ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl31e08 |
|---|---|
| Clone Library Name | barley_pub |
>CYB_PLAFA (Q02768) Cytochrome b| Length = 376 Score = 30.8 bits (68), Expect = 0.83 Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 31/121 (25%) Frame = -1 Query: 382 MRSINHMCLFLPLS-------------S*LVGTIQCWSSLCEW-----------LPVAFG 275 +R +N+ ++LPLS + VG + W + W +PVA Sbjct: 94 LRGLNYSYMYLPLSWISGLILFMIFIVTAFVGYVLPWGQMSYWGATVITNLLSSIPVAVI 153 Query: 274 WFCEFY-------RSFFRLYMD*VCCAVLLARS*YALACFVIVHMCMVFLGLFYVHAYGQ 116 W C Y + FF L+ + +C+VF+ +F++H +G Sbjct: 154 WICGGYTVSDPTIKRFFVLHF-----------------ILPFIGLCIVFIHIFFLHLHGS 196 Query: 115 S 113 + Sbjct: 197 T 197
>YCF2_ANTFO (Q859W7) Protein ycf2| Length = 2392 Score = 30.8 bits (68), Expect = 0.83 Identities = 16/44 (36%), Positives = 23/44 (52%) Frame = +1 Query: 145 REKPYTYGQSQNKLEHTRTLQAAQHSTLSPCTNERMTYKIRKTN 276 REK T+ S+N E + Q AQ+ T ER+ +IR+ N Sbjct: 2108 REKEQTFSVSENSREIFHSSQVAQYKTKEELPYERILSRIRRRN 2151
>ADRB1_PIG (Q28998) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1| adrenoreceptor) Length = 468 Score = 30.0 bits (66), Expect = 1.4 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 6/72 (8%) Frame = -1 Query: 334 LVGTIQCWSSLCEWLPVAFGWFCEFYRSFFRLYMD*VCCAVLLARS*YALACFVI---VH 164 LV T+ S+L +LP+ W+ + R Y D CC + R+ YA+A V+ V Sbjct: 177 LVCTVWAISALVSFLPILMHWWRDKGAEARRCYNDPKCCDFVTNRA-YAIASSVVSFYVP 235 Query: 163 MCM---VFLGLF 137 +C+ V+L +F Sbjct: 236 LCIMAFVYLRVF 247
>ADRB1_MELGA (P07700) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1| adrenoreceptor) (Beta-T) Length = 483 Score = 30.0 bits (66), Expect = 1.4 Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 1/75 (1%) Frame = -1 Query: 334 LVGTIQCWSSLCEWLPVAFGWFCEFYRSFFRLYMD*VCCAVLLARS*YALACFVIVHMCM 155 ++ T+ S+L +LP+ W+ + + Y D CC + R+ YA+A +I Sbjct: 161 IICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRA-YAIASSIISFYIP 219 Query: 154 VFLGLF-YVHAYGQS 113 + + +F Y+ Y ++ Sbjct: 220 LLIMIFVYLRVYREA 234
>IF2_PSYAR (Q4FVL5) Translation initiation factor IF-2| Length = 908 Score = 30.0 bits (66), Expect = 1.4 Identities = 18/61 (29%), Positives = 29/61 (47%) Frame = +1 Query: 97 QNIPRGTAHTHVRKTNREKPYTYGQSQNKLEHTRTLQAAQHSTLSPCTNERMTYKIRKTN 276 + I RGT+ T R R K + +N+ R+ Q+AQH P E++ Y + + Sbjct: 276 REIKRGTSSTTARGRGRRKNQDEREIKNRKNGLRSSQSAQHKFEKPV--EKIVYDVEISE 333 Query: 277 Q 279 Q Sbjct: 334 Q 334
>CYB_PLAVS (O63696) Cytochrome b| Length = 382 Score = 29.6 bits (65), Expect = 1.8 Identities = 25/121 (20%), Positives = 44/121 (36%), Gaps = 31/121 (25%) Frame = -1 Query: 382 MRSINHMCLFLPLS-------------S*LVGTIQCWSSLCEW-----------LPVAFG 275 +R +N+ L+LPLS + +G + W + W +PV Sbjct: 94 LRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPVLVI 153 Query: 274 WFCEFY-------RSFFRLYMD*VCCAVLLARS*YALACFVIVHMCMVFLGLFYVHAYGQ 116 W C Y + FF L+ V +C+VF+ +F++H +G Sbjct: 154 WLCGGYTVSDPTIKRFFVLHF-----------------ILPFVALCIVFIHIFFLHLHGS 196 Query: 115 S 113 + Sbjct: 197 T 197
