>ZFP62_HUMAN (Q8NB50) Zinc finger protein 62 homolog (Zfp-62)|
          Length = 694

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 12/23 (52%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = +3

Query: 336 SKSNRQRHQGIHL-EKPMRCAVC 401
           S+S+ + H+GIHL EKP +C+ C
Sbjct: 282 SRSSLKNHKGIHLGEKPYKCSYC 304

>ZN235_HUMAN (Q14590) Zinc finger protein 235 (Zinc finger protein 93 homolog)|
           (Zfp-93) (Zinc finger protein HZF6) (Fragment)
          Length = 209

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 327 GATSKSNRQRHQGIHL-EKPMRCAVC 401
           G +S S+ Q HQ +H  EKP RC VC
Sbjct: 40  GFSSASSFQSHQRVHTGEKPFRCNVC 65

>ZFP27_MOUSE (P10077) Zinc finger protein 27 (Zfp-27) (mKR4 protein)|
          Length = 819

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 15/24 (62%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +3

Query: 333 TSKSNRQRHQGIHL-EKPMRCAVC 401
           T KS  Q HQ IH  EKP RCA C
Sbjct: 747 TKKSQLQVHQRIHTGEKPYRCAEC 770

>GLP1R_HUMAN (P43220) Glucagon-like peptide 1 receptor precursor (GLP-1|
           receptor) (GLP-1-R) (GLP-1R)
          Length = 463

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 375 PDGYPGAAVDCSCWWHRHLLSLVHEGRQIQF 283
           PDG PG+ V+ SC W+    S V +G   +F
Sbjct: 73  PDGEPGSFVNVSCPWYLPWASSVPQGHVYRF 103

>YFJW_ECOLI (P52138) Hypothetical protein yfjW|
          Length = 567

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 11/33 (33%), Positives = 23/33 (69%)
 Frame = -2

Query: 224 LVNVVH*MYYRLLLSLFDCIVNIVFFPVISLRH 126
           L+N+++ ++  +LLSLF C+ N + F +  ++H
Sbjct: 127 LLNILYNLFGAILLSLFMCLSNSLLFHLNKIKH 159

>PSB3_CAEEL (Q23237) Proteasome subunit beta type 3 (EC 3.4.25.1) (Proteasome|
           subunit beta 3)
          Length = 204

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 122 DNSKEYISCQTTLGCVISIAAARDCIVTSQG 30
           D +K YI C  T+GCV   +A RD +    G
Sbjct: 114 DTNKPYICCMDTIGCV---SAPRDFVAVGTG 141

>PRDM1_MOUSE (Q60636) PR domain zinc finger protein 1 (PR domain-containing|
           protein 1) (Beta-interferon gene positive-regulatory
           domain I-binding factor) (BLIMP-1)
          Length = 856

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 315 TTDVGATSKSNRQRHQGIHL-EKPMRCAVCH 404
           T + G T  ++ Q+H  +H  EKP  C VCH
Sbjct: 638 TCNKGFTQLAHLQKHYLVHTGEKPHECQVCH 668

>GLP1R_RAT (P32301) Glucagon-like peptide 1 receptor precursor (GLP-1|
           receptor) (GLP-1-R) (GLP-1R)
          Length = 463

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 375 PDGYPGAAVDCSCWWHRHLLSLVHEGRQIQF 283
           PDG PG+ V+ SC W+    S V +G   +F
Sbjct: 73  PDGPPGSFVNVSCPWYLPWASSVLQGHVYRF 103

>CAD13_CHICK (P33150) Cadherin-13 precursor (Truncated-cadherin) (T-cadherin)|
           (T-cad)
          Length = 712

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +3

Query: 135 GYYRKKNYIDNTIEQTQQQPIVHLVYNIYQG 227
           G+ +K  YI+   E T+ QPI++LV++  +G
Sbjct: 30  GFQQKVFYIEQPFEFTEDQPILNLVFDDCKG 60

>ZN228_HUMAN (Q9UJU3) Zinc finger protein 228|
          Length = 913

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 327 GATSKSNRQRHQGIHL-EKPMRCAVC 401
           G + +SN Q HQ +H  EKP +C  C
Sbjct: 841 GFSQRSNLQAHQRVHTGEKPYKCDAC 866

>ZN227_HUMAN (Q86WZ6) Zinc finger protein 227|
          Length = 799

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +3

Query: 315 TTDVGATSKSNRQRHQGIHL-EKPMRCAVC 401
           T   G +  S  Q HQ +H  EKP RC VC
Sbjct: 524 TCGKGFSQSSKLQTHQRVHTGEKPYRCDVC 553

>PRDM1_HUMAN (O75626) PR domain zinc finger protein 1 (PR domain-containing|
           protein 1) (Beta-interferon gene positive-regulatory
           domain I-binding factor) (BLIMP-1) (Positive regulatory
           domain I-binding factor 1) (PRDI-binding factor 1)
           (PRDI-BF1)
          Length = 789

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 315 TTDVGATSKSNRQRHQGIHL-EKPMRCAVCH 404
           T + G T  ++ Q+H  +H  EKP  C VCH
Sbjct: 571 TCNKGFTQLAHLQKHYLVHTGEKPHECQVCH 601

