ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl31f06 |
|---|---|
| Clone Library Name | barley_pub |
>RECQ4_HUMAN (O94761) ATP-dependent DNA helicase Q4 (EC 3.6.1.-) (RecQ| protein-like 4) (RecQ4) (RTS) Length = 1208 Score = 30.8 bits (68), Expect = 0.80 Identities = 16/37 (43%), Positives = 17/37 (45%) Frame = +2 Query: 227 HWQTSLPASSGELAPTW*ICQPCHSPADAPLGVPRGC 337 H Q SL G L P W Q CHS LG P+ C Sbjct: 174 HLQASLSQRLGSLDPGW--LQRCHSEVPDFLGAPKAC 208
>TNNI_PONLE (P05547) Troponin I (TnI)| Length = 201 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/31 (38%), Positives = 21/31 (67%) Frame = -3 Query: 323 LQEVHLQVSDKAGKFTRSALARLTKQARKFA 231 + E+++QV+D GKF + L +++K KFA Sbjct: 126 INELNIQVNDLRGKFIKPTLKKVSKYENKFA 156
>BGAL_STAXY (O33815) Beta-galactosidase (EC 3.2.1.23) (Lactase)| Length = 994 Score = 29.6 bits (65), Expect = 1.8 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Frame = +1 Query: 76 YKQNEIVG*TSNKYSSMNTTLI*SDWYKFTYF-SFESHFNPS*YSSTTTL 222 Y+Q E +Y++ N TL+ +WY F YF S E++ N S + TL Sbjct: 27 YQQGEADYHFETRYNTRNATLLNGEWY-FQYFESLEAYLNHSNKQESKTL 75
>TNNI_DROME (P36188) Troponin I (Tn I) (Protein wings apart-A) (Protein heldup)| Length = 268 Score = 29.6 bits (65), Expect = 1.8 Identities = 12/31 (38%), Positives = 21/31 (67%) Frame = -3 Query: 323 LQEVHLQVSDKAGKFTRSALARLTKQARKFA 231 + +++ QV+D GKF + AL +++K KFA Sbjct: 184 INDLNAQVNDLRGKFVKPALKKVSKYENKFA 214
>BRR2_YEAST (P32639) Pre-mRNA-splicing helicase BRR2 (EC 3.6.1.-) (Protein| Snu246) Length = 2163 Score = 29.3 bits (64), Expect = 2.3 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Frame = +1 Query: 148 DWYKFTYFSFESHFNPS*YS-STTTLGALANFLACFVRRASADLV 279 DW+ ++YF H NPS Y T+ ++ FL+ V DLV Sbjct: 1771 DWFTYSYFYRRIHVNPSYYGVRDTSPHGISVFLSNLVETCLNDLV 1815
>CT078_HUMAN (Q9BR46) Hypothetical protein C20orf78| Length = 151 Score = 29.3 bits (64), Expect = 2.3 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = +2 Query: 176 LNLILTRRSTHQLLPWAHWQ 235 L+L+LTR+ Q L W+HWQ Sbjct: 71 LDLLLTRKKRSQGLHWSHWQ 90
>MPP5_PONPY (Q5RDQ2) MAGUK p55 subfamily member 5| Length = 675 Score = 28.5 bits (62), Expect = 4.0 Identities = 10/23 (43%), Positives = 17/23 (73%) Frame = +3 Query: 333 VVHAEDTFQHLETHLKPLHHRHG 401 + +A+D Q ++T LKP+HH+ G Sbjct: 183 ISNAQDLAQEVQTVLKPVHHKEG 205
>MPP5_HUMAN (Q8N3R9) MAGUK p55 subfamily member 5| Length = 675 Score = 28.5 bits (62), Expect = 4.0 Identities = 10/23 (43%), Positives = 17/23 (73%) Frame = +3 Query: 333 VVHAEDTFQHLETHLKPLHHRHG 401 + +A+D Q ++T LKP+HH+ G Sbjct: 183 ISNAQDLAQEVQTVLKPVHHKEG 205
>GLMU_RALSO (Q8Y304) Bifunctional protein glmU [Includes:| UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23) (N-acetylglucosamine-1-phosphate uridyltransferase); Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)] Length = 455 Score = 28.5 bits (62), Expect = 4.0 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Frame = -3 Query: 371 SFKVLEGVFGMDNLVGLQEVHLQVSDKAGKFTRSALARLTK-QARKFANAPRVVVDEYYD 195 + L G G D+L G+ VHL G+ R A R+T+ +K AN ++ + E Sbjct: 108 TLNALVGAAGQDHL-GVLTVHLDDPTGYGRIVRDATGRITRIVEQKDANETQLAIHEVNT 166 Query: 194 GL 189 G+ Sbjct: 167 GI 168
>TUS1_YEAST (Q06412) Rho1 guanine nucleotide exchange factor TUS1 (TOR unique| function suppressor protein 1) Length = 1307 Score = 28.5 bits (62), Expect = 4.0 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = -2 Query: 84 LLVPA*LNDNDAVRYLV*PHFNCAPFR 4 +++P+ LND D + +L PH N PF+ Sbjct: 1127 IVLPSFLNDKDMMAHLRHPHLNSLPFK 1153