>SNIP1_HUMAN (Q8TAD8) Smad nuclear-interacting protein 1| Length = 396 Score = 29.3 bits (64), Expect = 2.4 Identities = 18/58 (31%), Positives = 28/58 (48%) Frame = +1 Query: 109 RGTAHTHVRKTNREKPYTYGQSQNKLEHTRTLQAAQHSTLSPCTNERMTYKIRKTNQK 282 R H+H R+T+ E+P + GQ Q + T+ LQA + ER Y R+ + Sbjct: 142 RHRGHSHQRRTSNERPGS-GQGQGRDRDTQNLQAQE--------EEREFYNARRREHR 190
>ZN75A_HUMAN (Q96N20) Zinc finger protein 75A| Length = 296 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 7/46 (15%) Frame = +1 Query: 121 HTHVRKTNREKPYT-------YGQSQNKLEHTRTLQAAQHSTLSPC 237 HTH R EKP+T + Q+ + ++H RT Q T S C Sbjct: 233 HTHQRTHTGEKPFTCHECGKKFSQNSHLIKHRRTHTGEQPYTCSIC 278
>AROK_CORGL (Q9X5D1) Shikimate kinase (EC 2.7.1.71) (SK)| Length = 169 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/56 (28%), Positives = 27/56 (48%) Frame = +1 Query: 130 VRKTNREKPYTYGQSQNKLEHTRTLQAAQHSTLSPCTNERMTYKIRKTNQKPQVAI 297 +R+T E+ Q+ + EH R L + +P E TY++R N+ PQ + Sbjct: 108 IRRTANERSRPVLQAADPAEHYRNLVKVR----TPLYEEVATYRLRTNNRSPQQVV 159
>ATP6_TRYBB (P24499) ATP synthase a chain (EC 3.6.3.14) (ATPase protein 6)| Length = 229 Score = 28.9 bits (63), Expect = 3.1 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 1/68 (1%) Frame = -1 Query: 322 IQCWSSLCEWLPVAFGWFCEFYRSFFRLYMD*VCCAVLLARS*YALAC-FVIVHMCMVFL 146 ++C+S LC L FC S F L M + Y + C F++ F Sbjct: 130 LECFSLLCRCLSTFLRLFCNLLSSHFLLLMFFDFFYFIFVFFFYGVFCYFILFIFVFCFC 189 Query: 145 GLFYVHAY 122 LFYV Y Sbjct: 190 LLFYVFLY 197
>Y4JN_RHISN (P55514) Hypothetical 16.3 kDa protein y4jN| Length = 146 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%) Frame = -2 Query: 330 LARSNAGHLCANGYL--WLLVGFANFIGHSFVCTWTECAVLCCLQGPSM 190 L+ S + H+ A +L W L GF I F+ +C + L GP++ Sbjct: 32 LSSSRSAHVAAADHLIGWFLAGFRQRIHKPFMLRTVQCDRIYVLAGPNL 80
>NUP59_YEAST (Q05166) Nucleoporin ASM4 (Nuclear pore protein NUP59)| Length = 528 Score = 28.5 bits (62), Expect = 4.1 Identities = 23/98 (23%), Positives = 43/98 (43%) Frame = +3 Query: 24 NSTTRHIGNI*LSVLHQNDSVNNLPKHTQGDCPYACT*NKPRKTIHIWTITKQARAY*DL 203 N+ + +IGN ++ + + NN+ +H QG+ P N P+K T+ ++ Sbjct: 72 NNYSSNIGNNSINNNNIKNGTNNISQHGQGNNPSWV--NNPKKRFTPHTVIRR------- 122 Query: 204 ASSTAQHTQSMYKRKNDL*NSQNQPKATGSHSHKDDQH 317 T + S +ND +S N S ++D +H Sbjct: 123 --KTTKQNSSSDINQNDDSSSMNATMRNFSKQNQDSKH 158
>ILVD_RALSO (Q8XWR1) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)| Length = 557 Score = 28.1 bits (61), Expect = 5.4 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 6/71 (8%) Frame = +1 Query: 97 QNIPRGTAHTHVRKTNREKPYTYGQSQNKLEHTRTLQAAQHSTLSPCTN------ERMTY 258 Q+I +G A R NR Y G + + A HST++PC + + Sbjct: 8 QHITQGVA----RSPNRSMYYALGYKKEDFSNPMIGVANGHSTITPCNSGLQKLADAAVA 63 Query: 259 KIRKTNQKPQV 291 ++ +N PQ+ Sbjct: 64 AVKASNANPQI 74
>SYGB_HELPY (P56454) Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)| (Glycine--tRNA ligase beta chain) (GlyRS) Length = 701 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = +2 Query: 125 RMYVKQTEKNHTHMDNHKTS*SILGPCKQHSTAHSVHVQT 244 + Y + EKNH +D K IL K+ T H + V+T Sbjct: 210 KAYFEVLEKNHVILDPKKREAKILQEIKELETKHHIIVET 249
