ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl32a03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_196000.1| Oryza sativa (japonica cultivar-group) putative... 60 7e-06
2gb|AC093093.5| Oryza sativa chromosome 10 BAC OSJNBb0076H04 geno... 60 7e-06
3gb|AC099402.2| Oryza sativa chromosome 10 clone OSJNBa0022D10, c... 60 7e-06
4dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 60 7e-06
5dbj|AK064907.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 7e-06
6gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 60 7e-06
7gb|AC133450.6| Oryza sativa chromosome 3 BAC OSJNBa0072F13 genom... 50 0.006
8gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 50 0.006
9gb|AC107207.9| Oryza sativa chromosome 3 BAC OSJNBb0106M04 genom... 50 0.006
10dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
11gb|AC168275.4| Mus musculus 10 BAC RP23-350O21 (Roswell Park Can... 42 1.6
12gb|AC003075.2| Homo sapiens PAC clone RP4-658N5 from 7p21, compl... 42 1.6
13emb|BX537290.9| Zebrafish DNA sequence from clone DKEY-89K1 in l... 42 1.6
14emb|BX897685.6| Zebrafish DNA sequence from clone CH211-234H8, c... 42 1.6
15gb|AC158624.4| Mus musculus BAC RP23-299I16 (Roswell Park Cance... 42 1.6
16gb|AC156387.5| Mus musculus 10 BAC RP24-396H15 (Roswell Park Can... 42 1.6
17gb|AC153968.3| Mus musculus 10 BAC RP24-343C11 (Roswell Park Can... 42 1.6
18gb|AY112720.1| Pseudomonas aeruginosa type IV pilin structural s... 40 6.2
19gb|AC149215.3| Mus musculus BAC clone RP24-201G21 from chromosom... 40 6.2
20gb|BC045131.1| Xenopus laevis similar to UDP-N-acetyl-alpha-D-ga... 40 6.2
21emb|AL445473.7| Human DNA sequence from clone RP11-214M7 on chro... 40 6.2
22emb|AL593845.5| Zebrafish DNA sequence from clone BUSM1-142B24 i... 40 6.2
23emb|BX465838.15| Zebrafish DNA sequence from clone DKEY-11J8 in ... 40 6.2
24gb|AY237123.1| Phaseolus vulgaris truncated NBS-LRR resistance-l... 40 6.2
25gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 40 6.2
26dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome 40 6.2
27gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome 40 6.2
28emb|AL928587.7| Mouse DNA sequence from clone RP23-282M14 on chr... 40 6.2 
>ref|NM_196000.1| Oryza sativa (japonica cultivar-group) putative tRNA
            (Guanine-N2-)-Methyltransferase (OSJNBa0022D10.5), mRNA
          Length = 1473

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 352  tctttggaccccagtgtttttcaggattaggcagaaatcttgggctcttc 401
            |||| |||||||| | ||||||||||||||| | ||||||||||||||||
Sbjct: 1426 tcttaggaccccaatatttttcaggattaggtacaaatcttgggctcttc 1377
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>gb|AC093093.5| Oryza sativa chromosome 10 BAC OSJNBb0076H04 genomic sequence, complete
              sequence
          Length = 141050

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                                
Query: 352    tctttggaccccagtgtttttcaggattaggcagaaatcttgggctcttc 401
              |||| |||||||| | ||||||||||||||| | ||||||||||||||||
Sbjct: 135418 tcttaggaccccaatatttttcaggattaggtacaaatcttgggctcttc 135467
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>gb|AC099402.2| Oryza sativa chromosome 10 clone OSJNBa0022D10, complete sequence
          Length = 144459

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                               
Query: 352   tctttggaccccagtgtttttcaggattaggcagaaatcttgggctcttc 401
             |||| |||||||| | ||||||||||||||| | ||||||||||||||||
Sbjct: 63999 tcttaggaccccaatatttttcaggattaggtacaaatcttgggctcttc 63950
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                                  
Query: 352      tctttggaccccagtgtttttcaggattaggcagaaatcttgggctcttc 401
                |||| |||||||| | ||||||||||||||| | ||||||||||||||||
Sbjct: 10423543 tcttaggaccccaatatttttcaggattaggtacaaatcttgggctcttc 10423494
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>dbj|AK064907.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000L24, full
            insert sequence
          Length = 1839

