ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbastl31g08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK065005.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001E11, full insert sequence Length = 2911 Score = 115 bits (58), Expect = 1e-22 Identities = 76/82 (92%) Strand = Plus / Minus Query: 237 ccaccattagaagagctcaaactcgatgtcgtctccgttcatccggaactcgaggcactt 296 |||||| ||||||||||||||||| ||||||||||| |||| || |||||| |||||||| Sbjct: 2707 ccaccactagaagagctcaaactcaatgtcgtctccattcagcctgaactccaggcactt 2648 Query: 297 gccttccttcttcttccgtgcc 318 |||||||||||||||||||||| Sbjct: 2647 gccttccttcttcttccgtgcc 2626 Score = 75.8 bits (38), Expect = 1e-10 Identities = 50/54 (92%) Strand = Plus / Minus Query: 351 gcttttcggggtctccggcggtgcagtccaacggatcaaggcccagttcaggcc 404 ||||||||| ||||| |||||||||||||| |||||||| |||||||||||||| Sbjct: 2602 gcttttcggagtctcaggcggtgcagtccatcggatcaatgcccagttcaggcc 2549 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Minus Query: 12 tgatggtattaacaaggaataaagt 36 ||||||||||||||||||||||||| Sbjct: 2885 tgatggtattaacaaggaataaagt 2861 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 cccaacattggcaggtgaca 95 |||||||||||||||||||| Sbjct: 2825 cccaacattggcaggtgaca 2806
>gb|AC119820.20| Mus musculus chromosome 1, clone RP23-148M18, complete sequence Length = 183287 Score = 61.9 bits (31), Expect = 1e-06 Identities = 31/31 (100%) Strand = Plus / Plus Query: 205 tactaccactacaacttctactgctactact 235 ||||||||||||||||||||||||||||||| Sbjct: 96038 tactaccactacaacttctactgctactact 96068
>gb|AC158793.4| Mus musculus chromosome 1, clone RP23-269P13, complete sequence Length = 183447 Score = 61.9 bits (31), Expect = 1e-06 Identities = 31/31 (100%) Strand = Plus / Plus Query: 205 tactaccactacaacttctactgctactact 235 ||||||||||||||||||||||||||||||| Sbjct: 170397 tactaccactacaacttctactgctactact 170427
>gb|AY110365.1| Zea mays CL38215_1 mRNA sequence Length = 607 Score = 60.0 bits (30), Expect = 6e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 359 gggtctccggcggtgcagtccaacggatcaaggcccagttcaggcc 404 ||||||| || ||||| ||||| ||||||||||||||||||||||| Sbjct: 309 gggtctctggtggtgcggtccaccggatcaaggcccagttcaggcc 354 Score = 58.0 bits (29), Expect = 2e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 7 atatctgatggtattaacaaggaataaagttacaggc 43 |||| ||||||||||||||||| |||||||||||||| Sbjct: 15 atatttgatggtattaacaaggcataaagttacaggc 51 Score = 44.1 bits (22), Expect = 0.35 Identities = 34/38 (89%) Strand = Plus / Plus Query: 247 aagagctcaaactcgatgtcgtctccgttcatccggaa 284 |||||||| |||||||||||||| || |||| |||||| Sbjct: 203 aagagctcgaactcgatgtcgtcaccattcagccggaa 240
>emb|AL592077.8| Zebrafish DNA sequence from clone XX-DZ35C18, complete sequence Length = 53352 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 205 tactaccactacaacttctactgctactactgc 237 |||||||||||| ||| |||||||||||||||| Sbjct: 26824 tactaccactactactactactgctactactgc 26856 Score = 44.1 bits (22), Expect = 0.35 Identities = 34/38 (89%) Strand = Plus / Plus Query: 205 tactaccactacaacttctactgctactactgccacca 242 |||||| ||||| ||| |||||||||||||| |||||| Sbjct: 27082 tactactactactactactactgctactactaccacca 27119 Score = 44.1 bits (22), Expect = 0.35 Identities = 34/38 (89%) Strand = Plus / Plus Query: 205 tactaccactacaacttctactgctactactgccacca 242 |||||| ||||| ||| |||||||||||||| |||||| Sbjct: 26693 tactactactactactactactgctactactaccacca 26730 Score = 44.1 bits (22), Expect = 0.35 Identities = 31/34 (91%) Strand = Plus / Plus Query: 209 accactacaacttctactgctactactgccacca 242 |||||||| ||| |||||||||||||| |||||| Sbjct: 26460 accactactactactactgctactactcccacca 26493 Score = 44.1 bits (22), Expect = 0.35 Identities = 34/38 (89%) Strand = Plus / Plus Query: 205 tactaccactacaacttctactgctactactgccacca 242 |||||| ||||| ||| |||||||||||||| |||||| Sbjct: 26423 tactactactactactactactgctactactcccacca 26460
