ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl31h02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY189120.1| Mus musculus nebulin (Neb) gene, complete sequence 46 0.041
2dbj|AK015137.1| Mus musculus adult male testis cDNA, RIKEN full-... 46 0.041
3emb|AL844571.8| Mouse DNA sequence from clone RP23-224C23 on chr... 46 0.041
4emb|AL845262.3| Mouse DNA sequence from clone RP23-14N22 on chro... 46 0.041
5emb|AL808102.8| Mouse DNA sequence from clone RP23-192O6 on chro... 46 0.041
6gb|AC116507.9| Mus musculus chromosome 19, clone RP24-309C17, co... 40 2.5
7ref|XM_723983.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 2.5
8ref|XM_664249.1| Plasmodium berghei strain ANKA hypothetical pro... 40 2.5
9tpg|BK003530.1| TPA: TPA_inf: Drosophila melanogaster HDC03016 (... 40 2.5
10gb|AC090079.6| Homo sapiens chromosome 17, clone CTD-2535P7, com... 40 2.5
11gb|AC105314.5| Homo sapiens BAC clone RP11-312H15 from 4, comple... 40 2.5
12gb|AC010599.8| Homo sapiens chromosome 5 clone CTC-561L20, compl... 40 2.5
13gb|AC090614.5| Homo sapiens chromosome 17, clone RP11-577I13, co... 40 2.5
14gb|AC008903.7| Homo sapiens chromosome 5 clone CTD-2252H11, comp... 40 2.5
15gb|AC138782.4| Homo sapiens BAC clone RP11-264J9 from 4, complet... 40 2.5
16gb|AC011662.1|AC011662 Drosophila melanogaster, chromosome 2L, r... 40 2.5
17gb|AE003657.3| Drosophila melanogaster chromosome 2L, section 66... 40 2.5
18emb|BX004994.6| Zebrafish DNA sequence from clone DKEY-24J15 in ... 40 2.5
19emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB1... 40 2.5 
>gb|AY189120.1| Mus musculus nebulin (Neb) gene, complete sequence
          Length = 202402

 Score = 46.1 bits (23), Expect = 0.041
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 144    agaaaaattagacaaattatata 166
              |||||||||||||||||||||||
Sbjct: 145677 agaaaaattagacaaattatata 145655
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>dbj|AK015137.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4930414H07 product:unclassifiable, full
           insert sequence
          Length = 815

 Score = 46.1 bits (23), Expect = 0.041
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 132 ggaaaatttgtaagaaaaattag 154
           |||||||||||||||||||||||
Sbjct: 741 ggaaaatttgtaagaaaaattag 763
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>emb|AL844571.8| Mouse DNA sequence from clone RP23-224C23 on chromosome 2, complete
              sequence
          Length = 182273

 Score = 46.1 bits (23), Expect = 0.041
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 144    agaaaaattagacaaattatata 166
              |||||||||||||||||||||||
Sbjct: 114165 agaaaaattagacaaattatata 114187
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>emb|AL845262.3| Mouse DNA sequence from clone RP23-14N22 on chromosome 2, complete
           sequence
          Length = 207718

 Score = 46.1 bits (23), Expect = 0.041
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 132 ggaaaatttgtaagaaaaattag 154
           |||||||||||||||||||||||
Sbjct: 566 ggaaaatttgtaagaaaaattag 588
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>emb|AL808102.8| Mouse DNA sequence from clone RP23-192O6 on chromosome 2, complete
              sequence
          Length = 178743

 Score = 46.1 bits (23), Expect = 0.041
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 132    ggaaaatttgtaagaaaaattag 154
              |||||||||||||||||||||||
Sbjct: 177309 ggaaaatttgtaagaaaaattag 177331
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>gb|AC116507.9| Mus musculus chromosome 19, clone RP24-309C17, complete sequence
          Length = 168364

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   tttgtaagaaaaattagaca 157
             ||||||||||||||||||||
Sbjct: 17527 tttgtaagaaaaattagaca 17546
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>ref|XM_723983.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY01338)
            partial mRNA
          Length = 10932