>CSTA_ECOLI (P15078) Carbon starvation protein A| Length = 701 Score = 28.1 bits (61), Expect = 5.4 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = -1 Query: 187 LACFVIVHMCMVFLGLFYVHAYGQSPWVCFGRLFTL 80 +ACF+I+ + + L + V A SPW + FT+ Sbjct: 165 VACFMIMVIILAVLAMIVVKALTHSPWGTYTVAFTI 200
>CYB_PLACH (O99256) Cytochrome b| Length = 376 Score = 28.1 bits (61), Expect = 5.4 Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 31/121 (25%) Frame = -1 Query: 382 MRSINHMCLFLPLS-------------S*LVGTIQCWSSLCEW-----------LPVAFG 275 +R +N+ L+LPLS + +G + W + W +P Sbjct: 94 LRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIPALVI 153 Query: 274 WFCEFY-------RSFFRLYMD*VCCAVLLARS*YALACFVIVHMCMVFLGLFYVHAYGQ 116 W C Y + FF L+ V +C+VF+ +F++H +G Sbjct: 154 WLCGGYTVSDPTIKRFFVLHF-----------------ILPFVALCIVFIHIFFLHLHGS 196 Query: 115 S 113 + Sbjct: 197 T 197
>LPXA_CHRVI (Q46481) Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine| O-acyltransferase (EC 2.3.1.129) (UDP-N-acetylglucosamine acyltransferase) Length = 259 Score = 28.1 bits (61), Expect = 5.4 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = -2 Query: 345 SHHDWLARSNAGHLCANGYLWLLVGFANFIGH 250 SH+ W+A S+AGH C G + A GH Sbjct: 108 SHNYWMAFSHAGHDCVVGDHNVFANTATLAGH 139
>WNT5_DROME (P28466) Protein Wnt-5 precursor (dWnt-5) (dWnt-3)| Length = 1004 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/50 (28%), Positives = 20/50 (40%) Frame = -2 Query: 348 PSHHDWLARSNAGHLCANGYLWLLVGFANFIGHSFVCTWTECAVLCCLQG 199 P+ HD + + C N Y G + H CA+LCC +G Sbjct: 918 PTAHDLIYLDESPDWCRNSYALHWPGTHGRVCHKNSSGLESCAILCCGRG 967
>ADRB1_SHEEP (Q28927) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1| adrenoreceptor) (BETA1AR) Length = 467 Score = 27.7 bits (60), Expect = 7.0 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 6/72 (8%) Frame = -1 Query: 334 LVGTIQCWSSLCEWLPVAFGWFCEFYRSFFRLYMD*VCCAVLLARS*YALACFVI---VH 164 LV T+ S+L +LP+ W+ + R Y D CC ++ YA+ V+ V Sbjct: 178 LVCTVWAISALVSFLPIFMQWWGDKDAKASRCYNDPECCDFIINEG-YAITSSVVSFYVP 236 Query: 163 MCM---VFLGLF 137 +C+ V+L +F Sbjct: 237 LCIMAFVYLRVF 248
>ADRB1_BOVIN (Q9TT96) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1| adrenoreceptor) Length = 467 Score = 27.7 bits (60), Expect = 7.0 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 6/72 (8%) Frame = -1 Query: 334 LVGTIQCWSSLCEWLPVAFGWFCEFYRSFFRLYMD*VCCAVLLARS*YALACFVI---VH 164 LV T+ S+L +LP+ W+ + R Y D CC ++ YA+ V+ V Sbjct: 178 LVCTVWAISALVSFLPIFMQWWGDKDAKASRCYNDPECCDFIINEG-YAITSSVVSFYVP 236 Query: 163 MCM---VFLGLF 137 +C+ V+L +F Sbjct: 237 LCIMAFVYLRVF 248
>SPIKE_CVBV (P25194) Spike glycoprotein precursor (Peplomer protein) (E2)| [Contains: Spike protein S1 (90B); Spike protein S2 (90A)] Length = 1363 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%) Frame = -2 Query: 291 YLWLLVGFAN---FIGHSFVCTWTECAVLC 211 Y+WLL+GFA + F+C T C C Sbjct: 1309 YVWLLIGFAGVAMLVLLFFICCCTGCGTSC 1338