>emb|BX321906.30| Zebrafish DNA sequence from clone DKEYP-45E9 in linkage group 10, complete sequence Length = 164266 Score = 48.1 bits (24), Expect = 0.022 Identities = 27/28 (96%) Strand = Plus / Plus Query: 208 taccactacaacttctactgctactact 235 ||||||||||||| |||||||||||||| Sbjct: 111322 taccactacaactactactgctactact 111349
>emb|CR762485.16| Zebrafish DNA sequence from clone DKEY-269K12 in linkage group 19, complete sequence Length = 171225 Score = 46.1 bits (23), Expect = 0.088 Identities = 29/31 (93%) Strand = Plus / Minus Query: 205 tactaccactacaacttctactgctactact 235 |||||| ||||||||| |||||||||||||| Sbjct: 83500 tactactactacaactactactgctactact 83470
>gb|AC121612.2| Mus musculus BAC clone RP23-337A17 from 6, complete sequence Length = 209548 Score = 46.1 bits (23), Expect = 0.088 Identities = 29/31 (93%) Strand = Plus / Minus Query: 205 tactaccactacaacttctactgctactact 235 |||||| |||||| ||||||||||||||||| Sbjct: 14388 tactactactacatcttctactgctactact 14358
>gb|AC157606.5| Mus musculus chromosome 7, clone RP23-466J2, complete sequence Length = 174676 Score = 46.1 bits (23), Expect = 0.088 Identities = 29/31 (93%) Strand = Plus / Minus Query: 205 tactaccactacaacttctactgctactact 235 |||||| ||||||||| |||||||||||||| Sbjct: 62228 tactactactacaactactactgctactact 62198
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 46.1 bits (23), Expect = 0.088 Identities = 29/31 (93%) Strand = Plus / Plus Query: 282 gaactcgaggcacttgccttccttcttcttc 312 |||||| |||||||||||||| ||||||||| Sbjct: 17669271 gaactccaggcacttgccttctttcttcttc 17669301
>emb|BX005350.6| Zebrafish DNA sequence from clone DKEY-58C8 in linkage group 1, complete sequence Length = 195436 Score = 46.1 bits (23), Expect = 0.088 Identities = 29/31 (93%) Strand = Plus / Minus Query: 205 tactaccactacaacttctactgctactact 235 |||||||||||||||| ||||| |||||||| Sbjct: 117028 tactaccactacaactactactactactact 116998 Score = 46.1 bits (23), Expect = 0.088 Identities = 29/31 (93%) Strand = Plus / Minus Query: 205 tactaccactacaacttctactgctactact 235 |||||||||||||||| ||||| |||||||| Sbjct: 116803 tactaccactacaactactactactactact 116773
>emb|AL954657.14| Zebrafish DNA sequence from clone CH211-223E21 in linkage group 4, complete sequence Length = 200352 Score = 46.1 bits (23), Expect = 0.088 Identities = 29/31 (93%) Strand = Plus / Minus Query: 205 tactaccactacaacttctactgctactact 235 |||||||||||| ||||||||| |||||||| Sbjct: 61548 tactaccactactacttctactactactact 61518
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 46.1 bits (23), Expect = 0.088 Identities = 29/31 (93%) Strand = Plus / Plus Query: 282 gaactcgaggcacttgccttccttcttcttc 312 |||||| |||||||||||||| ||||||||| Sbjct: 17623642 gaactccaggcacttgccttctttcttcttc 17623672
>emb|AL935066.2|CNS08CCI Oryza sativa chromosome 12, . BAC OSJNBa0005P03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 162200 Score = 46.1 bits (23), Expect = 0.088 Identities = 29/31 (93%) Strand = Plus / Plus Query: 282 gaactcgaggcacttgccttccttcttcttc 312 |||||| |||||||||||||| ||||||||| Sbjct: 161607 gaactccaggcacttgccttctttcttcttc 161637
>emb|AL713909.5|CNS07YQ9 Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBa0073H17 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 113494 Score = 46.1 bits (23), Expect = 0.088 Identities = 29/31 (93%) Strand = Plus / Minus Query: 282 gaactcgaggcacttgccttccttcttcttc 312 |||||| |||||||||||||| ||||||||| Sbjct: 112082 gaactccaggcacttgccttctttcttcttc 112052