>GLP1R_MOUSE (O35659) Glucagon-like peptide 1 receptor precursor (GLP-1|
           receptor) (GLP-1-R) (GLP-1R)
          Length = 489

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 375 PDGYPGAAVDCSCWWHRHLLSLVHEGRQIQF 283
           PDG PG+ V+ SC W+    S V +G   +F
Sbjct: 73  PDGPPGSFVNVSCPWYLPWASSVLQGHVYRF 103

>RECG_AQUAE (O67837) ATP-dependent DNA helicase recG (EC 3.6.1.-)|
          Length = 792

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/42 (28%), Positives = 26/42 (61%)
 Frame = +1

Query: 28  NPCEVTIQSLAAAIEITQPRVVWQEIYSFELSLWRKDITGKK 153
           NP ++++ +L +  ++   RV++ E++ F+L+L  K    KK
Sbjct: 296 NPKDISVNALNSFTDLYHKRVIYDELFLFQLALLLKKQEIKK 337

>BI54_MOUSE (P28664) Brain protein I54|
          Length = 130

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 8/77 (10%)
 Frame = -1

Query: 243 WFIRAGLGKCCTLNVLSV--------VVEFVRLYCQYSFFSCNILAPQRQFKGIYLLPDH 88
           WF+ + LG+ C L  L          ++EF   +    FF     AP+    G +     
Sbjct: 15  WFVGSALGRSCPLGFLGFHQPSLSLDILEFCGKFFSLEFFQLTACAPKEGVSGTHC---- 70

Query: 87  PRLCNFYSSGKRLYCDF 37
            R+ N + +     C F
Sbjct: 71  TRVKNLWINALNFVCLF 87

>ZN213_HUMAN (O14771) Zinc finger protein 213 (Putative transcription factor|
           CR53)
          Length = 459

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +3

Query: 321 DVGATSKSNRQRHQGIHL-EKPMRCAVC 401
           D    S S+  RHQG+H  EKP  C+ C
Sbjct: 351 DKSFRSSSDLVRHQGVHTGEKPFSCSEC 378

>NMDE3_HUMAN (Q14957) Glutamate [NMDA] receptor subunit epsilon 3 precursor|
           (N-methyl D-aspartate receptor subtype 2C) (NR2C)
           (NMDAR2C)
          Length = 1233

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -1

Query: 405 HGTLRTALASPDGYPGAAVDCSCWWHRHLLSLVHEGRQIQF 283
           HGTL         +PG        ++RHLL++  EGR   F
Sbjct: 307 HGTLPAPAGDCRVHPGPVSPAREAFYRHLLNVTWEGRDFSF 347

>HBD_BRAJA (Q45223) 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)|
           (Beta-hydroxybutyryl-CoA dehydrogenase) (BHBD)
          Length = 293

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 5   SIIISLYETLVKSQYNLLPLL*KLHSRGWSGKR 103
           SI+  L+E L  S+Y   PLL K    GW G++
Sbjct: 244 SIMQVLHEGLADSKYRPCPLLVKYVEAGWLGRK 276

>ZN484_HUMAN (Q5JVG2) Zinc finger protein 484|
          Length = 852

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/24 (58%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +3

Query: 333 TSKSNRQRHQGIHL-EKPMRCAVC 401
           T KS    HQ IH  EKP RCA C
Sbjct: 618 TKKSQLHVHQQIHTGEKPYRCAEC 641

>ZNF45_HUMAN (Q02386) Zinc finger protein 45 (BRC1744)|
          Length = 682

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +3

Query: 327 GATSKSNRQRHQGIHL-EKPMRCAVC 401
           G    SN   H+G+H  EKP RC VC
Sbjct: 564 GFCRASNFLAHRGVHTGEKPYRCDVC 589

>CPT1C_MOUSE (Q8BGD5) Carnitine O-palmitoyltransferase I, brain isoform (EC|
           2.3.1.21) (Carnitine palmitoyltransferase 1C) (CPT IC)
          Length = 798

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 43  TIQSLAAAIEITQPRVVWQEIYSFELSLWRKDI 141
           ++ S  A +E++ P  VWQEIY   L  W++ +
Sbjct: 13  SLSSDGAEVELSSP--VWQEIYLCALRSWKRHL 43

>Z297B_MOUSE (Q9DAI4) Zinc finger protein 297B|
          Length = 467

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +3

Query: 333 TSKSNRQRHQGIHLE-KPMRCAVC 401
           T KS R RH  +HL  +P  C+VC
Sbjct: 382 THKSQRDRHMSMHLGLRPYGCSVC 405

>PKD1_HUMAN (P98161) Polycystin-1 precursor (Autosomal dominant polycystic|
           kidney disease protein 1)
          Length = 4303

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = +2

Query: 191 TDSTFSVQHLPRPALMNHQFYLGSSTIDRPRNWI*RPSCTSDNR 322
           T + F  Q L RPA +  Q Y   ST   P N     S + DNR
Sbjct: 590 TTAEFGTQELRRPAQLRLQVYRLLSTAGTPENGSEPESRSPDNR 633


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,296,599
Number of Sequences: 219361
Number of extensions: 1410631
Number of successful extensions: 3866
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 3776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3866
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)