRR-SFDPIKSMLEV 216
>RNH2_HAEDU (Q7VMF2) Ribonuclease HII (EC 3.1.26.4) (RNase HII)| Length = 197 Score = 29.3 bits (64), Expect = 5.0 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = -2 Query: 172 ITDNAWSAFGFSERKGFPADLHCENHSNLNVCSVNMTIFFAPLR 41 I D + +GF++ KG+P LH E + + FAP+R Sbjct: 150 ILDQQFPEYGFAQHKGYPTKLHIEKLAQFGATPFHRK-SFAPVR 192
>IFM3_HUMAN (Q01628) Interferon-induced transmembrane protein 3| (Interferon-inducible protein 1-8U) Length = 133 Score = 29.3 bits (64), Expect = 5.0 Identities = 19/46 (41%), Positives = 24/46 (52%) Frame = +3 Query: 72 TEQTFKLLWFSQCKSAGNPFRSEKPKADQALSVIGMDHIPLPPTSS 209 T QTF FS S G P E K + ++V+G H P PPTS+ Sbjct: 4 TVQTF----FSPVNS-GQPPNYEMLKEEHEVAVLGAPHNPAPPTST 44
>ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 587 Score = 29.3 bits (64), Expect = 5.0 Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 6/89 (6%) Frame = +3 Query: 132 RSEKPKADQALSVIGMDHIPLPPTSSWASGSTRWLRFTPWHETDRTGGASVGTAVKGNYS 311 R + +A +AL+ +D P+ T + ++R+T TGG GT ++G Y+ Sbjct: 276 REDAVEAMKALNGKVLDGSPIEVTLAKPVDKDSYVRYTRG-----TGGR--GTMLQGEYT 328 Query: 312 LSMGSIFS------GLPAFIFGPQCFSGL 380 S+G ++ G P F + PQ ++ + Sbjct: 329 YSLGQVYDPTTTYLGAPVF-YAPQAYAAI 356
>RAPSN_CHICK (O42393) 43 kDa receptor-associated protein of the synapse (RAPsyn)| (Acetylcholine receptor-associated 43 kDa protein) (43 kDa postsynaptic protein) Length = 411 Score = 29.3 bits (64), Expect = 5.0 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = +3 Query: 273 GASVGTAVKGNYSLSMGSIFSGLPAFIFGPQCF 371 G +V + G SLSMG+ F GL F +CF Sbjct: 113 GTTVSLQLNGQVSLSMGNAFLGLSIFQKALECF 145
>POLG_JAEVN (P14403) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 1440 Score = 29.3 bits (64), Expect = 5.0 Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 13/103 (12%) Frame = +3 Query: 45 RGAKKIVIFTEQTFKLLWFSQCKS-------------AGNPFRSEKPKADQALSVIGMDH 185 R A K + T++ F++ W + KS P E P +A + I ++ Sbjct: 820 RSAPKRLSMTQEKFEMGWKAWGKSILFAPELANSTFVVDGPETKECPDEHRAWNSIEIED 879 Query: 186 IPLPPTSSWASGSTRWLRFTPWHETDRTGGASVGTAVKGNYSL 314 TS+ WL+ TD GA +GTAVKG+ ++ Sbjct: 880 FGFGITSTRV-----WLKIRE-ESTDECDGAIIGTAVKGHVAV 916
>RUSC2_MOUSE (Q80U22) RUN and SH3 domain-containing protein 2| Length = 1514 Score = 29.3 bits (64), Expect = 5.0 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 5/50 (10%) Frame = +3 Query: 96 WFSQCKSAGNPFRSEKP-KADQALSVIGMDHI----PLPPTSSWASGSTR 230 W C P S++P K DQ + + + LPP SW SG TR Sbjct: 812 WSHTCPPTVRPATSQQPPKEDQKIPTLAEYRLHGTGSLPPLGSWRSGFTR 861
>PCOC1_RAT (O08628) Procollagen C-endopeptidase enhancer 1 precursor| (Procollagen COOH-terminal proteinase enhancer 1) (Procollagen C-proteinase enhancer 1) (PCPE-1) (Type I procollagen COOH-terminal proteinase enhancer) (Type 1 procollagen C-proteinase e Length = 468 Score = 29.3 bits (64), Expect = 5.0 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Frame = -2 Query: 430 SQATEGLVARKSPRFLPNPEKHWGPKMKAGRPLKILPIDK-L*FPFTAVPTLAPPVRSVS 254 S + G A+ P+ +P+ GPK+K K+ P++K P T +AP S++ Sbjct: 281 SAPSPGEDAQHGPQSRSDPKTGTGPKVKPPSKPKVQPVEKPEGSPATQATPVAPDAPSIT 340 Query: 253 C 251 C Sbjct: 341 C 341
>ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 28.9 bits (63), Expect = 6.6 Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 6/89 (6%) Frame = +3 Query: 132 RSEKPKADQALSVIGMDHIPLPPTSSWASGSTRWLRFTPWHETDRTGGASVGTAVKGNYS 311 R + +A +AL+ +D P+ T + ++R+T TGG GT ++G Y+ Sbjct: 276 REDAVEAMKALNGKVLDGSPIEVTLAKPVDKDSYVRYTRG-----TGGR--GTMLQGEYT 328 Query: 312 LSMGSIFS------GLPAFIFGPQCFSGL 380 S+G ++ G P F + PQ ++ + Sbjct: 329 YSLGQVYDPTTTYLGAPVF-YAPQTYAAI 356