>gb|AC135018.3| Mus musculus BAC clone RP23-124G8 from 6, complete sequence Length = 192911 Score = 46.1 bits (23), Expect = 0.088 Identities = 29/31 (93%) Strand = Plus / Plus Query: 205 tactaccactacaacttctactgctactact 235 |||||| |||||| ||||||||||||||||| Sbjct: 2798 tactactactacatcttctactgctactact 2828
>ref|XM_637186.1| Dictyostelium discoideum hypothetical protein (DDB0218084), partial mRNA Length = 3669 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 205 tactaccactacaacttctactgctactac 234 |||||||||||| ||| ||||||||||||| Sbjct: 1627 tactaccactaccactactactgctactac 1598
>ref|XM_660666.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.20329) partial mRNA Length = 4941 Score = 44.1 bits (22), Expect = 0.35 Identities = 34/38 (89%) Strand = Plus / Plus Query: 205 tactaccactacaacttctactgctactactgccacca 242 |||||||||||| ||| ||||| |||||||| |||||| Sbjct: 2589 tactaccactactactactactactactactaccacca 2626
>emb|CR533571.9| Zebrafish DNA sequence from clone CH211-209O12 in linkage group 16, complete sequence Length = 218847 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 205 tactaccactacaacttctactgctactac 234 |||||| ||||||||| ||||||||||||| Sbjct: 28498 tactactactacaactactactgctactac 28469
>emb|BX649522.15| Zebrafish DNA sequence from clone DKEY-40I22 in linkage group 2, complete sequence Length = 155396 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 206 actaccactacaacttctactgctactact 235 ||||| ||||||||||||||| |||||||| Sbjct: 121510 actactactacaacttctactactactact 121481
>emb|BX248234.13| Zebrafish DNA sequence from clone DKEY-13E15 in linkage group 16, complete sequence Length = 220538 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Plus Query: 205 tactaccactacaacttctactgctactac 234 |||||| ||||||||| ||||||||||||| Sbjct: 51007 tactactactacaactactactgctactac 51036 Score = 40.1 bits (20), Expect = 5.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 205 tactaccactacaacttctactgctactactgccac 240 |||||| |||||||| ||||| ||||||||||||| Sbjct: 51327 tactactactacaacaactactactactactgccac 51362
>emb|BX322566.6| Zebrafish DNA sequence from clone CH211-209B6 in linkage group 23, complete sequence Length = 203127 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 205 tactaccactacaacttctact 226 |||||||||||||||||||||| Sbjct: 112227 tactaccactacaacttctact 112206
>emb|CR391931.7| Zebrafish DNA sequence from clone DKEY-267P8 in linkage group 23, complete sequence Length = 136484 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 205 tactaccactacaacttctactgctactac 234 |||||| ||||||||||||||| ||||||| Sbjct: 81244 tactactactacaacttctactactactac 81215
>gb|AC166101.4| Mus musculus BAC clone RP23-385P23 from chromosome 6, complete sequence Length = 223116 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 224 actgctactactgccaccatt 244 ||||||||||||||||||||| Sbjct: 207351 actgctactactgccaccatt 207331
>ref|XM_360388.1| Magnaporthe grisea 70-15 hypothetical protein (MG05762.4) partial mRNA Length = 2607 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 205 tactaccactacaacttctactgctactactgc 237 |||||| ||||| ||| |||||||||||||||| Sbjct: 939 tactactactactactactactgctactactgc 971
>gb|AY528739.1| Trypanosoma cruzi chromosome-associated protein G mRNA, complete cds Length = 3243 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 205 tactaccactacaacttctactgctactactgc 237 |||||||||||| ||| ||||| |||||||||| Sbjct: 2070 tactaccactactactactactactactactgc 2102