>V192_BPT7 (P03789) Gene 19.2 protein| Length = 85 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +1 Query: 298 LTCRCTSWSPTRLSMPKTPSSTLKLISSRST 390 +TC SW+ RL++ + TL L+ RST Sbjct: 54 MTCASVSWNTVRLALRYSSCLTLTLVMPRST 84
>KLKR_PRANA (P32824) Renal glandular kallikrein precursor (EC 3.4.21.35)| (Tissue kallikrein) Length = 263 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +1 Query: 313 TSWSPTRLSMPKTPSSTLKLISSRS 387 TSW PT ++P P KLI RS Sbjct: 229 TSWGPTPCALPNVPGIYTKLIEYRS 253
>CADH1_RAT (Q9R0T4) Epithelial-cadherin precursor (E-cadherin) (Uvomorulin)| (Cadherin-1) (CD324 antigen) [Contains: E-Cad/CTF1; E-Cad/CTF2; E-Cad/CTF3] Length = 886 Score = 28.1 bits (61), Expect = 5.2 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 6/39 (15%) Frame = +3 Query: 300 HLQMHLLESHEVVHAED-TFQHLETH--LKPL---HHRH 398 HL++H LE+ +VHA D +++ L T LK L HHRH Sbjct: 92 HLKLHKLETSFLVHAWDSSYRKLSTKVTLKSLGHHHHRH 130
>WDR43_HUMAN (Q15061) WD-repeat protein 43| Length = 720 Score = 28.1 bits (61), Expect = 5.2 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +1 Query: 292 LSLTCRCTSWSPTRLSMPKTP 354 LS TC C +W+P RL ++P Sbjct: 101 LSGTCTCLAWAPARLQAKESP 121
>SLIK2_MOUSE (Q810C0) SLIT and NTRK-like protein 2 precursor| Length = 846 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = +3 Query: 270 RPGEFASLVTHLQMHLLESHEVVHAEDTFQHLET 371 RPG F+ L T ++HL + V EDTF LE+ Sbjct: 102 RPGAFSGLKTLKRLHLNNNKLEVLREDTFLGLES 135
>ICAM5_MOUSE (Q60625) Intercellular adhesion molecule 5 precursor (ICAM-5)| (Telencephalin) Length = 917 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Frame = +1 Query: 295 SLTCRCTSWSPTRLSMPKTPSS-TLKLISSRSTTGMA 402 +LTCR +W P ++S P + L L S+ ST +A Sbjct: 764 TLTCRAEAWPPAQISWRAPPGALNLGLSSNNSTLSVA 800
>APJ_MOUSE (Q9WV08) Apelin receptor (G-protein coupled receptor APJ)| (Angiotensin receptor-like 1) (MSR) Length = 377 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -1 Query: 157 CTSLTKLVLCSWRSIYLMFNQQFRSACTSLTE*Q*CC 47 CT ++ + C +Y F+ +FR ACTS+ CC Sbjct: 292 CTCISYVNSCLNPFLYAFFDPRFRQACTSML----CC 324
>APJ_MACMU (O97666) Apelin receptor (G-protein coupled receptor APJ)| (Angiotensin receptor-like 1) Length = 380 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -1 Query: 157 CTSLTKLVLCSWRSIYLMFNQQFRSACTSLTE*Q*CC 47 CT ++ + C +Y F+ +FR ACTS+ CC Sbjct: 294 CTCISYVNSCLNPFLYAFFDPRFRQACTSML----CC 326
>APJ_HUMAN (P35414) Apelin receptor (G-protein coupled receptor APJ)| (Angiotensin receptor-like 1) (HG11) Length = 380 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -1 Query: 157 CTSLTKLVLCSWRSIYLMFNQQFRSACTSLTE*Q*CC 47 CT ++ + C +Y F+ +FR ACTS+ CC Sbjct: 294 CTCISYVNSCLNPFLYAFFDPRFRQACTSML----CC 326
>ABCA1_MOUSE (P41233) ATP-binding cassette sub-family A member 1 (ATP-binding| cassette transporter 1) (ATP-binding cassette 1) (ABC-1) Length = 2261 Score = 28.1 bits (61), Expect = 5.2 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 5/50 (10%) Frame = +1 Query: 247 CFVRRASADLVNLPALSLTCRCTSWSPTRLSMP-----KTPSSTLKLISS 381 CF +++ NLP L+L WS T L P K PS+ +++S Sbjct: 1723 CFQQKSYVSSTNLPVLALLLLLYGWSITPLMYPASFVFKIPSTAYVVLTS 1772
