ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl32a01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_469360.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3534 Score = 91.7 bits (46), Expect = 2e-15 Identities = 112/134 (83%) Strand = Plus / Minus Query: 310 gtgagcttcctcatgtcctcctcttggacactggggggagccttctctctgtaaccggac 369 ||||| || |||||||||||||| |||||| | | |||||||||||| ||||||| || Sbjct: 3092 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 3033 Query: 370 gcttccatcttctgagacagggcatgctgtaacttttggatttcatccctctttttcctt 429 |||||||| ||||| ||||| || || || | |||||| ||||| || ||||||||||| Sbjct: 3032 gcttccattttctgtgacagtgcgtgttggagcttttgaatttcttctctctttttcctc 2973 Query: 430 agcttttcgagctc 443 |||||||| ||||| Sbjct: 2972 agcttttcaagctc 2959
>dbj|AK121157.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079F18, full insert sequence Length = 3587 Score = 91.7 bits (46), Expect = 2e-15 Identities = 112/134 (83%) Strand = Plus / Minus Query: 310 gtgagcttcctcatgtcctcctcttggacactggggggagccttctctctgtaaccggac 369 ||||| || |||||||||||||| |||||| | | |||||||||||| ||||||| || Sbjct: 3304 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 3245 Query: 370 gcttccatcttctgagacagggcatgctgtaacttttggatttcatccctctttttcctt 429 |||||||| ||||| ||||| || || || | |||||| ||||| || ||||||||||| Sbjct: 3244 gcttccattttctgtgacagtgcgtgttggagcttttgaatttcttctctctttttcctc 3185 Query: 430 agcttttcgagctc 443 |||||||| ||||| Sbjct: 3184 agcttttcaagctc 3171
>dbj|AK066973.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089D01, full insert sequence Length = 4411 Score = 91.7 bits (46), Expect = 2e-15 Identities = 85/98 (86%) Strand = Plus / Minus Query: 346 ggagccttctctctgtaaccggacgcttccatcttctgagacagggcatgctgtaacttt 405 |||||||||||| | |||||||| |||||||| ||||| || |||||||| || | |||| Sbjct: 4113 ggagccttctctttataaccggaagcttccattttctgtgatagggcatgttgcagcttt 4054 Query: 406 tggatttcatccctctttttccttagcttttcgagctc 443 || ||||| || |||||||||||||||||||| ||||| Sbjct: 4053 tgaatttcttctctctttttccttagcttttcaagctc 4016
>gb|AY109108.1| Zea mays PCO116815 mRNA sequence Length = 1041 Score = 77.8 bits (39), Expect = 3e-11 Identities = 144/179 (80%) Strand = Plus / Minus Query: 259 tctagtttcttctcagcctcaccgatgacccgcagttgctcgaaaaaggcggtgagcttc 318 |||| |||||||||||| |||| ||||||| |||||||| || || |||||||||||| Sbjct: 801 tctaatttcttctcagcttcactgatgacctctagttgctccaacaaagcggtgagcttc 742 Query: 319 ctcatgtcctcctcttggacactggggggagccttctctctgtaaccggacgcttccatc 378 |||||||||||||| || || || | ||||||||||| | || || || || ||||| Sbjct: 741 ctcatgtcctcctcctgtacgctctgtggagccttctcgcgatagccagaggcgtccatt 682 Query: 379 ttctgagacagggcatgctgtaacttttggatttcatccctctttttccttagcttttc 437 ||||| | ||| |||| ||||| |||||| || ||||| | || ||| |||||||||| Sbjct: 681 ttctgcgccagtgcattctgtagcttttgaatctcatcttttttcttctttagcttttc 623
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 63.9 bits (32), Expect = 4e-07 Identities = 68/80 (85%) Strand = Plus / Minus Query: 310 gtgagcttcctcatgtcctcctcttggacactggggggagccttctctctgtaaccggac 369 ||||| || |||||||||||||| |||||| | | |||||||||||| ||||||| || Sbjct: 27542742 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 27542683 Query: 370 gcttccatcttctgagacag 389 |||||||| ||||| ||||| Sbjct: 27542682 gcttccattttctgtgacag 27542663 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 401 acttttggatttcatccctctttttccttagcttttcgagctc 443 ||||||| ||||| || |||||||||||||||||||| ||||| Sbjct: 651915 acttttgaatttcttctctctttttccttagcttttcaagctc 651873 