>gb|AC122399.4| Mus musculus BAC clone RP24-92B2 from chromosome 17, complete sequence Length = 184002 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 205 tactaccactacaacttctactgctactactgc 237 |||||| ||||| ||| |||||||||||||||| Sbjct: 10890 tactactactactactactactgctactactgc 10922
>emb|CR936846.7| Zebrafish DNA sequence from clone DKEY-20N3 in linkage group 1, complete sequence Length = 80060 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 205 tactaccactacaacttctactgctactactgc 237 |||||| ||||| ||| |||||||||||||||| Sbjct: 43503 tactactactactactactactgctactactgc 43535 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 205 tactaccactacaacttctactgctactactgc 237 |||||| ||||| ||| |||||||||||||||| Sbjct: 43086 tactactactactactactactgctactactgc 43118 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 205 tactaccactacaacttctactgctactactgc 237 |||||| ||||| ||| |||||||||||||||| Sbjct: 42792 tactactactactactactactgctactactgc 42824
>emb|BX897684.8| Zebrafish DNA sequence from clone CH211-107A4 in linkage group 7, complete sequence Length = 147920 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 207 ctaccactacaacttctactgctactact 235 |||| ||||||||||||||| |||||||| Sbjct: 54321 ctactactacaacttctactactactact 54349
>gb|AC122429.3| Mus musculus BAC clone RP24-175I3 from chromosome 6, complete sequence Length = 188069 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 224 actgctactactgccaccatt 244 ||||||||||||||||||||| Sbjct: 30909 actgctactactgccaccatt 30889
>ref|XM_803756.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506697.60) partial mRNA Length = 3243 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 205 tactaccactacaacttctactgctactactgc 237 |||||||||||| ||| ||||| |||||||||| Sbjct: 2070 tactaccactactactactactactactactgc 2102
>emb|BX088589.14| Zebrafish DNA sequence from clone DKEY-27E7 in linkage group 12, complete sequence Length = 242558 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 205 tactaccactacaacttctactgctacta 233 |||||||||||| ||||||||| |||||| Sbjct: 234493 tactaccactactacttctacttctacta 234521
>emb|BX901914.13| Zebrafish DNA sequence from clone DKEY-27F18 in linkage group 4, complete sequence Length = 149383 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 205 tactaccactacaacttctactgctacta 233 |||||| ||||||||| |||||||||||| Sbjct: 81577 tactactactacaactactactgctacta 81549
>ref|XM_726040.1| Plasmodium yoelii yoelii str. 17XNL splicing factor (PY03158) partial mRNA Length = 1506 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 207 ctaccactacaacttctactgctactact 235 |||||||||| |||||||||||| ||||| Sbjct: 992 ctaccactactacttctactgcttctact 964
>emb|BX004862.9| Zebrafish DNA sequence from clone DKEY-200M9 in linkage group 4 Contains the gene for a novel protein similar to vertebrate TAFA protein 5 (TAFA5) and a CpG island, complete sequence Length = 174359 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 205 tactaccactacaacttctactgctacta 233 |||||| ||||||||| |||||||||||| Sbjct: 26464 tactactactacaactactactgctacta 26492
>gb|AC165428.1| Strongylocentrotus purpuratus BAC clone contig containing Eve, the hox cluster, cholinesterase, and COLP5alpha genes, complete sequence Length = 796348 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 205 tactaccactacaacttctactgctactactgc 237 |||||| ||||| ||| |||||||||||||||| Sbjct: 95560 tactactactactactactactgctactactgc 95592 Score = 40.1 bits (20), Expect = 5.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 205 tactaccactacaacttctactgctactactgccac 240 |||||||||||| || ||||| ||||||||||||| Sbjct: 541952 tactaccactactaccactactactactactgccac 541917 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 211 cactacaacttctactgctactactgccacca 242 |||||| ||| ||||| ||||||||||||||| Sbjct: 95144 cactactactactactactactactgccacca 95175
