>HIS52_VIBVY (Q7MPP4) Imidazole glycerol phosphate synthase subunit hisH2 (EC|
           2.4.2.-) (IGP synthase glutamine amidotransferase
           subunit) (IGP synthase subunit hisH2) (ImGP synthase
           subunit hisH2) (IGPS subunit hisH2)
          Length = 214

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 114 GKWNLMRPGLRLPILHLKWNLLALQNHTSILEVPERKK*CAEKHTKMWIS 263
           GK   MRPG  L + H+ WN L L+   S+ +  +  K     H+ +W++
Sbjct: 106 GKVEYMRPGNDLRVPHVGWNSLILKKENSLFDYLQDDKDFYFVHS-LWVN 154

>SYE_PSEPK (Q88LF6) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA|
           ligase) (GluRS)
          Length = 493

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +2

Query: 17  SSK*QVVPLVSNSLVDIIQNFYCSCGSRSIATWEMESHASGITPSY 154
           S + ++    +  LVD    FYC C +  +     E  A G TP Y
Sbjct: 85  SERGEIYAKYAKELVDAGHAFYCFCTAEELEQMRAEQQARGETPRY 130

>IF2_THET8 (P48515) Translation initiation factor IF-2|
          Length = 571

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 122 ESHASGITPSYPTFEMESPCTTEPYVHTGGSRKKKVMRGKAYKNVDIS 265
           E  A GIT     FE+++P  T  ++ T G      +R +  K  DI+
Sbjct: 100 EKEAGGITQHVGAFEVKTPQGTVVFIDTPGHEAFTTIRQRGAKVADIA 147

>IF2_THET2 (Q72KE8) Translation initiation factor IF-2|
          Length = 571

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 122 ESHASGITPSYPTFEMESPCTTEPYVHTGGSRKKKVMRGKAYKNVDIS 265
           E  A GIT     FE+++P  T  ++ T G      +R +  K  DI+
Sbjct: 100 EKEAGGITQHVGAFEVKTPQGTVVFIDTPGHEAFTTIRQRGAKVADIA 147

>ZN539_HUMAN (Q86XL7) Zinc finger protein 539|
          Length = 659

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 161 FEMESPCTTEPYVHTGGSRKKKVMRGKAYKNV 256
           F   S  TT   +HTG  R K +  GKA+K +
Sbjct: 359 FSQSSTLTTHKIIHTGEKRYKCLECGKAFKQL 390

>R1AB_CVM2 (Q9PYA3) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
           [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
           [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like
           proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44);
           3C-like proteinase (
          Length = 7124

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 62  DIIQNFYCSCGSRSIATWEMESHASGITP 148
           +++  F C   S+S   WE+E+ +SG+ P
Sbjct: 404 NMMDGFLCPGCSKSYMPWELEAQSSGVIP 432

>CSF1_YEAST (Q12150) Protein CSF1 (Cold sensitive for fermentation protein 1)|
          Length = 2958

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
 Frame = +1

Query: 88   MRFSLNCYMGNGISCVRDYAFLSYI*NGISLHYRTIRPYWRFQKEKSDARKSI------- 246
            +  SLNC MG+G+    D +FL +      L +     Y    K++S+ R+ I       
Sbjct: 1049 LTISLNCVMGDGV----DTSFLKF---ETKLRFTNFEQYKDIDKKRSEQRRYITIHDSPY 1101

Query: 247  QKCGYL*P 270
             +C +L P
Sbjct: 1102 HRCPFLLP 1109

>CH004_BOVIN (Q5E969) Protein C8orf4 homolog|
          Length = 106

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
 Frame = +2

Query: 146 PSYPTFEMESPCTTEPYVH----TGGSRKKKVMRGKAYKNVD 259
           PS+P F M +     P +H       SRKK V  G  ++N+D
Sbjct: 5   PSHPAFSMSTSLRVSPSIHGYHFDTASRKKAV--GNIFENID 44

