ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl31h01 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ966349.1| Hordeum vulgare subsp. vulgare mRNA for lipoxygenase-like protein (lox gene) Length = 3123 Score = 781 bits (394), Expect = 0.0 Identities = 397/398 (99%) Strand = Plus / Minus Query: 14 tgcaattaaatcttctcctatctgggcccaaatcaatggcgattcggccttcgtggcgag 73 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3077 tgcaattaaatcttctcctatctgggcccaaatcaatggcgattcggccttcgtggcgag 3018 Query: 74 ggcccaaatcaatggcgattctcttatatgtacgtacttttccctgagacgttcccggcc 133 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3017 ggcccaaatcaatggcgattctcttatatgtacgtacttttccctgagacgttcccggcc 2958 Query: 134 caaagtatatcgaggctgaaaaattcccacggtccgcttcaattcactctctgcgggcta 193 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2957 caaagtatatcgaggctgaaaaattcccacggtccgcttcaattcactctctgcgggcta 2898 Query: 194 gatggtgacgctgttcgggacgcctcggcaggtgatgcccggcccggacgacggcgccat 253 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2897 gatggtgacgctgttcgggacgcctcggcaggtgatgcccggcccggacgacggcgccat 2838 Query: 254 gagctcgtacggcagcacgccggcgccacagcggttgcgccgggcggggtcagcgttgcg 313 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2837 gagctcgtacggcagcacgccggcgccacagcggttgcgccgggcggggtcagcgttgcg 2778 Query: 314 ccgctcgatctcctcctcggcgcggcgcacttccgccgcgaactcttgcgcagcagccag 373 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2777 ccgctcgatctcctcctcggcgcggcgcacttccgccgcgaactcttgcgcagcagccag 2718 Query: 374 cgccgccgggtccgccgtccactcctcgttgggccgct 411 |||||||||||||||||||||||||||||||| ||||| Sbjct: 2717 cgccgccgggtccgccgtccactcctcgttggaccgct 2680
>ref|XM_462649.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2700 Score = 260 bits (131), Expect = 3e-66 Identities = 191/211 (90%) Strand = Plus / Minus Query: 201 acgctgttcgggacgcctcggcaggtgatgcccggcccggacgacggcgccatgagctcg 260 |||||||| || ||||| ||||||||||||||||| ||||||||||||||||| |||||| Sbjct: 2690 acgctgtttggcacgccccggcaggtgatgcccggtccggacgacggcgccatcagctcg 2631 Query: 261 tacggcagcacgccggcgccacagcggttgcgccgggcggggtcagcgttgcgccgctcg 320 |||||||||||||||||||| || ||||||||||||| |||||| || |||||||||||| Sbjct: 2630 tacggcagcacgccggcgccgcaacggttgcgccgggaggggtcggcattgcgccgctcg 2571 Query: 321 atctcctcctcggcgcggcgcacttccgccgcgaactcttgcgcagcagccagcgccgcc 380 ||||||||||||||||||||||| || ||||||||||| |||| || |||||||||||| Sbjct: 2570 atctcctcctcggcgcggcgcacgtcggccgcgaactcccgcgcggccgccagcgccgcc 2511 Query: 381 gggtccgccgtccactcctcgttgggccgct 411 ||||| ||||||||| |||||| ||| |||| Sbjct: 2510 gggtcggccgtccacgcctcgtcggggcgct 2480
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 260 bits (131), Expect = 3e-66 Identities = 191/211 (90%) Strand = Plus / Minus Query: 201 acgctgttcgggacgcctcggcaggtgatgcccggcccggacgacggcgccatgagctcg 260 |||||||| || ||||| ||||||||||||||||| ||||||||||||||||| |||||| Sbjct: 22283720 acgctgtttggcacgccccggcaggtgatgcccggtccggacgacggcgccatcagctcg 22283661 Query: 261 tacggcagcacgccggcgccacagcggttgcgccgggcggggtcagcgttgcgccgctcg 320 |||||||||||||||||||| || ||||||||||||| |||||| || |||||||||||| Sbjct: 22283660 tacggcagcacgccggcgccgcaacggttgcgccgggaggggtcggcattgcgccgctcg 22283601 Query: 321 atctcctcctcggcgcggcgcacttccgccgcgaactcttgcgcagcagccagcgccgcc 380 ||||||||||||||||||||||| || ||||||||||| |||| || |||||||||||| Sbjct: 22283600 atctcctcctcggcgcggcgcacgtcggccgcgaactcccgcgcggccgccagcgccgcc 22283541 Query: 381 gggtccgccgtccactcctcgttgggccgct 411 ||||| ||||||||| |||||| ||| |||| Sbjct: 22283540 gggtcggccgtccacgcctcgtcggggcgct 22283510
>emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22, complete sequence Length = 147214 Score = 260 bits (131), Expect = 3e-66 Identities = 191/211 (90%) Strand = Plus / Minus Query: 201 acgctgttcgggacgcctcggcaggtgatgcccggcccggacgacggcgccatgagctcg 260 |||||||| || ||||| ||||||||||||||||| ||||||||||||||||| |||||| Sbjct: 34622 acgctgtttggcacgccccggcaggtgatgcccggtccggacgacggcgccatcagctcg 34563 Query: 261 tacggcagcacgccggcgccacagcggttgcgccgggcggggtcagcgttgcgccgctcg 320 |||||||||||||||||||| || ||||||||||||| |||||| || |||||||||||| Sbjct: 34562 tacggcagcacgccggcgccgcaacggttgcgccgggaggggtcggcattgcgccgctcg 34503 Query: 321 atctcctcctcggcgcggcgcacttccgccgcgaactcttgcgcagcagccagcgccgcc 380 ||||||||||||||||||||||| || ||||||||||| |||| || |||||||||||| Sbjct: 34502 atctcctcctcggcgcggcgcacgtcggccgcgaactcccgcgcggccgccagcgccgcc 34443 Query: 381 gggtccgccgtccactcctcgttgggccgct 411 ||||| ||||||||| |||||| ||| |||| Sbjct: 34442 gggtcggccgtccacgcctcgtcggggcgct 34412
>ref|XM_470535.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2718 Score = 61.9 bits (31), Expect = 2e-06 Identities = 82/99 (82%) Strand = Plus / Minus Query: 258 tcgtacggcagcacgccggcgccacagcggttgcgccgggcggggtcagcgttgcgccgc 317 |||||||||||||| |||||||| || ||||| |||| || |||| ||||| |||| | Sbjct: 2651 tcgtacggcagcaccccggcgccgcaccggttcttccggccgtggtcggcgttccgcctc 2592 Query: 318 tcgatctcctcctcggcgcggcgcacttccgccgcgaac 356 ||||| |||||||||||| ||||| || ||||||||| Sbjct: 2591 tcgatggtctcctcggcgcgtcgcacatcggccgcgaac 2553
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 61.9 bits (31), Expect = 2e-06 Identities = 82/99 (82%) Strand = Plus / Minus Query: 258 tcgtacggcagcacgccggcgccacagcggttgcgccgggcggggtcagcgttgcgccgc 317 |||||||||||||| |||||||| || ||||| |||| || |||| ||||| |||| | Sbjct: 4174701 tcgtacggcagcaccccggcgccgcaccggttcttccggccgtggtcggcgttccgcctc 4174642 Query: 318 tcgatctcctcctcggcgcggcgcacttccgccgcgaac 356 ||||| |||||||||||| ||||| || ||||||||| Sbjct: 4174641 tcgatggtctcctcggcgcgtcgcacatcggccgcgaac 4174603
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 61.9 bits (31), Expect = 2e-06 Identities = 82/99 (82%) Strand = Plus / Minus Query: 258 tcgtacggcagcacgccggcgccacagcggttgcgccgggcggggtcagcgttgcgccgc 317 |||||||||||||| |||||||| || ||||| |||| || |||| ||||| |||| | Sbjct: 4174810 tcgtacggcagcaccccggcgccgcaccggttcttccggccgtggtcggcgttccgcctc 4174751 Query: 318 tcgatctcctcctcggcgcggcgcacttccgccgcgaac 356 ||||| |||||||||||| ||||| || ||||||||| Sbjct: 4174750 tcgatggtctcctcggcgcgtcgcacatcggccgcgaac 4174712
>gb|AC125472.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0050H14, complete sequence Length = 142245 Score = 61.9 bits (31), Expect = 2e-06 Identities = 82/99 (82%) Strand = Plus / Minus Query: 258 tcgtacggcagcacgccggcgccacagcggttgcgccgggcggggtcagcgttgcgccgc 317 |||||||||||||| |||||||| || ||||| |||| || |||| ||||| |||| | Sbjct: 75338 tcgtacggcagcaccccggcgccgcaccggttcttccggccgtggtcggcgttccgcctc 75279 Query: 318 tcgatctcctcctcggcgcggcgcacttccgccgcgaac 356 ||||| |||||||||||| ||||| || ||||||||| Sbjct: 75278 tcgatggtctcctcggcgcgtcgcacatcggccgcgaac 75240
>dbj|AK109440.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-A07, full insert sequence Length = 1212 Score = 61.9 bits (31), Expect = 2e-06 Identities = 82/99 (82%) Strand = Plus / Minus Query: 258 tcgtacggcagcacgccggcgccacagcggttgcgccgggcggggtcagcgttgcgccgc 317 |||||||||||||| |||||||| || ||||| |||| || |||| ||||| |||| | Sbjct: 1055 tcgtacggcagcaccccggcgccgcaccggttcttccggccgtggtcggcgttccgcctc 996 Query: 318 tcgatctcctcctcggcgcggcgcacttccgccgcgaac 356 ||||| |||||||||||| ||||| || ||||||||| Sbjct: 995 tcgatggtctcctcggcgcgtcgcacatcggccgcgaac 957