>emb|CR392365.8| Zebrafish DNA sequence from clone DKEY-171P17 in linkage group 5, complete sequence Length = 168716 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 203 cgtactaccactacaacttctactgctactact 235 |||||||||||||| ||| ||||| |||||||| Sbjct: 116862 cgtactaccactactactactactactactact 116894
>gb|AC127460.2| Homo sapiens chromosome 5 clone RP11-689B23, complete sequence Length = 115293 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 205 tactaccactacaacttctactgctacta 233 |||||||||||| ||| |||||||||||| Sbjct: 60307 tactaccactaccactactactgctacta 60279
>gb|AC113390.3| Homo sapiens chromosome 5 clone RP11-360C3, complete sequence Length = 196545 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 205 tactaccactacaacttctactgctacta 233 |||||||||||| ||| |||||||||||| Sbjct: 179677 tactaccactaccactactactgctacta 179705
>emb|AL606494.4| Mouse DNA sequence from clone RP23-198B6 on chromosome 2, complete sequence Length = 196744 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 222 ctactgctactactgccacca 242 ||||||||||||||||||||| Sbjct: 54716 ctactgctactactgccacca 54696
>emb|BX649457.15| Zebrafish DNA sequence from clone DKEYP-87E7 in linkage group 22, complete sequence Length = 159207 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 205 tactaccactacaacttctactgctacta 233 |||||| ||||||||| |||||||||||| Sbjct: 29422 tactactactacaactactactgctacta 29394
>emb|BX649545.14| Zebrafish DNA sequence from clone CH211-9N13 in linkage group 19, complete sequence Length = 169802 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 207 ctaccactacaacttctactgctactact 235 |||| ||||||||| |||||||||||||| Sbjct: 38205 ctactactacaactactactgctactact 38177
>emb|BX890573.6| Zebrafish DNA sequence from clone DKEYP-90F5 in linkage group 20, complete sequence Length = 86820 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 205 tactaccactacaacttctactgctacta 233 |||||| ||||||||||||||| |||||| Sbjct: 74311 tactactactacaacttctacttctacta 74283
>gb|AC151411.2| Mus musculus BAC clone RP24-363M23 from 17, complete sequence Length = 173264 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 205 tactaccactacaacttctactgctactactgc 237 |||||| ||||| ||| |||||||||||||||| Sbjct: 170866 tactactactactactactactgctactactgc 170898
>gb|DQ079274.1| Drosophila mojavensis strain 15081-1351.03 Acp27a (Acp27a) gene, complete cds Length = 355 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 205 tactaccactacaacttctactgctactactgc 237 |||||||||||| ||| ||||| |||||||||| Sbjct: 124 tactaccactactactactactactactactgc 156
>ref|XM_642722.1| Dictyostelium discoideum armadillo repeat-containing protein (DDB0230124), partial mRNA Length = 5811 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 205 tactaccactacaacttctactgctact 232 |||||||||||| ||| ||||||||||| Sbjct: 3826 tactaccactaccactgctactgctact 3799
>ref|XM_637453.1| Dictyostelium discoideum hypothetical protein (DDB0217996), partial mRNA Length = 2001 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 212 actacaacttctactgctactact 235 ||||||||||||||| |||||||| Sbjct: 486 actacaacttctactactactact 463
>gb|AC169504.1| Mus musculus BAC clone RP23-416K3 from chromosome 17, complete sequence Length = 215554 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 204 gtactaccactacaacttctactgctactact 235 ||||||| ||||| ||| |||||||||||||| Sbjct: 28788 gtactactactactactgctactgctactact 28819