>YL462_MIMIV (Q5UQC7) Hypothetical protein L462|
          Length = 200

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
 Frame = +2

Query: 44  VSNSLVDIIQNFYCSCGSRSIATWEM----------ESHASGITPSYPTF 163
           + N L+D IQ +  SCG + I   E+           SH   I P  P+F
Sbjct: 102 IENELIDKIQKYLGSCGIKMIVREELVDNIFMFRDKSSHYCEIVPKPPSF 151

>ES1_HUMAN (P30042) ES1 protein homolog, mitochondrial precursor (Protein|
           KNP-I) (Protein GT335)
          Length = 268

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 295 EEHTDEKNLVRDIHIFVCFSAHHFFLSGTSSM 200
           E H D+KN V     F+C +A H+   G  +M
Sbjct: 227 EAHVDQKNKVVTTPAFMCETALHYIHDGIGAM 258

>ANGT_HUMAN (P01019) Angiotensinogen precursor [Contains: Angiotensin-1|
           (Angiotensin I) (Ang I); Angiotensin-2 (Angiotensin II)
           (Ang II); Angiotensin-3 (Angiotensin III) (Ang III)
           (Des-Asp[1]-angiotensin II)]
          Length = 485

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = +3

Query: 12  VDPVNSKLFHLSVIHWLT*FRISTVHAVLAQL-LHGKWNL--MRPGLRLP-ILHLKWNLL 179
           +D V    F  + ++W+      T+H  + QL L G ++L  +     LP ILH + NL 
Sbjct: 353 LDKVEGLTFQQNSLNWMKKLSPRTIHLTMPQLVLQGSYDLQDLLAQAELPAILHTELNLQ 412

Query: 180 ALQN 191
            L N
Sbjct: 413 KLSN 416

>ANGT_GORGO (Q9GLP6) Angiotensinogen precursor [Contains: Angiotensin-1|
           (Angiotensin I) (Ang I); Angiotensin-2 (Angiotensin II)
           (Ang II); Angiotensin-3 (Angiotensin III) (Ang III)
           (Des-Asp[1]-angiotensin II)]
          Length = 485

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = +3

Query: 12  VDPVNSKLFHLSVIHWLT*FRISTVHAVLAQL-LHGKWNL--MRPGLRLP-ILHLKWNLL 179
           +D V    F  + ++W+      T+H  + QL L G ++L  +     LP ILH + NL 
Sbjct: 353 LDKVEGLTFQQNSLNWMKKLSPRTIHLTMPQLVLQGSYDLQDLLAQAELPAILHTELNLQ 412

Query: 180 ALQN 191
            L N
Sbjct: 413 KLSN 416

>LNT_SALTY (O87576) Apolipoprotein N-acyltransferase (EC 2.3.1.-) (ALP|
           N-acyltransferase) (Copper homeostasis protein cutE)
          Length = 512

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
 Frame = -1

Query: 285 LTRRTW--LEISTFLYAFP----RITFFFLEPPVWTYGSVVQGD 172
           L  R W  L ++  L+A P     I +F LEP   T  S+VQGD
Sbjct: 187 LATRNWRPLAVAVILFALPFPLRYIQWFTLEPAKATQVSLVQGD 230

>LNT_SALTI (Q8Z8G7) Apolipoprotein N-acyltransferase (EC 2.3.1.-) (ALP|
           N-acyltransferase) (Copper homeostasis protein cutE)
          Length = 512

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
 Frame = -1

Query: 285 LTRRTW--LEISTFLYAFP----RITFFFLEPPVWTYGSVVQGD 172
           L  R W  L ++  L+A P     I +F LEP   T  S+VQGD
Sbjct: 187 LATRNWRPLAVAVILFALPFPLRYIQWFTLEPTKATQVSLVQGD 230


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,810,567
Number of Sequences: 219361
Number of extensions: 1018769
Number of successful extensions: 2769
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2769
length of database: 80,573,946
effective HSP length: 82
effective length of database: 62,586,344
effective search space used: 1502072256
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)