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 346 ggagccttctctctgtaaccggacgcttccatcttctgagacagggcatg 395 |||||||||||| | |||||||| |||||||| ||||| || |||||||| Sbjct: 652074 ggagccttctctttataaccggaagcttccattttctgtgatagggcatg 652025 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Plus Query: 401 acttttggatttcatccctctttttccttagcttttc 437 ||||||||||| |||| ||||| |||||||||||||| Sbjct: 12395975 acttttggattccatctctcttcttccttagcttttc 12396011 Score = 46.1 bits (23), Expect = 0.098 Identities = 38/43 (88%) Strand = Plus / Minus Query: 401 acttttggatttcatccctctttttccttagcttttcgagctc 443 ||||||| ||||| || ||||||||||| |||||||| ||||| Sbjct: 27542546 acttttgaatttcttctctctttttcctcagcttttcaagctc 27542504 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 256 gcatctagtttcttctcagcctcac 280 |||||||||||||||||||| |||| Sbjct: 12395727 gcatctagtttcttctcagcttcac 12395751
>gb|AC137998.2| Oryza sativa chromosome 3 BAC OSJNBa0010B01 genomic sequence, complete sequence Length = 27470 Score = 63.9 bits (32), Expect = 4e-07 Identities = 68/80 (85%) Strand = Plus / Plus Query: 310 gtgagcttcctcatgtcctcctcttggacactggggggagccttctctctgtaaccggac 369 ||||| || |||||||||||||| |||||| | | |||||||||||| ||||||| || Sbjct: 20032 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 20091 Query: 370 gcttccatcttctgagacag 389 |||||||| ||||| ||||| Sbjct: 20092 gcttccattttctgtgacag 20111 Score = 46.1 bits (23), Expect = 0.098 Identities = 38/43 (88%) Strand = Plus / Plus Query: 401 acttttggatttcatccctctttttccttagcttttcgagctc 443 ||||||| ||||| || ||||||||||| |||||||| ||||| Sbjct: 20228 acttttgaatttcttctctctttttcctcagcttttcaagctc 20270
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 63.9 bits (32), Expect = 4e-07 Identities = 68/80 (85%) Strand = Plus / Minus Query: 310 gtgagcttcctcatgtcctcctcttggacactggggggagccttctctctgtaaccggac 369 ||||| || |||||||||||||| |||||| | | |||||||||||| ||||||| || Sbjct: 27634065 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 27634006 Query: 370 gcttccatcttctgagacag 389 |||||||| ||||| ||||| Sbjct: 27634005 gcttccattttctgtgacag 27633986 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 401 acttttggatttcatccctctttttccttagcttttcgagctc 443 ||||||| ||||| || |||||||||||||||||||| ||||| Sbjct: 651913 acttttgaatttcttctctctttttccttagcttttcaagctc 651871 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 346 ggagccttctctctgtaaccggacgcttccatcttctgagacagggcatg 395 |||||||||||| | |||||||| |||||||| ||||| || |||||||| Sbjct: 652072 ggagccttctctttataaccggaagcttccattttctgtgatagggcatg 652023 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Plus Query: 401 acttttggatttcatccctctttttccttagcttttc 437 ||||||||||| |||| ||||| |||||||||||||| Sbjct: 12392738 acttttggattccatctctcttcttccttagcttttc 12392774 Score = 46.1 bits (23), Expect = 0.098 Identities = 38/43 (88%) Strand = Plus / Minus Query: 401 acttttggatttcatccctctttttccttagcttttcgagctc 443 ||||||| ||||| || ||||||||||| |||||||| ||||| Sbjct: 27633869 acttttgaatttcttctctctttttcctcagcttttcaagctc 27633827 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 256 gcatctagtttcttctcagcctcac 280 |||||||||||||||||||| |||| Sbjct: 12392490 gcatctagtttcttctcagcttcac 12392514