>ref|NM_193725.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 960 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 206 actaccactacaacttctactgctactactgc 237 ||||||||| | ||||| |||||||||||||| Sbjct: 888 actaccactcccacttccactgctactactgc 857
>gb|AC148451.2| Xenopus tropicalis clone CH216-143G2, complete sequence Length = 151696 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 acttctactgctactactgc 237 |||||||||||||||||||| Sbjct: 97711 acttctactgctactactgc 97692
>gb|AY022494.1| Oryza sativa microsatellite MRG4819 containing (AGT)X12, closest to marker R518, genomic sequence Length = 236 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 205 tactaccactacaacttctactgctactactg 236 |||||| ||||| ||| ||||||||||||||| Sbjct: 122 tactactactactactactactgctactactg 91
>gb|AC144709.2| Danio rerio clone CH211-204P11, complete sequence Length = 157229 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 205 tactaccactacaacttctactgctactactg 236 |||||||||||| ||| ||||| ||||||||| Sbjct: 5143 tactaccactactactactactactactactg 5174
>gb|DQ481664.1| Takifugu rubripes HoxAb gene cluster, complete sequence Length = 163052 Score = 40.1 bits (20), Expect = 5.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 205 tactaccactacaacttctactgctactactgccac 240 |||||||||||| ||| ||||| |||||||| |||| Sbjct: 57442 tactaccactactactactactactactactaccac 57407
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 205 tactaccactacaacttctactgctactactg 236 |||||| ||||| ||| ||||||||||||||| Sbjct: 4268175 tactactactactactactactgctactactg 4268206
>gb|AC115579.3| Dictyostelium discoideum chromosome 2 map 6097680-6105897 strain AX4, complete sequence Length = 8211 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 212 actacaacttctactgctactact 235 ||||||||||||||| |||||||| Sbjct: 2494 actacaacttctactactactact 2471
>gb|AC161448.4| Mus musculus BAC clone RP24-149K9 from chromosome 6, complete sequence Length = 190414 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 204 gtactaccactacaacttctactgctactact 235 ||||||| ||||| ||| |||||||||||||| Sbjct: 152086 gtactactactactactactactgctactact 152117
>emb|Z75747.2|HSU96H1 Human DNA sequence from clone LL0XNC01-96H1 on chromosome X, complete sequence Length = 39055 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 222 ctactgctactactgccaccatta 245 |||||||||||||| ||||||||| Sbjct: 9431 ctactgctactactaccaccatta 9454
>emb|AL928717.5| Human DNA sequence from clone RP11-363G10 on chromosome X Contains the gene for family D 4 melanoma antigen (MAGED4) (KIAA1859, DKFZp761N1924, FLJ37222, FLJ25964), gene LOC349420 (FLJ39060) and a CpG island, complete sequence Length = 186278 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 205 tactaccactacaacttctactgctactactg 236 |||||| ||||| ||| ||||||||||||||| Sbjct: 134749 tactactactactactactactgctactactg 134718
>emb|BX538353.1| Cryptosporidium parvum chromosome 6, complete sequence; segment 4/4 Length = 277703 Score = 40.1 bits (20), Expect = 5.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 205 tactaccactacaacttctactgctactactgccac 240 |||||||||||| ||| ||||| |||||||| |||| Sbjct: 250458 tactaccactactactactactactactactaccac 250423
>emb|BX511087.12| Zebrafish DNA sequence from clone DKEY-261O7 in linkage group 17, complete sequence Length = 184012 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 206 actaccactacaacttctactgctactactgc 237 ||||| || |||||| |||||||||||||||| Sbjct: 42389 actactacaacaactactactgctactactgc 42358
