Clone Name | rbastl31h05 |
---|---|
Clone Library Name | barley_pub |
>APRR9_ARATH (Q8L500) Two-component response regulator-like APRR9| (Pseudo-response regulator 9) Length = 468 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = -1 Query: 374 PTRKKNSANLYRHMWASMSRRSPPAKMATSAP 279 P RK NL++H+W ++ R P A S P Sbjct: 142 PMRKNELKNLWQHVWRRLTLRDDPTAHAQSLP 173
>GRIK1_MOUSE (Q60934) Glutamate receptor, ionotropic kainate 1 precursor| (Glutamate receptor 5) (GluR-5) (GluR5) Length = 836 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/31 (45%), Positives = 16/31 (51%) Frame = -1 Query: 392 RSMSTCPTRKKNSANLYRHMWASMSRRSPPA 300 R ST KK+ + Y MWA MS R P A Sbjct: 686 RDGSTMTFFKKSKISTYEKMWAFMSSRQPSA 716
>RPC2_MOUSE (P59470) DNA-directed RNA polymerase III subunit 127.6 kDa| polypeptide (EC 2.7.7.6) (RNA polymerase III subunit 2) (RPC2) Length = 1133 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = -2 Query: 370 LERKTQQTCTGICGQVCQGVARRPKWRH 287 L+R T QT + G + R+P WRH Sbjct: 779 LKRYTNQTFDKVMGPMLDAATRKPIWRH 806
>RPC2_HUMAN (Q9NW08) DNA-directed RNA polymerase III subunit 127.6 kDa| polypeptide (EC 2.7.7.6) (RNA polymerase III subunit 2) (RPC2) Length = 1133 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = -2 Query: 370 LERKTQQTCTGICGQVCQGVARRPKWRH 287 L+R T QT + G + R+P WRH Sbjct: 779 LKRYTNQTFDKVMGPMLDAATRKPIWRH 806
>LHX61_MOUSE (Q9R1R0) LIM/homeobox protein Lhx6.1| Length = 363 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +2 Query: 257 CRTRHKKQAQMSPFWPAGYALTYLPT 334 CR RHKK P P+G T LP+ Sbjct: 270 CRARHKKHTPQHPVPPSGAPPTRLPS 295
>YPL2_CAEEL (O44440) Protein yippee-like B0546.4| Length = 161 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 4/46 (8%) Frame = -1 Query: 371 TRKKNSANLYRHMWASMSRRSPPAKMATS----APVFCASCDRKIG 246 T A L++ W + R KM T VFC +C++K+G Sbjct: 37 TGSTGPATLFKRAWNVVYGRCEHRKMTTGWHTVRDVFCVTCNQKLG 82
>GATE_HALSA (Q9HQ32) Glutamyl-tRNA(Gln) amidotransferase subunit E (EC 6.3.5.-)| (Glu-ADT subunit E) Length = 622 Score = 27.3 bits (59), Expect = 9.0 Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 11/73 (15%) Frame = +1 Query: 37 NTPCVHEEDDRPTHVFCITYIYLPLQ-----------KVHVSNGVVVQKKKTMMIQHSAT 183 +T C+ EEDD P H + L+ + HV VV+ T Q S Sbjct: 79 DTTCLVEEDDEPPHRLDEDALAAALEIGHLLGMDAVDRAHVMRKVVIDGSNTGGFQRSTM 138 Query: 184 FAQGA*NRTKRNP 222 A+G T P Sbjct: 139 VAEGGAIDTSEGP 151
>FUSB_BURCE (P24127) Fusaric acid resistance protein fusB| Length = 142 Score = 27.3 bits (59), Expect = 9.0 Identities = 18/49 (36%), Positives = 24/49 (48%) Frame = -1 Query: 395 RRSMSTCPTRKKNSANLYRHMWASMSRRSPPAKMATSAPVFCASCDRKI 249 RRS S+ +R S + +R S R +PPA AT+ ASC I Sbjct: 93 RRSRSSGCSRSSRSCSCWRSPCGS--RCAPPAPRATATSAVTASCSPAI 139 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,705,585 Number of Sequences: 219361 Number of extensions: 953375 Number of successful extensions: 2610 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 2578 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2608 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 1370455656 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)