>DNAA_NOCFA (Q5Z3Z8) Chromosomal replication initiator protein dnaA| Length = 662 Score = 28.9 bits (63), Expect = 6.6 Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%) Frame = +1 Query: 238 GSHHGMKP-IARGEQVWARL*KEITVCQWEVFLVVYRPSSL-DPSVFQD*AEILGSSV-- 405 GS G P + R +Q W +L K ITV Q L V PSSL ++ +D E + S+ Sbjct: 22 GSADGSIPAVTRAQQAWLKLVKPITVAQGFALLSV--PSSLAQEAIERDLREPILRSLGR 79 Query: 406 RLNPQL 423 RL PQ+ Sbjct: 80 RLGPQV 85
>DNMT1_CHICK (Q92072) DNA (cytosine-5)-methyltransferase 1 (EC 2.1.1.37) (Dnmt1)| (DNA methyltransferase GgaI) (DNA MTase GgaI) (MCMT) (M.GgaI) Length = 1537 Score = 28.9 bits (63), Expect = 6.6 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 11/66 (16%) Frame = +3 Query: 159 ALSVIGMDHIPLPPTSSWA-----------SGSTRWLRFTPWHETDRTGGASVGTAVKGN 305 AL M HIPL P S W STR LR+T H + G +S G A++G Sbjct: 1334 ALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTSTRKLRYT--HHEKKNGRSSSG-ALRGV 1390 Query: 306 YSLSMG 323 S + G Sbjct: 1391 CSCAEG 1396
>CHH4_PENMO (O97386) Crustacean hyperglycemic hormones 4 precursor (Pm-SGP-IV)| [Contains: CHH precursor-related peptide 4 (CPRP 4); Crustacean hyperglycemic hormone 4 (CHH 4)] Length = 120 Score = 28.9 bits (63), Expect = 6.6 Identities = 21/62 (33%), Positives = 29/62 (46%) Frame = +3 Query: 201 TSSWASGSTRWLRFTPWHETDRTGGASVGTAVKGNYSLSMGSIFSGLPAFIFGPQCFSGL 380 T S S + L +P + R+ AS +A GN+SLS S+F I+ Q L Sbjct: 6 TLSAVSAALLVLAASPSPASARSLDASPSSAFSGNHSLSKRSLFDPACTGIYDRQLLGKL 65 Query: 381 GR 386 GR Sbjct: 66 GR 67
>IFM2_HUMAN (Q01629) Interferon-induced transmembrane protein 2| (Interferon-inducible protein 1-8D) Length = 132 Score = 28.5 bits (62), Expect = 8.6 Identities = 12/32 (37%), Positives = 20/32 (62%) Frame = +3 Query: 114 SAGNPFRSEKPKADQALSVIGMDHIPLPPTSS 209 ++G P E K +Q ++++G H P PPTS+ Sbjct: 12 NSGQPPNYEMLKEEQEVAMLGGPHNPAPPTST 43
>HR4_DROME (Q9W539) Hormone receptor 4 (dHR4)| Length = 1518 Score = 28.5 bits (62), Expect = 8.6 Identities = 16/48 (33%), Positives = 24/48 (50%) Frame = +1 Query: 115 QQETPSAQKNQKQTRHYQLLGWITYPFHQPLHGPLVQQGGYGSHHGMK 258 QQ+ + Q++Q+Q +H Q H PLH Q G+ SHH + Sbjct: 1032 QQQAAAQQQHQQQQQHQQHQQHQQQQLHSPLHHHHHQ--GHQSHHAQQ 1077
>RAVR1_MOUSE (Q9CW46) Protein raver-1| Length = 748 Score = 28.5 bits (62), Expect = 8.6 Identities = 17/44 (38%), Positives = 22/44 (50%) Frame = +1 Query: 127 PSAQKNQKQTRHYQLLGWITYPFHQPLHGPLVQQGGYGSHHGMK 258 PS+ K+TR + G P PL P V GG GS++G K Sbjct: 523 PSSNLAGKETRGWGGSGRGRRPAEPPLPSPAVPGGGSGSNNGNK 566
>RNH2_ANADE (Q2IMM4) Ribonuclease HII (EC 3.1.26.4) (RNase HII)| Length = 283 Score = 28.5 bits (62), Expect = 8.6 Identities = 14/42 (33%), Positives = 21/42 (50%) Frame = -2 Query: 166 DNAWSAFGFSERKGFPADLHCENHSNLNVCSVNMTIFFAPLR 41 D A +GF+ KG+P H + L C ++ FAP+R Sbjct: 219 DLAHPGYGFARHKGYPTAEHFDALGRLGACPIHRR-SFAPVR 259
>TFE2_HUMAN (P15923) Transcription factor E2-alpha (Immunoglobulin| enhancer-binding factor E12/E47) (Transcription factor 3) (TCF-3) (Immunoglobulin transcription factor 1) (Transcription factor ITF-1) (Kappa-E2-binding factor) Length = 654 Score = 28.5 bits (62), Expect = 8.6 Identities = 20/62 (32%), Positives = 24/62 (38%) Frame = +3 Query: 174 GMDHIPLPPTSSWASGSTRWLRFTPWHETDRTGGASVGTAVKGNYSLSMGSIFSGLPAFI 353 G +PLPP S S F H+ +R G G V G L S FS P Sbjct: 243 GSSPLPLPPGSGPVGSSGSSSTFGGLHQHERMGYQLHGAEVNG--GLPSASSFSSAPGAT 300 Query: 354 FG 359 +G Sbjct: 301 YG 302 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,605,337 Number of Sequences: 219361 Number of extensions: 1613933 Number of successful extensions: 4580 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 4440 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4575 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2909956200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
