ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl31g04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZNHI2_HUMAN (Q9UHR6) Zinc finger HIT domain-containing protein 2... 30 2.0
2ZNHI2_MOUSE (Q9QY66) Zinc finger HIT domain-containing protein 2... 29 2.6
3YFC3_SCHPO (O14138) Hypothetical protein C25A8.03c in chromosome I 28 5.8
4MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia p... 27 9.9
5PXDC2_XENLA (Q6DE92) Plexin domain-containing protein 2 precursor 27 9.9
6MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia p... 27 9.9
7ATP6_AEDAL (Q5JCK5) ATP synthase a chain (EC 3.6.3.14) (ATPase p... 27 9.9

>ZNHI2_HUMAN (Q9UHR6) Zinc finger HIT domain-containing protein 2 (Protein FON)|
          Length = 403

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -1

Query: 257 VPLFFEAMESLIK*-VTGNLRMDIPSKLFSYEHTAVLFHG 141
           VP    A+ SL +  V+  +R  +P+ LF+Y HT  L+HG
Sbjct: 192 VPTRIPAIVSLSRGPVSPLVRFQLPNVLFAYAHTLALYHG 231



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>ZNHI2_MOUSE (Q9QY66) Zinc finger HIT domain-containing protein 2 (Protein FON)|
          Length = 399

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 203 LRMDIPSKLFSYEHTAVLFHG 141
           +R  +P+ LF+Y HT  L+HG
Sbjct: 206 VRFQLPNVLFAYAHTLALYHG 226



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>YFC3_SCHPO (O14138) Hypothetical protein C25A8.03c in chromosome I|
          Length = 467

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = -2

Query: 160 QLCCFMEVSVNCIVLLLCYFYFTVFKLLVSWFQNFLGILILDIL 29
           Q   F E   N +VL     YF VF L +  F +  GI+ LDIL
Sbjct: 126 QRSLFSESISNYLVLQYKLRYFPVFDLKIYDFHSGTGIIALDIL 169



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>MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog|
            (Histone-lysine N-methyltransferase, H3 lysine-4 specific
            MLL3) (EC 2.1.1.43) (Homologous to ALR protein)
          Length = 4911

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 312  CRWCSWCKVCSEDS 271
            C+WC WC+ C   S
Sbjct: 1051 CKWCVWCRHCGATS 1064



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>PXDC2_XENLA (Q6DE92) Plexin domain-containing protein 2 precursor|
          Length = 513

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 19/51 (37%)
 Frame = -3

Query: 303 CSWCKV-------------------CSEDSQQGVCASIL*SYGVSYQVSDG 208
           CSWC +                   C+E+S+  VC  +L + G+S+  + G
Sbjct: 331 CSWCNIPQRCSSGFDRHRQDWVENGCTEESKDTVCDDLLQTTGISHHTTTG 381



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>MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog|
            (Histone-lysine N-methyltransferase, H3 lysine-4 specific
            MLL3) (EC 2.1.1.43)
          Length = 4903

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 312  CRWCSWCKVCSEDS 271
            C+WC WC+ C   S
Sbjct: 1044 CKWCVWCRHCGATS 1057



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>ATP6_AEDAL (Q5JCK5) ATP synthase a chain (EC 3.6.3.14) (ATPase protein 6)|
          Length = 226

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -2

Query: 94 TVFKLLVSWFQNFLGILIL 38
          T+F + ++WF  F+G+LI+
Sbjct: 14 TIFNMSLNWFSTFIGLLII 32


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,374,179
Number of Sequences: 219361
Number of extensions: 717818
Number of successful extensions: 1882
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1881
length of database: 80,573,946
effective HSP length: 82
effective length of database: 62,586,344
effective search space used: 1502072256
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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