>emb|BX897736.7| Zebrafish DNA sequence from clone CH211-181B15 in linkage group 17, complete sequence Length = 141987 Score = 40.1 bits (20), Expect = 5.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 205 tactaccactacaacttctactgctactactgccac 240 |||||||||||||||| ||||| |||| ||| |||| Sbjct: 65016 tactaccactacaactactacttctaccactaccac 64981
>gb|AC087336.5| Mus musculus chromosome 6, clone RP23-446O7, complete sequence Length = 181773 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 204 gtactaccactacaacttctactgctactact 235 ||||||| ||||| ||| |||||||||||||| Sbjct: 30652 gtactactactactactactactgctactact 30683
>emb|BX323831.7| Zebrafish DNA sequence from clone CH211-12E7 in linkage group 23, complete sequence Length = 180638 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 212 actacaacttctactgctactact 235 ||||| |||||||||||||||||| Sbjct: 109004 actactacttctactgctactact 109027
>ref|XM_627858.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd6_5400), partial mRNA Length = 2004 Score = 40.1 bits (20), Expect = 5.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 205 tactaccactacaacttctactgctactactgccac 240 |||||||||||| ||| ||||| |||||||| |||| Sbjct: 1665 tactaccactactactactactactactactaccac 1700
>ref|XM_626655.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd3_720), partial mRNA Length = 35091 Score = 40.1 bits (20), Expect = 5.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 205 tactaccactacaacttctactgctactactgccac 240 |||||||||||| ||| ||||| |||||||| |||| Sbjct: 12414 tactaccactactactactactactactactaccac 12449
>emb|BX572622.13| Zebrafish DNA sequence from clone CH211-150O20 in linkage group 19, complete sequence Length = 188940 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 205 tactaccactacaacttctactgctactactg 236 |||||||||||| ||| ||||| ||||||||| Sbjct: 119546 tactaccactactactactactactactactg 119515
>dbj|AK053474.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130020H04 product:unclassifiable, full insert sequence Length = 3401 Score = 40.1 bits (20), Expect = 5.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 205 tactaccactacaacttctactgctactactgccac 240 |||||| ||||| ||| ||||| ||||||||||||| Sbjct: 2980 tactactactactactactactactactactgccac 3015
>gb|AF225480.1|AF225480 Eustenogaster fraterna clone EF131CAT microsatellite sequence Length = 140 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 acttctactgctactactgc 237 |||||||||||||||||||| Sbjct: 46 acttctactgctactactgc 65
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 205 tactaccactacaacttctactgctactactg 236 |||||| ||||| ||| ||||||||||||||| Sbjct: 4268290 tactactactactactactactgctactactg 4268321
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 206 actaccactacaacttctactgctactactgc 237 ||||||||| | ||||| |||||||||||||| Sbjct: 17709068 actaccactcccacttccactgctactactgc 17709037
>emb|BX511264.7| Zebrafish DNA sequence from clone DKEY-31O6 in linkage group 21, complete sequence Length = 145605 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 215 acaacttctactgctactactgccacca 242 ||||| ||||||||||||||| |||||| Sbjct: 81205 acaacatctactgctactactaccacca 81178
>gb|AC092155.3| Homo sapiens BAC clone RP11-312H10 from 2, complete sequence Length = 153304 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 acttctactgctactactgc 237 |||||||||||||||||||| Sbjct: 127536 acttctactgctactactgc 127555
>gb|AC112482.4| Homo sapiens 3 BAC RP11-305F5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 182916 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 actgctactactgccaccat 243 |||||||||||||||||||| Sbjct: 88334 actgctactactgccaccat 88353
