ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl31g08 |
|---|---|
| Clone Library Name | barley_pub |
>G11A_ORYSA (P47997) Protein kinase G11A (EC 2.7.11.1)| Length = 589 Score = 31.6 bits (70), Expect = 0.47 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = -1 Query: 404 GLNWALIRWTAPPETPKSI 348 G+NWALIR +PPE P+ + Sbjct: 535 GVNWALIRCASPPEVPRPV 553
>ATPA_BUCAI (P57122) ATP synthase alpha chain (EC 3.6.3.14) (ATP synthase F1| sector alpha subunit) Length = 512 Score = 30.4 bits (67), Expect = 1.1 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = +2 Query: 8 YLMVLTRNKVTGTTPDLTQLLYIPTLAGD 94 Y+ +T+NK+TG T +T L I T +GD Sbjct: 308 YVQKITKNKITGKTGSITALPIIETQSGD 336
>KPK1_PHAVU (P15792) Protein kinase PVPK-1 (EC 2.7.11.1)| Length = 609 Score = 30.4 bits (67), Expect = 1.1 Identities = 10/19 (52%), Positives = 14/19 (73%) Frame = -1 Query: 401 LNWALIRWTAPPETPKSIV 345 +NWALIR PPE P+ ++ Sbjct: 568 VNWALIRCATPPEVPRQVI 586
>SCRN1_HUMAN (Q12765) Secernin-1| Length = 414 Score = 29.6 bits (65), Expect = 1.8 Identities = 15/46 (32%), Positives = 21/46 (45%) Frame = +3 Query: 33 KLQAQHPTLLSYSTSQHWQVTTDNSSSTEKLQGGGDRGNCGTTTSS 170 K+ A+HP L SY+ SQ W + +E D +CG S Sbjct: 196 KMDAEHPELRSYAQSQGWWTGEGEFNFSEVFSPVEDHLDCGAGKDS 241
>SCRN1_MOUSE (Q9CZC8) Secernin-1| Length = 414 Score = 29.3 bits (64), Expect = 2.3 Identities = 13/40 (32%), Positives = 19/40 (47%) Frame = +3 Query: 33 KLQAQHPTLLSYSTSQHWQVTTDNSSSTEKLQGGGDRGNC 152 KL +HP L +Y+ SQ W D + + DR +C Sbjct: 196 KLDEEHPELRTYAQSQGWWTGDDEFNFAQVFSPADDRLDC 235
>KPK7_ARATH (Q05999) Putative serine/threonine-protein kinase PK7 (EC 2.7.11.1)| Length = 578 Score = 29.3 bits (64), Expect = 2.3 Identities = 10/18 (55%), Positives = 15/18 (83%) Frame = -1 Query: 401 LNWALIRWTAPPETPKSI 348 +NWALIR T+PP+ P+ + Sbjct: 519 VNWALIRCTSPPQIPQPV 536
>PHOT1_ARATH (O48963) Phototropin-1 (EC 2.7.11.1) (Non-phototropic hypocotyl| protein 1) (Root phototropism protein 1) Length = 996 Score = 28.5 bits (62), Expect = 4.0 Identities = 11/14 (78%), Positives = 12/14 (85%) Frame = -1 Query: 404 GLNWALIRWTAPPE 363 G+NWALIR T PPE Sbjct: 954 GINWALIRCTNPPE 967
>CX32_MICUN (P51915) Gap junction Cx32.2 protein (Connexin-32.2)| Length = 284 Score = 28.1 bits (61), Expect = 5.2 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = -2 Query: 163 VVVPQFPLSPPPCSFSVEDELS 98 ++VP FP S PC F+VE +S Sbjct: 165 IMVPMFPCSKKPCPFTVECYMS 186
>ABCG2_RAT (Q80W57) ATP-binding cassette sub-family G member 2 (Breast cancer| resistance protein 1 homolog) Length = 657 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +2 Query: 104 LIFNRKTAGGWGQGELWDYYF*LPRYGYSSEQ 199 L+ N +T G W W YF +PRYG+++ Q Sbjct: 554 LLVNLRTIGPWLS---WLQYFSIPRYGFTALQ 582
>ABCG2_MOUSE (Q7TMS5) ATP-binding cassette sub-family G member 2 (Breast cancer| resistance protein 1 homolog) Length = 657 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +2 Query: 104 LIFNRKTAGGWGQGELWDYYF*LPRYGYSSEQ 199 L+ N +T G W W YF +PRYG+++ Q Sbjct: 554 LLVNLRTIGPWLS---WLQYFSIPRYGFTALQ 582
>TRI37_HUMAN (O94972) Tripartite motif protein 37 (Mulibrey nanism protein)| Length = 964 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/33 (30%), Positives = 17/33 (51%) Frame = +3 Query: 30 IKLQAQHPTLLSYSTSQHWQVTTDNSSSTEKLQ 128 ++ Q + PT S QHW +T ++ T +Q Sbjct: 399 LRFQVRSPTFFQKSRDQHWYITQLEAAQTSYIQ 431
>ATS20_MOUSE (P59511) ADAMTS-20 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 20) (ADAM-TS 20) (ADAM-TS20) Length = 1906 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = -3 Query: 375 CTAGDPEKHRRSLNPYGSRGTEEEGRQVPRV 283 C GD + +N +G R E E R++PRV Sbjct: 978 CGGGDKTRESYCVNGFGHRLAESECRELPRV 1008
>SYG_BOMMO (Q04451) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine--tRNA| ligase) (GlyRS) Length = 680 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = -2 Query: 109 DELSVVTCQCWDVE*LSKVGCCAC 38 +E++ C CWD E LS G C Sbjct: 379 NEMAHYACDCWDAECLSSYGWIEC 402
>ABCG2_PIG (Q8MIB3) ATP-binding cassette sub-family G member 2 (Brain| multidrug resistance protein) Length = 656 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = +2 Query: 104 LIFNRKTAGGWGQGELWDYYF*LPRYGYSSEQ 199 L+ N KT W W YF +PRYG+S+ Q Sbjct: 555 LLVNLKTVVPWLS---WLQYFSIPRYGFSALQ 583
>PHOT2_ARATH (P93025) Phototropin-2 (EC 2.7.11.1) (Defective in chloroplast| avoidance protein 1) (Non phototropic hypocotyl 1-like protein 1) (NPH1-like 1) (AtKin7) Length = 915 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 2/23 (8%) Frame = -1 Query: 404 GLNWALIRWTAPP--ETPKSIVE 342 G+NW LIR +PP + P SI+E Sbjct: 866 GINWPLIRGMSPPPLDAPLSIIE 888
>CDKL2_MACFA (Q4R7T5) Cyclin-dependent kinase-like 2 (EC 2.7.11.22)| Length = 570 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/40 (30%), Positives = 19/40 (47%) Frame = +1 Query: 247 KSSNSMSSPFIRNSRHLPSFFFRATATVRVEASTMLFGVS 366 + + S PF++ +RH PS + T V + LF S Sbjct: 444 EKTKKCSIPFVKPNRHSPSGIYNINVTTLVSSEKSLFRAS 483 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,125,499 Number of Sequences: 219361 Number of extensions: 740452 Number of successful extensions: 2202 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2165 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2201 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