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 352  tctttggaccccagtgtttttcaggattaggcagaaatcttgggctcttc 401
            |||| |||||||| | ||||||||||||||| | ||||||||||||||||
Sbjct: 1683 tcttaggaccccaatatttttcaggattaggtacaaatcttgggctcttc 1634
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                                  
Query: 352      tctttggaccccagtgtttttcaggattaggcagaaatcttgggctcttc 401
                |||| |||||||| | ||||||||||||||| | ||||||||||||||||
Sbjct: 10429582 tcttaggaccccaatatttttcaggattaggtacaaatcttgggctcttc 10429533
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>gb|AC133450.6| Oryza sativa chromosome 3 BAC OSJNBa0072F13 genomic sequence, complete
              sequence
          Length = 150743

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 61/72 (84%), Gaps = 2/72 (2%)
 Strand = Plus / Plus

                                                                          
Query: 165    tcagttattgggatggatcacataccccttccaccaacctcttcatgggcctctggttca 224
              |||||||||| || ||||||  | ||||||  ||||||||||||||| |||| |||||||
Sbjct: 143617 tcagttattgtgagggatca--tgcccctttgaccaacctcttcatgtgcctttggttca 143674

                          
Query: 225    acaaggtggtta 236
              || | |||||||
Sbjct: 143675 acgaagtggtta 143686
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 61/72 (84%), Gaps = 2/72 (2%)
 Strand = Plus / Minus

                                                                            
Query: 165      tcagttattgggatggatcacataccccttccaccaacctcttcatgggcctctggttca 224
                |||||||||| || ||||||  | ||||||  ||||||||||||||| |||| |||||||
Sbjct: 31537050 tcagttattgtgagggatca--tgcccctttgaccaacctcttcatgtgcctttggttca 31536993

                            
Query: 225      acaaggtggtta 236
                || | |||||||
Sbjct: 31536992 acgaagtggtta 31536981
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>gb|AC107207.9| Oryza sativa chromosome 3 BAC OSJNBb0106M04 genomic sequence, complete
             sequence
          Length = 133449

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 61/72 (84%), Gaps = 2/72 (2%)
 Strand = Plus / Plus

                                                                         
Query: 165   tcagttattgggatggatcacataccccttccaccaacctcttcatgggcctctggttca 224
             |||||||||| || ||||||  | ||||||  ||||||||||||||| |||| |||||||
Sbjct: 55556 tcagttattgtgagggatca--tgcccctttgaccaacctcttcatgtgcctttggttca 55613

                         
Query: 225   acaaggtggtta 236
             || | |||||||
Sbjct: 55614 acgaagtggtta 55625
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 61/72 (84%), Gaps = 2/72 (2%)
 Strand = Plus / Minus

                                                                            
Query: 165      tcagttattgggatggatcacataccccttccaccaacctcttcatgggcctctggttca 224
                |||||||||| || ||||||  | ||||||  ||||||||||||||| |||| |||||||
Sbjct: 31627556 tcagttattgtgagggatca--tgcccctttgaccaacctcttcatgtgcctttggttca 31627499

                            
Query: 225      acaaggtggtta 236
                || | |||||||
Sbjct: 31627498 acgaagtggtta 31627487
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>gb|AC168275.4| Mus musculus 10 BAC RP23-350O21 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 188458

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 350   catctttggaccccagtgttt 370
             |||||||||||||||||||||
Sbjct: 86805 catctttggaccccagtgttt 86785
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>gb|AC003075.2| Homo sapiens PAC clone RP4-658N5 from 7p21, complete sequence
          Length = 123336

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 59    aattgtcatatttacagagca 79
             |||||||||||||||||||||
Sbjct: 85230 aattgtcatatttacagagca 85250
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>emb|BX537290.9| Zebrafish DNA sequence from clone DKEY-89K1 in linkage group 5,
            complete sequence
          Length = 180630

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 87   aaattgctatggttttcacaa 107
            |||||||||||||||||||||
Sbjct: 2055 aaattgctatggttttcacaa 2075
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>emb|BX897685.6| Zebrafish DNA sequence from clone CH211-234H8, complete sequence
          Length = 179286

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 87     aaattgctatggttttcacaa 107
              |||||||||||||||||||||
Sbjct: 120665 aaattgctatggttttcacaa 120685
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>gb|AC158624.4| Mus musculus  BAC RP23-299I16 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 174188

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 270   gggggagcaagtgtgggcacggctg 294
             ||||||||||||||||||| |||||
Sbjct: 83225 gggggagcaagtgtgggcagggctg 83201
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>gb|AC156387.5| Mus musculus 10 BAC RP24-396H15 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 230270