>SPIKE_CVBQ (P25193) Spike glycoprotein precursor (Peplomer protein) (E2)| [Contains: Spike protein S1 (90B); Spike protein S2 (90A)] Length = 1363 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%) Frame = -2 Query: 291 YLWLLVGFAN---FIGHSFVCTWTECAVLC 211 Y+WLL+GFA + F+C T C C Sbjct: 1309 YVWLLIGFAGVAMLVLLFFICCCTGCGTSC 1338
>SPIKE_CVBM (P15777) Spike glycoprotein precursor (Peplomer protein) (E2)| [Contains: Spike protein S1 (90B); Spike protein S2 (90A)] Length = 1363 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%) Frame = -2 Query: 291 YLWLLVGFAN---FIGHSFVCTWTECAVLC 211 Y+WLL+GFA + F+C T C C Sbjct: 1309 YVWLLIGFAGVAMLVLLFFICCCTGCGTSC 1338
>SPIKE_CVBL9 (P25191) Spike glycoprotein precursor (Peplomer protein) (E2)| [Contains: Spike protein S1 (90B); Spike protein S2 (90A)] Length = 1363 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%) Frame = -2 Query: 291 YLWLLVGFAN---FIGHSFVCTWTECAVLC 211 Y+WLL+GFA + F+C T C C Sbjct: 1309 YVWLLIGFAGVAMLVLLFFICCCTGCGTSC 1338
>SPIKE_CVBF (P25190) Spike glycoprotein precursor (Peplomer protein) (E2)| [Contains: Spike protein S1 (90B); Spike protein S2 (90A)] Length = 1363 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%) Frame = -2 Query: 291 YLWLLVGFAN---FIGHSFVCTWTECAVLC 211 Y+WLL+GFA + F+C T C C Sbjct: 1309 YVWLLIGFAGVAMLVLLFFICCCTGCGTSC 1338
>Y663_GLOVI (Q7NMV2) UPF0078 membrane protein gll0663| Length = 205 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = -2 Query: 333 WLARSNAGHLCANGYLWLLVGFANFIGHSF 244 WLAR+ AG A ++ L G A +GHS+ Sbjct: 72 WLARTLAGGEDAGAWIVLGAGLAAIVGHSW 101
>CYB_PLABE (O99253) Cytochrome b| Length = 376 Score = 27.3 bits (59), Expect = 9.1 Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 31/121 (25%) Frame = -1 Query: 382 MRSINHMCLFLPLS-------------S*LVGTIQCWSSLCEW-----------LPVAFG 275 +R +N+ L+LPLS + +G + W + W +P Sbjct: 94 LRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIPSLVI 153 Query: 274 WFCEFY-------RSFFRLYMD*VCCAVLLARS*YALACFVIVHMCMVFLGLFYVHAYGQ 116 W C Y + FF L+ V +C+VF+ +F++H +G Sbjct: 154 WLCGGYTVSDPTIKRFFVLHF-----------------ILPFVALCIVFIHIFFLHLHGS 196 Query: 115 S 113 + Sbjct: 197 T 197
>BCL6_HUMAN (P41182) B-cell lymphoma 6 protein (BCL-6) (Zinc finger protein 51)| (LAZ-3 protein) (BCL-5) (Zinc finger and BTB domain-containing protein 27) Length = 706 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/59 (23%), Positives = 25/59 (42%) Frame = +1 Query: 115 TAHTHVRKTNREKPYTYGQSQNKLEHTRTLQAAQHSTLSPCTNERMTYKIRKTNQKPQV 291 T +H+R EKPY + H L+ TN ++ Y++ T+ P++ Sbjct: 644 TLKSHLRIHTGEKPYHCEKCNLHFRHKSQLRLHLRQKHGAITNTKVQYRVSATDLPPEL 702 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,949,924 Number of Sequences: 219361 Number of extensions: 1171299 Number of successful extensions: 3076 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 2996 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3076 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 1391514312 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
