ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl31e05 |
|---|---|
| Clone Library Name | barley_pub |
>VGL2_EBV (P03218) Probable membrane glycoprotein| Length = 248 Score = 31.2 bits (69), Expect = 0.64 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 11/62 (17%) Frame = +1 Query: 52 ITQTIHHYRITSALIVPTKLQNITTLLSSEHHKRTI-----HDPI------*TPWQPLGS 198 +TQ +H I + I PT L + TT S H+R + H P+ PW+P + Sbjct: 147 LTQRMHLTVIPATTIAPTTLVSHTTSTSHRPHRRPVSKRPTHKPVTLGPFPIDPWRPKTT 206 Query: 199 WL 204 W+ Sbjct: 207 WV 208
>TRAB_RHISN (P55416) Probable conjugal transfer protein traB| Length = 387 Score = 30.4 bits (67), Expect = 1.1 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 3/70 (4%) Frame = +1 Query: 7 IGYRTPRIFTSWGTIITQTIHHYRITSALIVPTKLQNITTLLSSEHHKRTIHDPI*TP-- 180 +G+ TP W + T +A I T N+ LS++ + + + P Sbjct: 232 LGFWTPTFERLWVKALQGTEISVISGAAAIDATGYDNVLVTLSADGGRVLYRERMPVPGS 291 Query: 181 -WQPLGSWLG 207 WQP GSWLG Sbjct: 292 MWQPWGSWLG 301
>YNE1_CAEEL (P30640) Hypothetical protein R08D7.1| Length = 458 Score = 28.9 bits (63), Expect = 3.2 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Frame = -3 Query: 365 HDQDVAGDRAGRLTSRADGAPWVI*RDHRDPHDEDGDRYLQFRRDHD-EG*PAPPSQ 198 HD D + R R + +D +P R R+ HD D D RR HD + P PS+ Sbjct: 112 HDSDNSPPRPSRKRNDSDNSPP---RPSRNRHDSDKDNSPPRRRRHDSDNSPPRPSR 165
>YN53_CAEEL (P34587) Hypothetical protein ZC21.3| Length = 321 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +3 Query: 51 HNTDNTSLPNYVGSYCSYQTTKYYNTP 131 ++ D+ S + V S C YQT + YNTP Sbjct: 279 YSADSISCCSQVSSTCCYQTQQGYNTP 305
>HHAT_MOUSE (Q8BMT9) Protein-cysteine N-palmitoyltransferase HHAT (EC 2.3.1.-)| (Hedgehog acyltransferase) (Skinny hedgehog protein) Length = 499 Score = 28.5 bits (62), Expect = 4.1 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%) Frame = -2 Query: 189 WLPWGSNRVVYCSLMML*AEECCNIL*FGRNNKSRRNSVMMY----CLCYDGAPG 37 W+ WG R+V+ + + + +L K R VM+Y C C GAPG Sbjct: 63 WMEWGKRRLVWLFIGHMAVSQLATLL----TKKHRPWIVMVYGMWACWCVLGAPG 113
>CAPP_BORPA (Q7WCA9) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)| (PEPC) Length = 982 Score = 28.5 bits (62), Expect = 4.1 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Frame = +1 Query: 52 ITQTIHHYRITSALIVPTKLQNITTLLSSEHHKR-TIHDPI*TPWQPLGSWLGG 210 I + +YR T ++P ++ LL+ E K T P P+ +GSW+GG Sbjct: 245 IENALSYYRSTFLNVIPRVYGDLARLLNREPVKPFTPPPPPLEPFLRMGSWIGG 298
>CAPP_BORBR (Q7WQB3) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)| (PEPC) Length = 982 Score = 28.5 bits (62), Expect = 4.1 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Frame = +1 Query: 52 ITQTIHHYRITSALIVPTKLQNITTLLSSEHHKR-TIHDPI*TPWQPLGSWLGG 210 I + +YR T ++P ++ LL+ E K T P P+ +GSW+GG Sbjct: 245 IENALSYYRSTFLNVIPRVYGDLARLLNREPVKPFTPPPPPLEPFLRMGSWIGG 298
>CAPP_BORPE (Q7W0D0) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)| (PEPC) Length = 980 Score = 28.5 bits (62), Expect = 4.1 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Frame = +1 Query: 52 ITQTIHHYRITSALIVPTKLQNITTLLSSEHHKR-TIHDPI*TPWQPLGSWLGG 210 I + +YR T ++P ++ LL+ E K T P P+ +GSW+GG Sbjct: 245 IENALSYYRSTFLNVIPRVYGDLARLLNREPVKPFTPPPPPLEPFLRMGSWIGG 298
>STNB_DROME (Q24212) Protein stoned-B (StonedB) (Stn-B)| Length = 1262 Score = 28.1 bits (61), Expect = 5.4 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Frame = +2 Query: 149 REQYTTLFE-PHGNHWDPG*VAPVTLHRDLAETVGTGHRPRRE 274 +E +LFE PH P P LH DL ET+G G P +E Sbjct: 298 KEDILSLFEQPHVPLSQPA-SKPDLLHDDLDETIGEGEPPEQE 339