>ABCA1_HUMAN (O95477) ATP-binding cassette sub-family A member 1 (ATP-binding| cassette transporter 1) (ATP-binding cassette 1) (ABC-1) (Cholesterol efflux regulatory protein) Length = 2261 Score = 28.1 bits (61), Expect = 5.2 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 5/50 (10%) Frame = +1 Query: 247 CFVRRASADLVNLPALSLTCRCTSWSPTRLSMP-----KTPSSTLKLISS 381 CF +++ NLP L+L WS T L P K PS+ +++S Sbjct: 1723 CFQQKSYVSSTNLPVLALLLLLYGWSITPLMYPASFVFKIPSTAYVVLTS 1772
>HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor| Length = 351 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/33 (39%), Positives = 14/33 (42%) Frame = +3 Query: 300 HLQMHLLESHEVVHAEDTFQHLETHLKPLHHRH 398 H H E HE H E H E H +P H H Sbjct: 61 HHHHHPEEHHEPHHEEHHHHHPEEHHEPHHEEH 93
>PLK3_RAT (Q9R011) Serine/threonine-protein kinase PLK3 (EC 2.7.11.21)| (Polo-like kinase 3) (PLK-3) (Cytokine-inducible serine/threonine-protein kinase) (FGF-inducible kinase) (Fragment) Length = 615 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -1 Query: 145 TKLVLCSWRSIYLMFNQQFRSACTSL 68 TKL+L W + + F + RSACT L Sbjct: 561 TKLILSGWEPLLVTFVARNRSACTYL 586
>PLK3_HUMAN (Q9H4B4) Serine/threonine-protein kinase PLK3 (EC 2.7.11.21)| (Polo-like kinase 3) (PLK-3) (Cytokine-inducible serine/threonine-protein kinase) (FGF-inducible kinase) (Proliferation-related kinase) Length = 646 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -1 Query: 145 TKLVLCSWRSIYLMFNQQFRSACTSL 68 TKL+L W + + F + RSACT L Sbjct: 591 TKLILSGWEPLLVTFVARNRSACTYL 616
>YFCM_ECOLI (P76938) Hypothetical protein yfcM| Length = 182 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/53 (28%), Positives = 24/53 (45%) Frame = -3 Query: 359 LEGVFGMDNLVGLQEVHLQVSDKAGKFTRSALARLTKQARKFANAPRVVVDEY 201 LEG F D +V + VH QV D AR K + + + P + +++ Sbjct: 123 LEGDFEPDRVVFQRRVHAQVMDYLTNGIPERPARFIKALQNYYHTPELTAEQF 175
>PLK3_MOUSE (Q60806) Serine/threonine-protein kinase PLK3 (EC 2.7.11.21)| (Polo-like kinase 3) (PLK-3) (Cytokine-inducible serine/threonine-protein kinase) (FGF-inducible kinase) Length = 631 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -1 Query: 145 TKLVLCSWRSIYLMFNQQFRSACTSL 68 TKL+L W + + F + RSACT L Sbjct: 576 TKLILSGWEPLLVTFVARNRSACTYL 601
>APJ_RAT (Q9JHG3) Apelin receptor (G-protein coupled receptor APJ)| (Angiotensin receptor-like 1) (B78) (GPCR34) Length = 377 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -1 Query: 157 CTSLTKLVLCSWRSIYLMFNQQFRSACTSLTE*Q*CC 47 CT ++ + C +Y F+ +FR ACTS+ CC Sbjct: 292 CTCISYVNSCLNPFLYAFFDPRFRRACTSML----CC 324
>MOT1_YEAST (P32333) TATA-binding protein-associated factor MOT1 (EC 3.6.1.-)| (TBP-associated factor MOT1) (Modifier of transcription 1) Length = 1867 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Frame = +3 Query: 279 EFASLVTHLQMHLLESHEVVHAEDTFQHL-ETHLKPLHH 392 E L + + LLE ++V H E T H+ HL+P+ H Sbjct: 603 ELLQLSFDVYVALLEHYKVKHTEKTLDHVFSKHLQPILH 641
>NOP58_YEAST (Q12499) Nucleolar protein NOP58 (Nucleolar protein NOP5)| Length = 511 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/51 (23%), Positives = 31/51 (60%) Frame = +1 Query: 229 LANFLACFVRRASADLVNLPALSLTCRCTSWSPTRLSMPKTPSSTLKLISS 381 L+N+L+ ++ + +L L + R + S + +S+ K+P+ST++++ + Sbjct: 272 LSNYLSARMKAIAPNLTQLVGELVGARLIAHSGSLISLAKSPASTIQILGA 322 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,602,965 Number of Sequences: 219361 Number of extensions: 1110631 Number of successful extensions: 2943 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 2871 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2940 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
