>TTF2_HUMAN (Q9UNY4) Transcription termination factor 2 (EC 3.6.1.-) (RNA|
            polymerase II termination factor) (Transcription release
            factor 2) (Factor 2) (F2) (HuF2) (Lodestar homolog)
          Length = 1162

 Score = 33.9 bits (76), Expect = 0.18
 Identities = 19/44 (43%), Positives = 26/44 (59%)
 Frame = -1

Query: 422  TVEDRILSLQEEKRAMVNSAFGEDKSSAHATRLTVDDLRYLFRI 291
            TVE++IL LQE+K+ +         S    T+LT+ DLR LF I
Sbjct: 1121 TVEEKILQLQEKKKDLAKQVL--SGSGESVTKLTLADLRVLFGI 1162

>TTF2_MOUSE (Q5NC05) Transcription termination factor 2 (EC 3.6.1.-) (RNA|
            polymerase II termination factor) (Transcription release
            factor 2)
          Length = 1184

 Score = 32.7 bits (73), Expect = 0.40
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = -1

Query: 422  TVEDRILSLQEEKRAMVNSAFGEDKSSAHATRLTVDDLRYLFRI 291
            TVE++IL LQE+K+ +         S    T+LT+ DL+ LF I
Sbjct: 1143 TVEEKILQLQEKKKDLAKQVL--SGSEGPVTKLTLADLKILFGI 1184

>TTF2_DROME (P34739) Transcription termination factor 2 (EC 3.6.1.-) (RNA|
            polymerase II termination factor) (Transcription release
            factor 2) (Protein lodestar)
          Length = 1061

 Score = 31.6 bits (70), Expect = 0.89
 Identities = 18/43 (41%), Positives = 26/43 (60%)
 Frame = -1

Query: 425  DTVEDRILSLQEEKRAMVNSAFGEDKSSAHATRLTVDDLRYLF 297
            DTVE RI  LQ++K  + +      K S+   +LT+DDL+ LF
Sbjct: 1020 DTVEQRIKGLQDKKLDLADGVLTGAKVSS---KLTIDDLKGLF 1059

>HDC_DROME (Q9N2M8) Headcase protein [Contains: Headcase short protein]|
          Length = 1080

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
 Frame = -1

Query: 284 GGGMIPCCVPSFGKC*SGDRLVIHVSLCPAVDSVL------SCSDRSYM 156
           GGGM+ CC+PS G C   D L IH++     D +       +CS   YM
Sbjct: 64  GGGMVHCCLPS-GDCRKLDTL-IHLNELSLADCIRVLCNNENCSAGQYM 110

>YH09_YEAST (P38892) Hypothetical 33.8 kDa protein in TWT1-FLO5 intergenic|
           region
          Length = 291

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 433 PLQIRWKTVFYLCRRK 386
           PL+I W T +YLCR++
Sbjct: 275 PLKIEWSTFYYLCRKR 290

>RAD5_CRYNE (Q5KPG8) DNA repair protein RAD5 (EC 3.6.1.-)|
          Length = 1198

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -1

Query: 431  ITDTVEDRILSLQEEKRAMVNSAFGEDKSSAHATRLTVDDLRYLF 297
            I  TVE RI+ +Q  K A+VN++     + A     T+ D++ +F
Sbjct: 1145 IKGTVEKRIMKIQRSKTALVNASL---SNGAKTKETTLADIKKIF 1186

>MCH1_CANAL (Q59MJ2) Probable transporter MCH1|
          Length = 436

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
 Frame = -2

Query: 277 G*YLVAFLALESVRVVTGLSSM------SLSALPWIQFCHVPIGPTCDIRGPASYSMSSV 116
           G  L+  L   S   V GLS +      SLSAL  + FC   +G   D  GPA  S+ S+
Sbjct: 41  GSILLFTLYTSSFHEVLGLSYLQINMISSLSALG-MYFCLPVLGYLADSYGPALLSLFSI 99

Query: 115 TYLCSS 98
            + C S
Sbjct: 100 WFFCPS 105


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,288,174
Number of Sequences: 219361
Number of extensions: 1327320
Number of successful extensions: 3087
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3087
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)