>gb|AC120508.3| Oryza sativa chromosome 3 BAC OSJNBb0021O11 genomic sequence, complete sequence Length = 123406 Score = 63.9 bits (32), Expect = 4e-07 Identities = 68/80 (85%) Strand = Plus / Plus Query: 310 gtgagcttcctcatgtcctcctcttggacactggggggagccttctctctgtaaccggac 369 ||||| || |||||||||||||| |||||| | | |||||||||||| ||||||| || Sbjct: 7772 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 7831 Query: 370 gcttccatcttctgagacag 389 |||||||| ||||| ||||| Sbjct: 7832 gcttccattttctgtgacag 7851 Score = 46.1 bits (23), Expect = 0.098 Identities = 38/43 (88%) Strand = Plus / Plus Query: 401 acttttggatttcatccctctttttccttagcttttcgagctc 443 ||||||| ||||| || ||||||||||| |||||||| ||||| Sbjct: 7968 acttttgaatttcttctctctttttcctcagcttttcaagctc 8010
>gb|BT017806.1| Zea mays clone EL01N0506F04.c mRNA sequence Length = 1244 Score = 61.9 bits (31), Expect = 2e-06 Identities = 142/179 (79%) Strand = Plus / Minus Query: 259 tctagtttcttctcagcctcaccgatgacccgcagttgctcgaaaaaggcggtgagcttc 318 |||| |||||||||||| |||| ||||||| ||||| || || || |||| |||||| Sbjct: 953 tctaatttcttctcagcttcactgatgacctctagttgttccaacaaagcggggagcttt 894 Query: 319 ctcatgtcctcctcttggacactggggggagccttctctctgtaaccggacgcttccatc 378 |||||||||||||| || || || | ||||||||||| | || || || || ||||| Sbjct: 893 ctcatgtcctcctcctgcacgctctgtggagccttctcgcgatacccagaggcgtccatt 834 Query: 379 ttctgagacagggcatgctgtaacttttggatttcatccctctttttccttagcttttc 437 ||||| | ||| |||| |||| |||||| |||||||| | || |||||||||||||| Sbjct: 833 ttctgtgccagtgcattttgtagcttttgaatttcatcttttttcttccttagcttttc 775
>gb|AY112223.1| Zea mays CL3071_1 mRNA sequence Length = 1082 Score = 60.0 bits (30), Expect = 7e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 259 tctagtttcttctcagcctcaccgatgacccgcagttgctcgaaaaaggcggtgagcttc 318 |||| |||||||||||| |||| ||||||| ||||| || || || ||||||||||| Sbjct: 446 tctaatttcttctcagcttcactgatgacctctagttgttccaacaaagcggtgagcttt 505 Query: 319 ctcatgtcctcctc 332 |||||||||||||| Sbjct: 506 ctcatgtcctcctc 519
>gb|AC121490.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0005F16, complete sequence Length = 160053 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 401 acttttggatttcatccctctttttccttagcttttcgagctc 443 ||||||| ||||| || |||||||||||||||||||| ||||| Sbjct: 37796 acttttgaatttcttctctctttttccttagcttttcaagctc 37754 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 346 ggagccttctctctgtaaccggacgcttccatcttctgagacagggcatg 395 |||||||||||| | |||||||| |||||||| ||||| || |||||||| Sbjct: 37955 ggagccttctctttataaccggaagcttccattttctgtgatagggcatg 37906
>dbj|AK100513.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099P08, full insert sequence Length = 3639 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 391 gcatgctgtaacttttggatttcatccctctttttccttagcttttc 437 ||||| |||| |||||||||| |||| ||||| |||||||||||||| Sbjct: 3384 gcatggtgtagcttttggattccatctctcttcttccttagcttttc 3338 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 256 gcatctagtttcttctcagcctcac 280 |||||||||||||||||||| |||| Sbjct: 3519 gcatctagtttcttctcagcttcac 3495
>gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0098H14, complete sequence Length = 132560 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Plus Query: 401 acttttggatttcatccctctttttccttagcttttc 437 ||||||||||| |||| ||||| |||||||||||||| Sbjct: 54993 acttttggattccatctctcttcttccttagcttttc 55029 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 256 gcatctagtttcttctcagcctcac 280 |||||||||||||||||||| |||| Sbjct: 54745 gcatctagtttcttctcagcttcac 54769
>dbj|AB027572.1| Triticum aestivum chloroplast DNA, 21.1-kb fragment bearing RNA polymerase subunit (rpo) genes Length = 21245 Score = 48.1 bits (24), Expect = 0.025 Identities = 27/28 (96%) Strand = Plus / Minus Query: 27 atttcagagaagttgcttttgaagtgga 54 |||||||||||||| ||||||||||||| Sbjct: 10920 atttcagagaagtttcttttgaagtgga 10893
>dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 Score = 48.1 bits (24), Expect = 0.025 Identities = 27/28 (96%) Strand = Plus / Minus Query: 27 atttcagagaagttgcttttgaagtgga 54 |||||||||||||| ||||||||||||| Sbjct: 22274 atttcagagaagtttcttttgaagtgga 22247
>gb|AC146506.1| Solanum demissum chromosome 5 BAC PGEC989P08 genomic sequence, complete sequence Length = 121915 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 126 catttgaattttctataaatgt 147 |||||||||||||||||||||| Sbjct: 75708 catttgaattttctataaatgt 75687
>gb|AY730338.1| Solanum tuberosum strain P6/210 clone BAC BA47f2, complete sequence Length = 81567 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 127 atttgaattttctataaatgt 147 ||||||||||||||||||||| Sbjct: 74176 atttgaattttctataaatgt 74196
>gb|AC124558.4| Mus musculus BAC clone RP23-248O8 from chromosome 10, complete sequence Length = 199938 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 12 ggccaagtataagtcatttcagaga 36 ||||||||| ||||||||||||||| Sbjct: 7822 ggccaagtagaagtcatttcagaga 7846
>ref|XM_537383.2| PREDICTED: Canis familiaris similar to RING finger protein 31 (Zinc in-between-RING-finger ubiquitin-associated domain protein) (LOC480259), mRNA Length = 3490 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 275 cctcaccgatgacccgcagttgctc 299 ||||||||||||| ||||||||||| Sbjct: 2442 cctcaccgatgacacgcagttgctc 2466
>emb|AL645564.6| Mouse DNA sequence from clone RP23-35N22 on chromosome 11 Contains part of a novel gene and two CpG islands, complete sequence Length = 205101 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 25 tcatttcagagaagttgcttt 45 ||||||||||||||||||||| Sbjct: 111642 tcatttcagagaagttgcttt 111662
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 62 cactcacagatcaacatcatt 82 ||||||||||||||||||||| Sbjct: 18717892 cactcacagatcaacatcatt 18717872 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 181 tatcaacttccaaacaaaaat 201 ||||||||||||||||||||| Sbjct: 9829802 tatcaacttccaaacaaaaat 9829822 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 gtgacaccaccaccatccgc 165 |||||||||||||||||||| Sbjct: 20872769 gtgacaccaccaccatccgc 20872788
>gb|AC158687.2| Mus musculus 10 BAC RP24-423N13 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 154559 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 12 ggccaagtataagtcatttcagaga 36 ||||||||| ||||||||||||||| Sbjct: 132926 ggccaagtagaagtcatttcagaga 132950
>dbj|AP005822.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0456E06 Length = 164353 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 181 tatcaacttccaaacaaaaat 201 ||||||||||||||||||||| Sbjct: 120044 tatcaacttccaaacaaaaat 120064
>dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0063H02 Length = 152326 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 181 tatcaacttccaaacaaaaat 201 ||||||||||||||||||||| Sbjct: 26437 tatcaacttccaaacaaaaat 26457
>dbj|AP005492.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0077L03 Length = 171177 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 62 cactcacagatcaacatcatt 82 ||||||||||||||||||||| Sbjct: 43643 cactcacagatcaacatcatt 43623
>gb|AC113122.9| Mus musculus chromosome 8, clone RP23-349P4, complete sequence Length = 203728 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 ccatttgaattttctataaa 144 |||||||||||||||||||| Sbjct: 23208 ccatttgaattttctataaa 23189
>ref|XM_543770.2| PREDICTED: Canis familiaris similar to solute carrier family 7 (cationic amino acid transporter, y+ system), member 3 (LOC486643), mRNA Length = 3279 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 atgctgtaacttttggattt 412 |||||||||||||||||||| Sbjct: 1571 atgctgtaacttttggattt 1590