>gb|AC104763.12| Homo sapiens chromosome 17, clone RP11-3K24, complete sequence Length = 163418 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 222 ctactgctactactgccaccatta 245 |||||||||||||| ||||||||| Sbjct: 69516 ctactgctactactaccaccatta 69539
>dbj|AP003217.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0094H06 Length = 147245 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 206 actaccactacaacttctactgctactactgc 237 ||||||||| | ||||| |||||||||||||| Sbjct: 90603 actaccactcccacttccactgctactactgc 90572
>emb|AL672015.7| Mouse DNA sequence from clone RP23-154O12 on chromosome X, complete sequence Length = 194287 Score = 40.1 bits (20), Expect = 5.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 205 tactaccactacaacttctactgctactactgccac 240 |||||| ||||| ||| ||||| ||||||||||||| Sbjct: 108535 tactactactactactactactactactactgccac 108570
>dbj|AK102891.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033112M22, full insert sequence Length = 1392 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 206 actaccactacaacttctactgctactactgc 237 ||||||||| | ||||| |||||||||||||| Sbjct: 974 actaccactcccacttccactgctactactgc 943
>dbj|AK059119.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-E12, full insert sequence Length = 1367 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 206 actaccactacaacttctactgctactactgc 237 ||||||||| | ||||| |||||||||||||| Sbjct: 974 actaccactcccacttccactgctactactgc 943
>gb|AY107374.1| Zea mays PCO088426 mRNA sequence Length = 436 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 282 gaactcgaggcacttgccttccttcttc 309 |||||| |||||||||||||| |||||| Sbjct: 285 gaactccaggcacttgccttctttcttc 312
>gb|U31017.1|HSU31017 Hordeum spontaneum CHC 21051 5S rRNA genes, clone HSPO005, partial sequence Length = 292 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 204 gtactaccactacaacttctactgctactact 235 ||||||||||||| ||| ||||| |||||||| Sbjct: 221 gtactaccactactactactactactactact 190
>gb|AC126223.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0076N15, complete sequence Length = 134307 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 205 tactaccactacaacttctactgctactactg 236 |||||| ||||| ||| ||||||||||||||| Sbjct: 96790 tactactactactactactactgctactactg 96821
>gb|U26721.1|DVU26721 Drosophila virilis sodium channel protein (para) gene, exons 5,6,7, and 8, partial cds Length = 1890 Score = 40.1 bits (20), Expect = 5.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 205 tactaccactacaacttctactgctactactgccac 240 |||||| ||||| ||| |||||||||||||| |||| Sbjct: 333 tactactactactactactactgctactactaccac 368
>emb|AL731678.17| Mouse DNA sequence from clone RP23-39H12 on chromosome X, complete sequence Length = 230186 Score = 40.1 bits (20), Expect = 5.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 205 tactaccactacaacttctactgctactactgccac 240 |||||| ||||| ||| ||||| ||||||||||||| Sbjct: 133183 tactactactactactactactactactactgccac 133218 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,903,744 Number of Sequences: 3902068 Number of extensions: 2903744 Number of successful extensions: 66983 Number of sequences better than 10.0: 83 Number of HSP's better than 10.0 without gapping: 83 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66575 Number of HSP's gapped (non-prelim): 407 length of query: 404 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 382 effective length of database: 17,147,199,772 effective search space: 6550230312904 effective search space used: 6550230312904 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