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 350   catctttggaccccagtgttt 370
             |||||||||||||||||||||
Sbjct: 48646 catctttggaccccagtgttt 48626
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>gb|AC153968.3| Mus musculus 10 BAC RP24-343C11 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 151710

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 270   gggggagcaagtgtgggcacggctg 294
             ||||||||||||||||||| |||||
Sbjct: 18927 gggggagcaagtgtgggcagggctg 18903
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>gb|AY112720.1| Pseudomonas aeruginosa type IV pilin structural subunit (pilA),
            putative transmembrane protein, and type IV pilin
            accessory protein (tfpX) genes, complete cds
          Length = 3701

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 191  ccttccaccaacctcttcat 210
            ||||||||||||||||||||
Sbjct: 2434 ccttccaccaacctcttcat 2415
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>gb|AC149215.3| Mus musculus BAC clone RP24-201G21 from chromosome 7, complete sequence
          Length = 174164

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 108   tgtaaatcagcaggaaaccc 127
             ||||||||||||||||||||
Sbjct: 29264 tgtaaatcagcaggaaaccc 29283
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>gb|BC045131.1| Xenopus laevis similar to
           UDP-N-acetyl-alpha-D-galactosamine:(N-acetylneuraminyl)-
           galactosylglucosylceramide
           N-acetylgalactosaminyltransferase (GalNAc-T), mRNA (cDNA
           clone MGC:53523 IMAGE:5572671), complete cds
          Length = 2091

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 356 tggaccccagtgtttttcag 375
           ||||||||||||||||||||
Sbjct: 166 tggaccccagtgtttttcag 185
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>emb|AL445473.7| Human DNA sequence from clone RP11-214M7 on chromosome 1 Contains part
             of the RYR2 gene for ryanodine receptor 2 (cardiac),
             complete sequence
          Length = 183549

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 378   ttaggcagaaatcttgggct 397
             ||||||||||||||||||||
Sbjct: 42798 ttaggcagaaatcttgggct 42779
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>emb|AL593845.5| Zebrafish DNA sequence from clone BUSM1-142B24 in linkage group 17
             Contains a novel gene for a protein similar to human
             FLJ11186, a novel gene similar to human KIAA1316 and fly
             CG2747, a novel gene for a protein with a HECT-domain
             (ubiquitin-transferase) and a CpG island, complete
             sequence
          Length = 89159

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    gagcaaagaaaattgtcata 68
             ||||||||||||||||||||
Sbjct: 80684 gagcaaagaaaattgtcata 80665
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>emb|BX465838.15| Zebrafish DNA sequence from clone DKEY-11J8 in linkage group 17, complete
              sequence
          Length = 229940

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 49     gagcaaagaaaattgtcata 68
              ||||||||||||||||||||
Sbjct: 175915 gagcaaagaaaattgtcata 175934
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>gb|AY237123.1| Phaseolus vulgaris truncated NBS-LRR resistance-like protein (JA1tr)
            gene isoforms, complete cds; alternatively spliced
          Length = 3440

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 194  tccaccaacctcttcatggg 213
            ||||||||||||||||||||
Sbjct: 3345 tccaccaacctcttcatggg 3364
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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 193     ttccaccaacctcttcatgg 212
               ||||||||||||||||||||
Sbjct: 5187619 ttccaccaacctcttcatgg 5187600
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>dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome
          Length = 4202352

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 50     agcaaagaaaattgtcatatttac 73
              |||||||||||||||||| |||||
Sbjct: 982120 agcaaagaaaattgtcatttttac 982143
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>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 193     ttccaccaacctcttcatgg 212
               ||||||||||||||||||||
Sbjct: 1177407 ttccaccaacctcttcatgg 1177388
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>emb|AL928587.7| Mouse DNA sequence from clone RP23-282M14 on chromosome 2, complete
              sequence
          Length = 218618

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 134    ctcagaaaaaccaaaagcagacca 157
              ||||||||||| ||||||||||||
Sbjct: 195011 ctcagaaaaacaaaaagcagacca 195034


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,248,769
Number of Sequences: 3902068
Number of extensions: 5248769
Number of successful extensions: 87669
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87378
Number of HSP's gapped (non-prelim): 291
length of query: 458
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 436
effective length of database: 17,147,199,772
effective search space: 7476179100592
effective search space used: 7476179100592
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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