>MC6ZB_XENLA (Q7ZY18) Zygotic DNA replication licensing factor mcm6-B (Zygotic| minichromosome maintenance protein 6-B) (zMCM6-B) (zMCM6b) Length = 825 Score = 28.1 bits (61), Expect = 5.4 Identities = 15/43 (34%), Positives = 22/43 (51%) Frame = +2 Query: 59 RQYIITELRRLLLFLPNYKILQHSSAQSIIREQYTTLFEPHGN 187 R Y + E+RR LLF +K ++ I EQY L + G+ Sbjct: 566 RVYTLDEVRRYLLFARQFKPKISKESEDFIVEQYKRLRQRDGS 608
>TGB2_SHVX (Q04582) TGB2 protein (Triple gene block 2 protein) (TGBp2) (12 kDa| protein) (ORF 3 protein) Length = 103 Score = 28.1 bits (61), Expect = 5.4 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = +3 Query: 51 HNTDNTSLPNYVGSYCSYQTTKYYNTPQLRAS*ENNTRPYLNPMATT 191 H DNT + G YC Y+ P+ +S NN P++ +A T Sbjct: 36 HVGDNTHNLPHGGQYCDGNKRVLYSGPKSGSSPTNNLWPFITVIALT 82
>MCM6Z_XENTR (Q6P1V8) Zygotic DNA replication licensing factor mcm6 (Zygotic| minichromosome maintenance protein 6) (zMCM6) Length = 823 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = +2 Query: 59 RQYIITELRRLLLFLPNYKILQHSSAQSIIREQYTTLFEPHG 184 R Y + E+RR LLF +K ++ I EQY L + G Sbjct: 566 RVYTLDEVRRYLLFARQFKPKISKESEDFIVEQYKRLRQRDG 607
>CUS1_YEAST (Q02554) Protein CUS1| Length = 436 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/41 (26%), Positives = 22/41 (53%) Frame = +3 Query: 12 LQNPTYFYILGHHHNTDNTSLPNYVGSYCSYQTTKYYNTPQ 134 L+ Y I+ +HH+ NY G+ S++T ++ N+ + Sbjct: 340 LKGDVYGKIIPNHHSRSKKQGRNYFGALISFETPEFENSKE 380
>MC6ZA_XENLA (Q498J7) Zygotic DNA replication licensing factor mcm6-A (Zygotic| minichromosome maintenance protein 6-A) (zMCM6-A) (zMCM6a) Length = 823 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = +2 Query: 59 RQYIITELRRLLLFLPNYKILQHSSAQSIIREQYTTLFEPHGN 187 R Y + E+RR LLF +K + I EQY L + G+ Sbjct: 566 RVYTVDEVRRYLLFARQFKPKISKESADFIVEQYKRLRQRDGS 608
>Y072_NPVOP (O10325) Hypothetical 6.3 kDa protein (ORF75)| Length = 55 Score = 27.3 bits (59), Expect = 9.2 Identities = 10/15 (66%), Positives = 11/15 (73%) Frame = -3 Query: 275 PHDEDGDRYLQFRRD 231 P D DGDRYLQF + Sbjct: 31 PEDNDGDRYLQFNNN 45
>DBPA_ECOLI (P21693) ATP-independent RNA helicase dbpA (EC 3.6.1.-)| Length = 457 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/35 (42%), Positives = 18/35 (51%) Frame = +2 Query: 77 ELRRLLLFLPNYKILQHSSAQSIIREQYTTLFEPH 181 ELRRL FLPN KIL Q ++ + PH Sbjct: 90 ELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPH 124
>NMD3A_RAT (Q9R1M7) Glutamate [NMDA] receptor subunit 3A precursor| (N-methyl-D-aspartate receptor subtype 3A) (NR3A) (NMDAR-L) (NMDAR-L1) (N-methyl-D-aspartate receptor) (Chi-1) Length = 1135 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 4/34 (11%) Frame = +1 Query: 121 TTLLSSEHHK---RTIHDPI*TP-WQPLGSWLGG 210 +T++SSE++ HDP+ P W LGSW GG Sbjct: 454 STIISSENNFFIWNLQHDPMGKPMWTRLGSWQGG 487
>SYI_FRATT (Q5NGD0) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 935 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +1 Query: 49 IITQTIHHYRITSALIVPTKLQNITTLLSSEHHKRTIHDPI 171 ++ QT+ Y I +A I+ T N T + +EH + H PI Sbjct: 277 LVEQTLKRYAIENAQIIATTTGNKLTGIMAEHPFYSRHVPI 317 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,925,038 Number of Sequences: 219361 Number of extensions: 1157928 Number of successful extensions: 2796 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 2718 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2794 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 1402043640 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
