ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl31f08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|BX842650.1| Bdellovibrio bacteriovorus complete genome, stra... 42 0.11
2gb|AF039716.1| Caenorhabditis elegans cosmid W03G9, complete seq... 42 0.11
3gb|AF232219.1| Treponema denticola putative alcohol dehydrogenas... 40 0.42
4gb|AE017226.1| Treponema denticola ATCC 35405, complete genome 40 0.42
5gb|AC123713.13| Mus musculus chromosome 7, clone RP23-391D20, co... 38 1.7
6gb|AC160540.7| Mus musculus chromosome 7, clone RP23-44O19, comp... 38 1.7
7emb|AL596171.1| Listeria innocua Clip11262 complete genome, segm... 38 1.7
8ref|NM_061143.3| Caenorhabditis elegans Y105E8B.3 (Y105E8B.3) mR... 38 1.7
9emb|AL132877.3|CEY105E8B Caenorhabditis elegans YAC Y105E8B, com... 38 1.7
10dbj|AP006429.1| Lotus japonicus genomic DNA, chromosome 1, clone... 38 1.7
11ref|NM_114220.2| Arabidopsis thaliana unknown protein AT3G43520 ... 36 6.6
12gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, ... 36 6.6
13gb|BC065111.1| Mus musculus RIKEN cDNA 4931407K02 gene, mRNA (cD... 36 6.6
14ref|NM_025675.2| Mus musculus ATP binding domain 4 (Atpbd4), mRNA 36 6.6
15gb|AE017244.1| Mycoplasma hyopneumoniae 7448, complete genome 36 6.6
16gb|AE017243.1| Mycoplasma hyopneumoniae J, complete genome 36 6.6
17gb|AC174360.8| Medicago truncatula clone mth2-31a5, complete seq... 36 6.6
18gb|AC073939.6| Mus musculus strain C57BL/6J chromosome 12 clone ... 36 6.6
19gb|AC108941.4| Homo sapiens BAC clone RP11-736K12 from 4, comple... 36 6.6
20gb|AC091824.3| Homo sapiens chromosome 5 clone CTC-455O22, compl... 36 6.6
21dbj|AK145789.1| Mus musculus blastocyst blastocyst cDNA, RIKEN f... 36 6.6
22ref|NM_029946.3| Mus musculus RIKEN cDNA 4931407K02 gene (493140... 36 6.6
23dbj|AK088160.1| Mus musculus 2 days neonate thymus thymic cells ... 36 6.6
24gb|AC087166.3|AC087166 Mus musculus strain C57BL/6J chromosome 1... 36 6.6
25dbj|AK017595.1| Mus musculus 8 days embryo whole body cDNA, RIKE... 36 6.6
26gb|AC074329.2|AC074329 Mus musculus strain C57BL/6J chromosome 1... 36 6.6
27gb|CP000026.1| Salmonella enterica subsp. enterica serovar Parat... 36 6.6
28emb|AL138644.1|ATT18D12 Arabidopsis thaliana DNA chromosome 3, B... 36 6.6
29emb|CT573071.1| Kuenenia stuttgartiensis genome fragment KUST_E ... 36 6.6
30tpe|BN000872.1| TPA: TPA_exp: Mus musculus immunoglobulin heavy ... 36 6.6
31gb|BC087148.1| Rattus norvegicus similar to RIKEN cDNA 5730421E1... 36 6.6
32gb|AE017332.1| Mycoplasma hyopneumoniae 232, complete genome 36 6.6
33gb|AC163348.5| Mus musculus BAC clone RP23-230L2 from chromosome... 36 6.6
34ref|NM_001014181.1| Rattus norvegicus similar to RIKEN cDNA 5730... 36 6.6
35gb|AC164609.4| Mus musculus BAC clone RP24-350F17 from chromosom... 36 6.6
36gb|BC022995.1| Mus musculus ATP binding domain 4, mRNA (cDNA clo... 36 6.6
37dbj|AP006737.1| Lotus japonicus genomic DNA, chromosome 1, clone... 36 6.6
38dbj|AP006736.1| Lotus japonicus genomic DNA, chromosome 1, clone... 36 6.6
39emb|AL513354.14| Mouse DNA sequence from clone RP23-150J22 on ch... 36 6.6
40emb|AL732404.7| Mouse DNA sequence from clone RP23-177D21 on chr... 36 6.6 
>emb|BX842650.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 5/11
          Length = 349723