>dbj|AK121637.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033052A03, full insert sequence Length = 3067 Score = 61.9 bits (31), Expect = 2e-06 Identities = 82/99 (82%) Strand = Plus / Minus Query: 258 tcgtacggcagcacgccggcgccacagcggttgcgccgggcggggtcagcgttgcgccgc 317 |||||||||||||| |||||||| || ||||| |||| || |||| ||||| |||| | Sbjct: 2890 tcgtacggcagcaccccggcgccgcaccggttcttccggccgtggtcggcgttccgcctc 2831 Query: 318 tcgatctcctcctcggcgcggcgcacttccgccgcgaac 356 ||||| |||||||||||| ||||| || ||||||||| Sbjct: 2830 tcgatggtctcctcggcgcgtcgcacatcggccgcgaac 2792
>gb|AC126223.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0076N15, complete sequence Length = 134307 Score = 61.9 bits (31), Expect = 2e-06 Identities = 82/99 (82%) Strand = Plus / Minus Query: 258 tcgtacggcagcacgccggcgccacagcggttgcgccgggcggggtcagcgttgcgccgc 317 |||||||||||||| |||||||| || ||||| |||| || |||| ||||| |||| | Sbjct: 3316 tcgtacggcagcaccccggcgccgcaccggttcttccggccgtggtcggcgttccgcctc 3257 Query: 318 tcgatctcctcctcggcgcggcgcacttccgccgcgaac 356 ||||| |||||||||||| ||||| || ||||||||| Sbjct: 3256 tcgatggtctcctcggcgcgtcgcacatcggccgcgaac 3218
>ref|XM_423398.1| PREDICTED: Gallus gallus similar to cingulin (LOC425665), mRNA Length = 3681 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 313 gccgctcgatctcctcctcggc 334 |||||||||||||||||||||| Sbjct: 3439 gccgctcgatctcctcctcggc 3418
>gb|AE011858.1| Xanthomonas axonopodis pv. citri str. 306, section 236 of 469 of the complete genome Length = 10902 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 369 gccagcgccgccgggtccgccg 390 |||||||||||||||||||||| Sbjct: 4399 gccagcgccgccgggtccgccg 4420
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 cgctcgatctcctcctcggc 334 |||||||||||||||||||| Sbjct: 1405896 cgctcgatctcctcctcggc 1405877
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 371 cagcgccgccgggtccgccg 390 |||||||||||||||||||| Sbjct: 641071 cagcgccgccgggtccgccg 641052
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 gccagcgccgccgggtccgc 388 |||||||||||||||||||| Sbjct: 595669 gccagcgccgccgggtccgc 595650
>gb|DQ187985.1| Pseudomonas syringae tabtoxin biosynthetic gene cluster, complete sequence Length = 22972 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 ccggcccggacgacggcgcc 251 |||||||||||||||||||| Sbjct: 3634 ccggcccggacgacggcgcc 3653
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 370 ccagcgccgccgggtccgcc 389 |||||||||||||||||||| Sbjct: 6144549 ccagcgccgccgggtccgcc 6144568
>gb|M88485.1|PSETABA Pseudomonas syringae tabA and tabB genes, complete cds Length = 3378 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 ccggcccggacgacggcgcc 251 |||||||||||||||||||| Sbjct: 2761 ccggcccggacgacggcgcc 2742
>gb|M63291.1|DROADHDS Drosophila silvestris alcohol dehydrogenase gene, complete cds Length = 1635 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 95 tcttatatgtacgtacttttccctgaga 122 |||||| ||||| ||||||||||||||| Sbjct: 189 tcttatttgtacatacttttccctgaga 162 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,449,348 Number of Sequences: 3902068 Number of extensions: 2449348 Number of successful extensions: 44248 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43826 Number of HSP's gapped (non-prelim): 420 length of query: 411 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 389 effective length of database: 17,147,199,772 effective search space: 6670260711308 effective search space used: 6670260711308 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