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 149  aattagacaaattatatatt 168
            ||||||||||||||||||||
Sbjct: 9811 aattagacaaattatatatt 9792
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>ref|XM_664249.1| Plasmodium berghei strain ANKA hypothetical protein (PB402323.00.0)
           partial mRNA
          Length = 414

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 149 aattagacaaattatatatt 168
           ||||||||||||||||||||
Sbjct: 238 aattagacaaattatatatt 219
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>tpg|BK003530.1| TPA: TPA_inf: Drosophila melanogaster HDC03016 (HDC03016) gene,
           complete cds
          Length = 4828

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 133 gaaaatttgtaagaaaaatt 152
           ||||||||||||||||||||
Sbjct: 923 gaaaatttgtaagaaaaatt 904
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>gb|AC090079.6| Homo sapiens chromosome 17, clone CTD-2535P7, complete sequence
          Length = 200477

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 143   aagaaaaattagacaaatta 162
             ||||||||||||||||||||
Sbjct: 75577 aagaaaaattagacaaatta 75596
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>gb|AC105314.5| Homo sapiens BAC clone RP11-312H15 from 4, complete sequence
          Length = 193665

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 44   caatgtggggaagcagcgtcaaaa 67
            |||||||||||||||| |||||||
Sbjct: 1210 caatgtggggaagcagggtcaaaa 1187
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>gb|AC010599.8| Homo sapiens chromosome 5 clone CTC-561L20, complete sequence
          Length = 114411

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 150   attagacaaattatatattg 169
             ||||||||||||||||||||
Sbjct: 65631 attagacaaattatatattg 65612
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>gb|AC090614.5| Homo sapiens chromosome 17, clone RP11-577I13, complete sequence
          Length = 230956

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 143   aagaaaaattagacaaatta 162
             ||||||||||||||||||||
Sbjct: 36855 aagaaaaattagacaaatta 36874
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>gb|AC008903.7| Homo sapiens chromosome 5 clone CTD-2252H11, complete sequence
          Length = 148688

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 150   attagacaaattatatattg 169
             ||||||||||||||||||||
Sbjct: 49360 attagacaaattatatattg 49341
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>gb|AC138782.4| Homo sapiens BAC clone RP11-264J9 from 4, complete sequence
          Length = 64744

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 44    caatgtggggaagcagcgtcaaaa 67
             |||||||||||||||| |||||||
Sbjct: 63954 caatgtggggaagcagggtcaaaa 63931
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>gb|AC011662.1|AC011662 Drosophila melanogaster, chromosome 2L, region 36D-, BAC clones BACR01G10
              and BACR05I08, complete sequence
          Length = 294942

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 133    gaaaatttgtaagaaaaatt 152
              ||||||||||||||||||||
Sbjct: 225657 gaaaatttgtaagaaaaatt 225638
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>gb|AE003657.3| Drosophila melanogaster chromosome 2L, section 66 of 83 of the complete
              sequence
          Length = 265254

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 133    gaaaatttgtaagaaaaatt 152
              ||||||||||||||||||||
Sbjct: 137039 gaaaatttgtaagaaaaatt 137020
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>emb|BX004994.6| Zebrafish DNA sequence from clone DKEY-24J15 in linkage group 22,
              complete sequence
          Length = 211945

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 149    aattagacaaattatatatt 168
              ||||||||||||||||||||
Sbjct: 104151 aattagacaaattatatatt 104170
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>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica
          Length = 3633272

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 179    cactttcactccgtcatatc 198
              ||||||||||||||||||||
Sbjct: 326198 cactttcactccgtcatatc 326217


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,071,029
Number of Sequences: 3902068
Number of extensions: 2071029
Number of successful extensions: 146413
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 146347
Number of HSP's gapped (non-prelim): 66
length of query: 202
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 180
effective length of database: 17,147,199,772
effective search space: 3086495958960
effective search space used: 3086495958960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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