ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl31f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1C71E1_SORBI (O48958) Cytochrome P450 71E1 (EC 1.14.13.68) (4-hyd... 33 0.15
2ERG1_SCHPO (Q9C1W3) Probable squalene monooxygenase (EC 1.14.99.... 29 3.6
3GA2L1_HUMAN (Q99501) GAS2-like protein 1 (Growth arrest-specific... 28 8.0
4COHA1_MESAU (Q9JMH4) Collagen alpha-1(XVII) chain (Bullous pemph... 28 8.0

>C71E1_SORBI (O48958) Cytochrome P450 71E1 (EC 1.14.13.68)|
           (4-hydroxyphenylacetaldehyde oxime monooxygenase)
          Length = 531

 Score = 33.5 bits (75), Expect = 0.15
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = -1

Query: 274 VGVEEFGGLPFRKKKPLVLVPTRY 203
           V +EE G L F +K PLV+VPT+Y
Sbjct: 502 VSMEETGALTFHRKTPLVVVPTKY 525



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>ERG1_SCHPO (Q9C1W3) Probable squalene monooxygenase (EC 1.14.99.7) (Squalene|
           epoxidase) (SE)
          Length = 457

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -3

Query: 242 PEKKATRAGANTLLPRQGGEVVFSICFSLNKNKRAAYLLSPSTLIC 105
           P    T A  N LL  + GEV+  +  S  K++      +P T++C
Sbjct: 121 PNVTVTEATVNELLRDETGEVITGVVTSSKKSESPVEYKAPLTIVC 166



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>GA2L1_HUMAN (Q99501) GAS2-like protein 1 (Growth arrest-specific 2-like 1)|
           (GAS2-related protein on chromosome 22) (GAR22 protein)
          Length = 681

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
 Frame = +1

Query: 142 RLFLFKEKHIENTTSP----PCLGS----SVLAPARVAFFSGKGGPQTPPRP 273
           R+  F  + +  TTSP    P  GS    S      V+  S K GP+TPPRP
Sbjct: 287 RVCTFSPQRVSPTTSPRPASPVPGSERRGSRPEMTPVSLRSTKEGPETPPRP 338



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>COHA1_MESAU (Q9JMH4) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen 2)|
            (180 kDa bullous pemphigoid antigen 2)
          Length = 1431

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = +1

Query: 172  ENTTSPPCLGSSVLAPARVAFFSGKGGPQTPPRP 273
            E    PP L  S L  +   FFSG  GP  PP P
Sbjct: 914  EGVPGPPGLPGSFLTDSET-FFSGPPGPPGPPGP 946


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,488,084
Number of Sequences: 219361
Number of extensions: 685865
Number of successful extensions: 1702
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1702
length of database: 80,573,946
effective HSP length: 66
effective length of database: 66,096,120
effective search space used: 1586306880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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