ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl31g12 |
|---|---|
| Clone Library Name | barley_pub |
>NU2M_ASTPE (Q33819) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH| dehydrogenase subunit 2) Length = 354 Score = 29.6 bits (65), Expect = 2.1 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 8/64 (12%) Frame = -2 Query: 242 LLEPGNEQGFFFLLLSNGMFLCLLQCYYFFSVLTQFVTMYCG--------FGVFCRLQYI 87 L+EP N+ F + L+ G+ L L C+Y+F + Q V G F L Y+ Sbjct: 86 LMEPLNQATSFLMTLALGLKLGLFPCHYWFPDVIQGVGFIQGLVLSTWQKIAPFAVLVYV 145 Query: 86 VSAL 75 V +L Sbjct: 146 VESL 149
>TILS_BUCBP (Q89AX3) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)| (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) Length = 438 Score = 29.6 bits (65), Expect = 2.1 Identities = 15/42 (35%), Positives = 24/42 (57%) Frame = +3 Query: 24 RLTVISQNNLRFSFRLLQC*HDIL*PTEYTKTTVHCYKLCKN 149 +L + +NNL F+FR + H + +E K + HC K+C N Sbjct: 30 QLLKLKKNNLNFTFRAIHINHQLHPDSE--KWSDHCKKICIN 69
>AFAD_HUMAN (P55196) Afadin (AF-6 protein)| Length = 1816 Score = 28.5 bits (62), Expect = 4.6 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = +2 Query: 161 SNIGGDTKTSHLTEEEKKSLVHSQAPARVRPPSPRDQNP 277 S + + + H +E + L+ +AP RPP PRD P Sbjct: 1641 SRLEAERRRQH--DEAARRLLEPEAPGLCRPPLPRDYEP 1677
>NAD2_CAEEL (P32739) Sodium-dependent high-affinity dicarboxylate transporter 2| (Na(+)/dicarboxylate cotransporter 2) (NaDC-2) (ceNaDC2) Length = 551 Score = 27.7 bits (60), Expect = 7.9 Identities = 10/21 (47%), Positives = 15/21 (71%) Frame = -1 Query: 198 VKWDVFVSPPMLLFLFSSYTI 136 ++W VF PPM ++L +SY I Sbjct: 241 LQWMVFAIPPMFVYLLASYII 261
>AF17_HUMAN (P55198) Protein AF-17| Length = 1093 Score = 27.7 bits (60), Expect = 7.9 Identities = 12/35 (34%), Positives = 17/35 (48%) Frame = +2 Query: 173 GDTKTSHLTEEEKKSLVHSQAPARVRPPSPRDQNP 277 GD K+ H+T + H + PA P P D+ P Sbjct: 425 GDYKSPHVTGSGASAGTHKRMPALSATPVPADETP 459
>ISDA_STAAW (Q7A152) Iron-regulated surface determinant protein A precursor| (Staphylococcal transferrin-binding protein A) (Fur-regulated protein A) Length = 350 Score = 27.7 bits (60), Expect = 7.9 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 2/73 (2%) Frame = +2 Query: 2 KPSKPRNEADSNKPK*S*IQFSTPTMLTRYIVTDRIHQNHSTLLQIV*ELK--RNSNIGG 175 KP++P+ + KP ++ PT+ T T ++ NHST + K + Sbjct: 198 KPAQPKTPTEQTKPVQPKVEKVKPTVTT----TSKVEDNHSTKVVSTDTTKDQTKTQTAH 253 Query: 176 DTKTSHLTEEEKK 214 KT+ +E+ K Sbjct: 254 TVKTAQTAQEQNK 266
>ISDA_STAAS (Q6GA85) Iron-regulated surface determinant protein A precursor| (Staphylococcal transferrin-binding protein A) (Fur-regulated protein A) Length = 350 Score = 27.7 bits (60), Expect = 7.9 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 2/73 (2%) Frame = +2 Query: 2 KPSKPRNEADSNKPK*S*IQFSTPTMLTRYIVTDRIHQNHSTLLQIV*ELK--RNSNIGG 175 KP++P+ + KP ++ PT+ T T ++ NHST + K + Sbjct: 198 KPAQPKTPTEQTKPVQPKVEKVKPTVTT----TSKVEDNHSTKVVSTDTTKDQTKTQTAH 253 Query: 176 DTKTSHLTEEEKK 214 KT+ +E+ K Sbjct: 254 TVKTAQTAQEQNK 266
>ISDA_STAAN (Q7A655) Iron-regulated surface determinant protein A precursor| (Staphylococcal transferrin-binding protein A) (Fur-regulated protein A) Length = 350 Score = 27.7 bits (60), Expect = 7.9 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 2/73 (2%) Frame = +2 Query: 2 KPSKPRNEADSNKPK*S*IQFSTPTMLTRYIVTDRIHQNHSTLLQIV*ELK--RNSNIGG 175 KP++P+ + KP ++ PT+ T T ++ NHST + K + Sbjct: 198 KPAQPKTPTEQTKPVQPKVEKVKPTVTT----TSKVEDNHSTKVVSTDTTKDQTKTQTAH 253 Query: 176 DTKTSHLTEEEKK 214 KT+ +E+ K Sbjct: 254 TVKTAQTAQEQNK 266
>ISDA_STAAM (Q99UX4) Iron-regulated surface determinant protein A precursor| (Staphylococcal transferrin-binding protein A) (Fur-regulated protein A) Length = 350 Score = 27.7 bits (60), Expect = 7.9 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 2/73 (2%) Frame = +2 Query: 2 KPSKPRNEADSNKPK*S*IQFSTPTMLTRYIVTDRIHQNHSTLLQIV*ELK--RNSNIGG 175 KP++P+ + KP ++ PT+ T T ++ NHST + K + Sbjct: 198 KPAQPKTPTEQTKPVQPKVEKVKPTVTT----TSKVEDNHSTKVVSTDTTKDQTKTQTAH 253 Query: 176 DTKTSHLTEEEKK 214 KT+ +E+ K Sbjct: 254 TVKTAQTAQEQNK 266
>ISDA_STAAC (Q5HGV4) Iron-regulated surface determinant protein A precursor| (Staphylococcal transferrin-binding protein A) (Fur-regulated protein A) Length = 350 Score = 27.7 bits (60), Expect = 7.9 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 2/73 (2%) Frame = +2 Query: 2 KPSKPRNEADSNKPK*S*IQFSTPTMLTRYIVTDRIHQNHSTLLQIV*ELK--RNSNIGG 175 KP++P+ + KP ++ PT+ T T ++ NHST + K + Sbjct: 198 KPAQPKTPTEQTKPVQPKVEKVKPTVTT----TSKVEDNHSTKVVSTDTTKDQTKTQTAH 253 Query: 176 DTKTSHLTEEEKK 214 KT+ +E+ K Sbjct: 254 TVKTAQTAQEQNK 266 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,846,446 Number of Sequences: 219361 Number of extensions: 706889 Number of successful extensions: 1973 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 1925 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1973 length of database: 80,573,946 effective HSP length: 68 effective length of database: 65,657,398 effective search space used: 1575777552 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
