ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl31f05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CR388384.13| Zebrafish DNA sequence from clone DKEY-22O22 in... 42 1.1
2emb|BX005012.7| Zebrafish DNA sequence from clone DKEY-11P23 in ... 42 1.1
3gb|AC132372.4| Mus musculus BAC clone RP23-478B10 from 8, comple... 42 1.1
4gb|AC115044.10| Mus musculus chromosome 3, clone RP24-297E7, com... 40 4.2
5emb|AL357975.9| Human DNA sequence from clone RP11-72L13 on chro... 40 4.2

>emb|CR388384.13| Zebrafish DNA sequence from clone DKEY-22O22 in linkage group 16,
            complete sequence
          Length = 123845

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 239  aaagcatacaaaaatgtggat 259
            |||||||||||||||||||||
Sbjct: 9808 aaagcatacaaaaatgtggat 9828



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>emb|BX005012.7| Zebrafish DNA sequence from clone DKEY-11P23 in linkage group 16,
             complete sequence
          Length = 213678

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 239   aaagcatacaaaaatgtggat 259
             |||||||||||||||||||||
Sbjct: 90545 aaagcatacaaaaatgtggat 90525



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>gb|AC132372.4| Mus musculus BAC clone RP23-478B10 from 8, complete sequence
          Length = 178694

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 203   actggaggttccagaaagaaaaaag 227
             |||||||||| ||||||||||||||
Sbjct: 95728 actggaggttgcagaaagaaaaaag 95752



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>gb|AC115044.10| Mus musculus chromosome 3, clone RP24-297E7, complete sequence
          Length = 143527

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 32    gttgttccacttgtcagtaa 51
             ||||||||||||||||||||
Sbjct: 45411 gttgttccacttgtcagtaa 45392



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>emb|AL357975.9| Human DNA sequence from clone RP11-72L13 on chromosome 1 Contains the
            3' end of a novel gene (IMAGE:5742758), complete sequence
          Length = 61198

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 261  tctctaaccaagttcttctc 280
            ||||||||||||||||||||
Sbjct: 8952 tctctaaccaagttcttctc 8971


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,387,582
Number of Sequences: 3902068
Number of extensions: 3387582
Number of successful extensions: 60708
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60702
Number of HSP's gapped (non-prelim): 6
length of query: 321
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 299
effective length of database: 17,147,199,772
effective search space: 5127012731828
effective search space used: 5127012731828
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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