>gb|AC125339.4| Mus musculus BAC clone RP24-356P17 from chromosome 17, complete sequence Length = 156282 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 aacttccaaacaaaaatgcc 204 |||||||||||||||||||| Sbjct: 16747 aacttccaaacaaaaatgcc 16766
>emb|Z95310.1|CEH40L08 Caenorhabditis elegans Fosmid H40L08, complete sequence Length = 15122 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 aacttccaaacaaaaatgcc 204 |||||||||||||||||||| Sbjct: 3649 aacttccaaacaaaaatgcc 3668
>emb|AL683828.8| Mouse DNA sequence from clone RP23-340H1 on chromosome 4 Contains the 3' end of the Col27a1 gene for procollagen type XXVII alpha 1, the Orm1, Orm2 and Orm3 genes for orosomucoid 1, 2 and 3, an orosomucoid pseudogene, the gene for a novel protein similar to human AT-hook protein AKNA, gene 4933437N03Rik, the Whrn gene for whirlin and two CpG islands, complete sequence Length = 214370 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 312 gagcttcctcatgtcctcct 331 |||||||||||||||||||| Sbjct: 31754 gagcttcctcatgtcctcct 31735
>emb|BX324134.11| Zebrafish DNA sequence from clone DKEY-103K8 in linkage group 6, complete sequence Length = 219514 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 ataagtcatttcagagaagt 39 |||||||||||||||||||| Sbjct: 171568 ataagtcatttcagagaagt 171549
>emb|AL845501.9| Mouse DNA sequence from clone RP23-194C12 on chromosome 4 Contains a ribosomal protein S18 (Rps18) pseudogene, complete sequence Length = 156572 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 ttccatcttctgagacaggg 391 |||||||||||||||||||| Sbjct: 31116 ttccatcttctgagacaggg 31135
>gb|AC093298.3| Homo sapiens chromosome 5 clone RP11-543L14, complete sequence Length = 198687 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 417 cctctttttccttagctttt 436 |||||||||||||||||||| Sbjct: 147791 cctctttttccttagctttt 147772
>gb|AC105426.4| Homo sapiens BAC clone RP11-794N18 from 4, complete sequence Length = 55775 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 gcttcctcatgtcctcctct 333 |||||||||||||||||||| Sbjct: 23507 gcttcctcatgtcctcctct 23526
>ref|NM_079456.2| Drosophila melanogaster Soluble NSF attachment protein CG6625-RA (Snap), mRNA Length = 2069 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 gaattttctataaatgtgac 150 |||||||||||||||||||| Sbjct: 1762 gaattttctataaatgtgac 1743
>gb|AC009839.10| Drosophila melanogaster 3L BAC RP98-16G9 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 185918 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 gaattttctataaatgtgac 150 |||||||||||||||||||| Sbjct: 106242 gaattttctataaatgtgac 106223
>gb|AC138310.3| Mus musculus BAC clone RP23-205H21 from chromosome 17, complete sequence Length = 195483 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 aacttccaaacaaaaatgcc 204 |||||||||||||||||||| Sbjct: 160602 aacttccaaacaaaaatgcc 160621
>gb|AC083783.8| Homo sapiens chromosome 17, clone RP11-462C21, complete sequence Length = 143516 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 tgaattttctataaatgtga 149 |||||||||||||||||||| Sbjct: 121095 tgaattttctataaatgtga 121076
>gb|AC092960.3| Homo sapiens 3 BAC RP11-393B14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 172507 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 catttgaattttctataaat 145 |||||||||||||||||||| Sbjct: 161099 catttgaattttctataaat 161080