 Score = 42.1 bits (21), Expect = 0.11
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 6      cttccagttgattttcgggaa 26
              |||||||||||||||||||||
Sbjct: 215992 cttccagttgattttcgggaa 215972
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>gb|AF039716.1| Caenorhabditis elegans cosmid W03G9, complete sequence
          Length = 36571

 Score = 42.1 bits (21), Expect = 0.11
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 10    cagttgattttcgggaataat 30
             |||||||||||||||||||||
Sbjct: 20076 cagttgattttcgggaataat 20056
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>gb|AF232219.1| Treponema denticola putative alcohol dehydrogenase, FliQ (fliQ), FliR
            (fliR), and FlhB (flhB) genes, complete cds; and FlhA
            (flhA) gene, partial cds
          Length = 4262

 Score = 40.1 bits (20), Expect = 0.42
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 19   ttcgggaataattttatgtt 38
            ||||||||||||||||||||
Sbjct: 1454 ttcgggaataattttatgtt 1435
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>gb|AE017226.1| Treponema denticola ATCC 35405, complete genome
          Length = 2843201

 Score = 40.1 bits (20), Expect = 0.42
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    ttcgggaataattttatgtt 38
             ||||||||||||||||||||
Sbjct: 61230 ttcgggaataattttatgtt 61211
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>gb|AC123713.13| Mus musculus chromosome 7, clone RP23-391D20, complete sequence
          Length = 183590

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 13    ttgattttcgggaataatt 31
             |||||||||||||||||||
Sbjct: 38191 ttgattttcgggaataatt 38209
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>gb|AC160540.7| Mus musculus chromosome 7, clone RP23-44O19, complete sequence
          Length = 221807

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 13    ttgattttcgggaataatt 31
             |||||||||||||||||||
Sbjct: 85673 ttgattttcgggaataatt 85655
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>emb|AL596171.1| Listeria innocua Clip11262 complete genome, segment 9/12
          Length = 258650

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 17     ttttcgggaataattttat 35
              |||||||||||||||||||
Sbjct: 129926 ttttcgggaataattttat 129908
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>ref|NM_061143.3| Caenorhabditis elegans Y105E8B.3 (Y105E8B.3) mRNA, complete cds
          Length = 1796

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 1    cacggcttccagttgattt 19
            |||||||||||||||||||
Sbjct: 1207 cacggcttccagttgattt 1189
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>emb|AL132877.3|CEY105E8B Caenorhabditis elegans YAC Y105E8B, complete sequence
          Length = 79271

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 1     cacggcttccagttgattt 19
             |||||||||||||||||||
Sbjct: 43460 cacggcttccagttgattt 43442
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>dbj|AP006429.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT17D07, TM0322,
             complete sequence
          Length = 109570

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 23    ggaataattttatgttcac 41
             |||||||||||||||||||
Sbjct: 84423 ggaataattttatgttcac 84405
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>ref|NM_114220.2| Arabidopsis thaliana unknown protein AT3G43520 mRNA, complete cds
          Length = 996

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 15  gattttcgggaataattt 32
           ||||||||||||||||||
Sbjct: 995 gattttcgggaataattt 978
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>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 12      gttgattttcgggaataa 29
               ||||||||||||||||||
Sbjct: 2877072 gttgattttcgggaataa 2877055
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>gb|BC065111.1| Mus musculus RIKEN cDNA 4931407K02 gene, mRNA (cDNA clone MGC:86101
            IMAGE:30536704), complete cds
          Length = 5031

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 5    gcttccagttgattttcg 22
            ||||||||||||||||||
Sbjct: 1265 gcttccagttgattttcg 1248
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>ref|NM_025675.2| Mus musculus ATP binding domain 4 (Atpbd4), mRNA
          Length = 2751

