ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl31e09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GLMS_TREPA (O83833) Glucosamine--fructose-6-phosphate aminotrans... 31 0.83
2MURE_LISMO (Q8Y5L9) UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-... 29 3.2
3PHSA_SALTY (P37600) Thiosulfate reductase precursor (EC 1.-.-.-) 28 4.1
4NPY6R_RABIT (P79217) Neuropeptide Y receptor type 6 (NPY6-R) 28 7.0
5LSHB_HORSE (P08751) Lutropin/choriogonadotropin beta chain precu... 27 9.2
6COMA_CONMA (Q9TWL9) Conodipine-M alpha chain (EC 3.1.1.4) 27 9.2
7M4A8A_MOUSE (Q99N10) Membrane-spanning 4-domains subfamily A mem... 27 9.2

>GLMS_TREPA (O83833) Glucosamine--fructose-6-phosphate aminotransferase|
           [isomerizing] (EC 2.6.1.16) (Hexosephosphate
           aminotransferase) (D-fructose-6-phosphate
           amidotransferase) (GFAT)
           (L-glutamine-D-fructose-6-phosphate amidotransferase)
           (Glucosamine-6-ph
          Length = 634

 Score = 30.8 bits (68), Expect = 0.83
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 255 CN*LQSCLVARMDRHATCTHSGGHVGVELVVSFDLKLICICI 130
           CN  +S LV   D     TH+G  +GV    SF  +L+C+ +
Sbjct: 387 CNGARSTLVRESDA-VLLTHAGSEIGVASTKSFTTQLVCLLV 427



to top

>MURE_LISMO (Q8Y5L9) UDP-N-acetylmuramoylalanyl-D-glutamate--2,|
           6-diaminopimelate ligase (EC 6.3.2.13)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase)
          Length = 491

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
 Frame = +1

Query: 112 NFQYTLDTYTNKLKVKRHHQFNSYMSTRVGTSGMPVHSGNQTRLQLVTA---LVDGIKMF 282
           ++ +T++ Y N   +      NSY ++    + +        R+Q  TA   +  GIK  
Sbjct: 205 DYHHTMEEYANAKSLLFAQLGNSYHTSNPKIAVLNADDAESVRMQKATAAHIITFGIKQE 264

Query: 283 LDEPPANAEV*EHSEGSSVTT---TFTSEHAMLGN 378
            D   +N ++  H     + T    FT +  M+GN
Sbjct: 265 ADFQASNIKITSHGSTFDLGTPVGNFTLKIKMIGN 299



to top

>PHSA_SALTY (P37600) Thiosulfate reductase precursor (EC 1.-.-.-)|
          Length = 758

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 98  SSKDVTFSTHLIHIQISLRSKDTTSSTPTCP 190
           SSK  + S+HL H+  +  S +T +   TCP
Sbjct: 145 SSKSGSLSSHLFHLATAFGSPNTFTHASTCP 175



to top

>NPY6R_RABIT (P79217) Neuropeptide Y receptor type 6 (NPY6-R)|
          Length = 371

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 127 VCTESYIFRTDTALSFTSTVCLAFFVDLRSLIFCGVYVSSC 5
           VC E +  +T+  L  TS + L +FV L  +  C + +  C
Sbjct: 195 VCVEHWPSKTNQLLYSTSLIMLQYFVPLGFMFICYLKIVIC 235



to top

>LSHB_HORSE (P08751) Lutropin/choriogonadotropin beta chain precursor|
           (LSH-B/CG-B) (Lutenizing hormone beta subunit)
          Length = 169

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -2

Query: 216 RHATCTHSGGHVGVELVVSFDLKLICICIKCVLKVTSLELIR 91
           R A+    G   GV+ +VSF + L C C  C +K T   + R
Sbjct: 83  RFASIRLPGCPPGVDPMVSFPVALSCHCGPCQIKTTDCGVFR 124



to top

>COMA_CONMA (Q9TWL9) Conodipine-M alpha chain (EC 3.1.1.4)|
          Length = 77

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 243 QSCLVARMDRHATCTHSGGHVG 178
           Q   +A  DRH TC H G H G
Sbjct: 26  QKXFLAACDRHDTCYHCGKHFG 47



to top

>M4A8A_MOUSE (Q99N10) Membrane-spanning 4-domains subfamily A member 8A (CD20|
           antigen-like 5) (Fragment)
          Length = 287

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 175 NSYMSTRVGTSGMPVHSGNQTRLQLVTALVDGIKMFLDEPPA 300
           NSY         MP++  NQ ++ +++  + G+   + EPPA
Sbjct: 56  NSYPVVPGTVPQMPIYPSNQPQVHVISGHLPGLVPAMTEPPA 97


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,091,795
Number of Sequences: 219361
Number of extensions: 1208789
Number of successful extensions: 3180
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3180
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 1402043640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top