>ref|XM_228548.3| PREDICTED: Rattus norvegicus similar to hypothetical protein 6430402L03 (LOC302412), mRNA Length = 1632 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 cttcctcatgtcctcctctt 334 |||||||||||||||||||| Sbjct: 1005 cttcctcatgtcctcctctt 986
>gb|AY069477.1| Drosophila melanogaster LD21601 full insert cDNA Length = 2054 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 gaattttctataaatgtgac 150 |||||||||||||||||||| Sbjct: 1730 gaattttctataaatgtgac 1711
>dbj|AP003613.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0458E11 Length = 148798 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 gtgacaccaccaccatccgc 165 |||||||||||||||||||| Sbjct: 127444 gtgacaccaccaccatccgc 127463
>gb|AC134339.6| Mus musculus BAC clone RP23-5F21 from 8, complete sequence Length = 229073 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ctgtaacttttggatttcat 415 |||||||||||||||||||| Sbjct: 161157 ctgtaacttttggatttcat 161138
>gb|AE003514.4| Drosophila melanogaster chromosome 3L, section 71 of 83 of the complete sequence Length = 299903 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 gaattttctataaatgtgac 150 |||||||||||||||||||| Sbjct: 288396 gaattttctataaatgtgac 288377
>gb|AC005291.1|AC005291 Homo sapiens chromosome 17, clone hRPK.401_O_9, complete sequence Length = 198582 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 tgaattttctataaatgtga 149 |||||||||||||||||||| Sbjct: 63377 tgaattttctataaatgtga 63358
>gb|AC173477.2| Mus musculus BAC clone RP24-344P5 from chromosome 17, complete sequence Length = 155999 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 13 gccaagtataagtcatttcagaga 36 |||||||||||| ||||||||||| Sbjct: 122000 gccaagtataagccatttcagaga 122023
>gb|U09374.1|DMU09374 Drosophila melanogaster soluble NSF attachment protein mRNA, complete cds Length = 2038 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 gaattttctataaatgtgac 150 |||||||||||||||||||| Sbjct: 1718 gaattttctataaatgtgac 1699
>gb|AC153930.2| Mus musculus 10 BAC RP24-461H14 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 186915 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 128 tttgaattttctataaatgtgaca 151 |||||| ||||||||||||||||| Sbjct: 132214 tttgaaatttctataaatgtgaca 132191
>emb|AL691423.14| Mouse DNA sequence from clone RP23-21D3 on chromosome 2, complete sequence Length = 216415 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 tttgaattttctataaatgt 147 |||||||||||||||||||| Sbjct: 104442 tttgaattttctataaatgt 104461
>emb|AL589870.30| Mouse DNA sequence from clone RP23-118A2 on chromosome 2, complete sequence Length = 202686 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 gtggacactcaacactcaca 69 |||||||||||||||||||| Sbjct: 191713 gtggacactcaacactcaca 191732
>gb|AC024092.19| Homo sapiens 12p BAC RP11-712A21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 171887 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 402 cttttggatttcatccctct 421 |||||||||||||||||||| Sbjct: 59407 cttttggatttcatccctct 59388 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,281,972 Number of Sequences: 3902068 Number of extensions: 5281972 Number of successful extensions: 136626 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 57 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 136249 Number of HSP's gapped (non-prelim): 376 length of query: 451 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 429 effective length of database: 17,147,199,772 effective search space: 7356148702188 effective search space used: 7356148702188 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