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 24   gaataattttatgttcac 41
            ||||||||||||||||||
Sbjct: 2006 gaataattttatgttcac 2023
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>gb|AE017244.1| Mycoplasma hyopneumoniae 7448, complete genome
          Length = 920079

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 13     ttgattttcgggaataat 30
              ||||||||||||||||||
Sbjct: 168740 ttgattttcgggaataat 168757
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>gb|AE017243.1| Mycoplasma hyopneumoniae J, complete genome
          Length = 897405

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 13     ttgattttcgggaataat 30
              ||||||||||||||||||
Sbjct: 161450 ttgattttcgggaataat 161467
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>gb|AC174360.8| Medicago truncatula clone mth2-31a5, complete sequence
          Length = 99153

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 17    ttttcgggaataatttta 34
             ||||||||||||||||||
Sbjct: 29213 ttttcgggaataatttta 29230
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>gb|AC073939.6| Mus musculus strain C57BL/6J chromosome 12 clone RP23-218B2, complete
              sequence
          Length = 195281

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 23     ggaataattttatgttca 40
              ||||||||||||||||||
Sbjct: 156615 ggaataattttatgttca 156598



 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 23     ggaataattttatgttca 40
              ||||||||||||||||||
Sbjct: 109230 ggaataattttatgttca 109213
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>gb|AC108941.4| Homo sapiens BAC clone RP11-736K12 from 4, complete sequence
          Length = 179273

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 22    gggaataattttatgttc 39
             ||||||||||||||||||
Sbjct: 56669 gggaataattttatgttc 56686
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>gb|AC091824.3| Homo sapiens chromosome 5 clone CTC-455O22, complete sequence
          Length = 171962

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 23    ggaataattttatgttca 40
             ||||||||||||||||||
Sbjct: 79346 ggaataattttatgttca 79329
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>dbj|AK145789.1| Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched
            library, clone:I1C0044A04 product:hypothetical protein,
            full insert sequence
          Length = 2477

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 24   gaataattttatgttcac 41
            ||||||||||||||||||
Sbjct: 1938 gaataattttatgttcac 1955
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>ref|NM_029946.3| Mus musculus RIKEN cDNA 4931407K02 gene (4931407K02Rik), mRNA
          Length = 5031

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 5    gcttccagttgattttcg 22
            ||||||||||||||||||
Sbjct: 1265 gcttccagttgattttcg 1248
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>dbj|AK088160.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
            full-length enriched library, clone:E430005D16
            product:hypothetical Domain of unknown function DUF71
            containing protein, full insert sequence
          Length = 2751

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 24   gaataattttatgttcac 41
            ||||||||||||||||||
Sbjct: 2006 gaataattttatgttcac 2023
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>gb|AC087166.3|AC087166 Mus musculus strain C57BL/6J chromosome 12 clone RP23-354D10, complete
              sequence
          Length = 210476

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 23     ggaataattttatgttca 40
              ||||||||||||||||||
Sbjct: 176653 ggaataattttatgttca 176636
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>dbj|AK017595.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length
            enriched library, clone:5730421E18 product:hypothetical
            Domain of unknown function DUF71 containing protein, full
            insert sequence
          Length = 2655

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 24   gaataattttatgttcac 41
            ||||||||||||||||||
Sbjct: 1891 gaataattttatgttcac 1908
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>gb|AC074329.2|AC074329 Mus musculus strain C57BL/6J chromosome 12 clone RP23-257D2, complete
              sequence
          Length = 207872

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 23     ggaataattttatgttca 40
              ||||||||||||||||||
Sbjct: 172689 ggaataattttatgttca 172706



 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 23     ggaataattttatgttca 40
              ||||||||||||||||||
Sbjct: 123036 ggaataattttatgttca 123053
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>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
          Length = 4585229

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 13     ttgattttcgggaataat 30
              ||||||||||||||||||
Sbjct: 395512 ttgattttcgggaataat 395495
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>emb|AL138644.1|ATT18D12 Arabidopsis thaliana DNA chromosome 3, BAC clone T18D12
          Length = 100678

