ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl31f12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y063_SYNY3 (Q55147) Hypothetical UPF0118 protein sll0063 30 1.3
2IBP3_MOUSE (P47878) Insulin-like growth factor-binding protein 3... 28 8.4
3IBP3_HUMAN (P17936) Insulin-like growth factor-binding protein 3... 28 8.4
4IBP3_BOVIN (P20959) Insulin-like growth factor-binding protein 3... 28 8.4
5IBP3_RAT (P15473) Insulin-like growth factor-binding protein 3 p... 28 8.4
6IBP3_PIG (P16611) Insulin-like growth factor-binding protein 3 p... 28 8.4

>Y063_SYNY3 (Q55147) Hypothetical UPF0118 protein sll0063|
          Length = 395

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -3

Query: 210 LSPSPLHHEETLVAQLRYWASILKRVIVELDVKVYILGWSI 88
           L P  L   + LVA+L  W    ++ +V LD K  ILGW +
Sbjct: 107 LIPLALSQAQQLVARLPDWLDSGQKQLVLLDQKAEILGWPV 147



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>IBP3_MOUSE (P47878) Insulin-like growth factor-binding protein 3 precursor|
           (IGFBP-3) (IBP-3) (IGF-binding protein 3)
          Length = 291

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 39  NCTPTSFYPKEHCRPSK 89
           NC    FY K+ CRPSK
Sbjct: 239 NCDKKGFYKKKRCRPSK 255



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>IBP3_HUMAN (P17936) Insulin-like growth factor-binding protein 3 precursor|
           (IGFBP-3) (IBP-3) (IGF-binding protein 3)
          Length = 291

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 39  NCTPTSFYPKEHCRPSK 89
           NC    FY K+ CRPSK
Sbjct: 239 NCDKKGFYKKKQCRPSK 255



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>IBP3_BOVIN (P20959) Insulin-like growth factor-binding protein 3 precursor|
           (IGFBP-3) (IBP-3) (IGF-binding protein 3)
          Length = 291

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 39  NCTPTSFYPKEHCRPSK 89
           NC    FY K+ CRPSK
Sbjct: 239 NCDKKGFYKKKQCRPSK 255



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>IBP3_RAT (P15473) Insulin-like growth factor-binding protein 3 precursor|
           (IGFBP-3) (IBP-3) (IGF-binding protein 3)
          Length = 292

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 39  NCTPTSFYPKEHCRPSK 89
           NC    FY K+ CRPSK
Sbjct: 240 NCDKKGFYKKKQCRPSK 256



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>IBP3_PIG (P16611) Insulin-like growth factor-binding protein 3 precursor|
           (IGFBP-3) (IBP-3) (IGF-binding protein 3)
          Length = 293

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 39  NCTPTSFYPKEHCRPSK 89
           NC    FY K+ CRPSK
Sbjct: 241 NCDKKGFYKKKQCRPSK 257


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,837,458
Number of Sequences: 219361
Number of extensions: 572770
Number of successful extensions: 1364
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1364
length of database: 80,573,946
effective HSP length: 49
effective length of database: 69,825,257
effective search space used: 1675806168
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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