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 15    gattttcgggaataattt 32
             ||||||||||||||||||
Sbjct: 47679 gattttcgggaataattt 47662
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>emb|CT573071.1| Kuenenia stuttgartiensis genome fragment KUST_E (5 of 5)
          Length = 2199546

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 18     tttcgggaataattttat 35
              ||||||||||||||||||
Sbjct: 801434 tttcgggaataattttat 801417
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>tpe|BN000872.1| TPA: TPA_exp: Mus musculus immunoglobulin heavy chain variable region
              locus, strain C57BL/6
          Length = 2500000

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 23     ggaataattttatgttca 40
              ||||||||||||||||||
Sbjct: 915551 ggaataattttatgttca 915534



 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 23     ggaataattttatgttca 40
              ||||||||||||||||||
Sbjct: 865898 ggaataattttatgttca 865881



 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 23     ggaataattttatgttca 40
              ||||||||||||||||||
Sbjct: 566442 ggaataattttatgttca 566425



 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 23     ggaataattttatgttca 40
              ||||||||||||||||||
Sbjct: 519053 ggaataattttatgttca 519036
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>gb|BC087148.1| Rattus norvegicus similar to RIKEN cDNA 5730421E18, mRNA (cDNA clone
            MGC:95176 IMAGE:7131040), complete cds
          Length = 2512

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 24   gaataattttatgttcac 41
            ||||||||||||||||||
Sbjct: 1890 gaataattttatgttcac 1907
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>gb|AE017332.1| Mycoplasma hyopneumoniae 232, complete genome
          Length = 892758

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 13     ttgattttcgggaataat 30
              ||||||||||||||||||
Sbjct: 280578 ttgattttcgggaataat 280561
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>gb|AC163348.5| Mus musculus BAC clone RP23-230L2 from chromosome 12, complete sequence
          Length = 233932

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 23     ggaataattttatgttca 40
              ||||||||||||||||||
Sbjct: 221061 ggaataattttatgttca 221044
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>ref|NM_001014181.1| Rattus norvegicus similar to RIKEN cDNA 5730421E18 (RGD1310006), mRNA
          Length = 2512

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 24   gaataattttatgttcac 41
            ||||||||||||||||||
Sbjct: 1890 gaataattttatgttcac 1907
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>gb|AC164609.4| Mus musculus BAC clone RP24-350F17 from chromosome 12, complete
             sequence
          Length = 198167

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 23    ggaataattttatgttca 40
             ||||||||||||||||||
Sbjct: 20261 ggaataattttatgttca 20244
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>gb|BC022995.1| Mus musculus ATP binding domain 4, mRNA (cDNA clone MGC:35721
            IMAGE:5363234), complete cds
          Length = 2693

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 24   gaataattttatgttcac 41
            ||||||||||||||||||
Sbjct: 1865 gaataattttatgttcac 1882
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>dbj|AP006737.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT20F11, TM1687,
             complete sequence
          Length = 91649

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 21    cgggaataattttatgtt 38
             ||||||||||||||||||
Sbjct: 11297 cgggaataattttatgtt 11280
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>dbj|AP006736.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT45I15, TM1494,
             complete sequence
          Length = 114162

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 21    cgggaataattttatgtt 38
             ||||||||||||||||||
Sbjct: 76299 cgggaataattttatgtt 76282
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>emb|AL513354.14| Mouse DNA sequence from clone RP23-150J22 on chromosome 15, complete
              sequence
          Length = 227073

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 5      gcttccagttgattttcg 22
              ||||||||||||||||||
Sbjct: 166338 gcttccagttgattttcg 166355
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>emb|AL732404.7| Mouse DNA sequence from clone RP23-177D21 on chromosome 2, complete
            sequence
          Length = 220275

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 24   gaataattttatgttcac 41
            ||||||||||||||||||
Sbjct: 6970 gaataattttatgttcac 6953


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 513,994
Number of Sequences: 3902068
Number of extensions: 513994
Number of successful extensions: 137636
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 137281
Number of HSP's gapped (non-prelim): 355
length of query: 50
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 30
effective length of database: 17,155,003,908
effective search space: 514650117240
effective search space used: 514650117240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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