ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl31e02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_507149.1| PREDICTED Oryza sativa (japonica cultivar-group... 161 2e-36
2ref|XM_480373.1| Oryza sativa (japonica cultivar-group), mRNA 161 2e-36
3dbj|AK100130.1| Oryza sativa (japonica cultivar-group) cDNA clon... 161 2e-36
4dbj|AK070470.1| Oryza sativa (japonica cultivar-group) cDNA clon... 161 2e-36
5dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
6dbj|AP004692.2| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
7ref|XM_473992.1| Oryza sativa (japonica cultivar-group), predic... 48 0.024
8dbj|AK102284.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.024
9gb|AF065411.1|AF065411 Methanobacterium phage psiM2, complete ge... 44 0.38
10emb|BX323553.3| Zebrafish DNA sequence from clone CH211-218C8 in... 44 0.38
11gb|AC167247.2| Mus musculus BAC clone RP23-418C19 from chromosom... 40 5.9
12gb|AC150993.4| Bos taurus BAC CH240-186K21 (Children's Hospital... 40 5.9
13gb|AC126055.4| Mus musculus BAC clone RP23-368O6 from chromosome... 40 5.9
14emb|AL358875.13| Human DNA sequence from clone RP11-312H18 on ch... 40 5.9
15gb|AC175490.2| Mus musculus chromosome 5, clone wi1-959E1, compl... 40 5.9
16gb|AF509744.1| Hordeum vulgare subsp. vulgare Morex receptor-lik... 40 5.9
17gb|AC087413.5| Homo sapiens BAC clone RP11-680J17 from 4, comple... 40 5.9
18gb|AC148664.1| Macaca mulatta Major Histocompatibility Complex B... 40 5.9
19gb|AC148660.1| Macaca mulatta Major Histocompatibility Complex B... 40 5.9
20gb|AC158597.7| Mus musculus 10 BAC RP24-216E13 (Roswell Park Can... 40 5.9
21gb|AC155714.6| Mus musculus 10 BAC RP24-165I13 (Roswell Park Can... 40 5.9
22gb|AY111583.1| Zea mays CL2978_1 mRNA sequence 40 5.9
23gb|DQ282559.1| Anaplasma marginale str. Florida OMP8 gene, compl... 40 5.9
24emb|AL845498.9| Mouse DNA sequence from clone RP23-222D20 on chr... 40 5.9 
>ref|XM_507149.1| PREDICTED Oryza sativa (japonica cultivar-group), P0455A11.14 mRNA
          Length = 4156

 Score =  161 bits (81), Expect = 2e-36
 Identities = 135/153 (88%)
 Strand = Plus / Minus

                                                                        
Query: 284  ccaatcatatcctaaacagatacctcagatcatctacagtgagccgggtagcgtgggcac 343
            ||||||| | |||||| |||||| |||||||||| || |||||||| || |||||| |||
Sbjct: 3875 ccaatcaaaacctaaatagatacttcagatcatccacggtgagccgagtcgcgtggccac 3816

                                                                        
Query: 344  tggatttgtcttcaccaaaagcagagttgaccatggctctcttttcctcctgcagagata 403
              ||||||||||| |||||||||||| | |||||||||||||||||||||||||||| ||
Sbjct: 3815 ccgatttgtcttcgccaaaagcagagctaaccatggctctcttttcctcctgcagagcta 3756

                                             
Query: 404  aaatacggtcttccaccgtatctgtaatggtta 436
            |||| || ||||||||||||||| |||||||||
Sbjct: 3755 aaatgcgatcttccaccgtatctttaatggtta 3723
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>ref|XM_480373.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3844

 Score =  161 bits (81), Expect = 2e-36
 Identities = 135/153 (88%)
 Strand = Plus / Minus

                                                                        
Query: 284  ccaatcatatcctaaacagatacctcagatcatctacagtgagccgggtagcgtgggcac 343
            ||||||| | |||||| |||||| |||||||||| || |||||||| || |||||| |||
Sbjct: 3548 ccaatcaaaacctaaatagatacttcagatcatccacggtgagccgagtcgcgtggccac 3489

                                                                        
Query: 344  tggatttgtcttcaccaaaagcagagttgaccatggctctcttttcctcctgcagagata 403
              ||||||||||| |||||||||||| | |||||||||||||||||||||||||||| ||
Sbjct: 3488 ccgatttgtcttcgccaaaagcagagctaaccatggctctcttttcctcctgcagagcta 3429

                                             
Query: 404  aaatacggtcttccaccgtatctgtaatggtta 436
            |||| || ||||||||||||||| |||||||||
Sbjct: 3428 aaatgcgatcttccaccgtatctttaatggtta 3396
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>dbj|AK100130.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009O07, full
            insert sequence
          Length = 3844

 Score =  161 bits (81), Expect = 2e-36
 Identities = 135/153 (88%)
 Strand = Plus / Minus

                                                                        
Query: 284  ccaatcatatcctaaacagatacctcagatcatctacagtgagccgggtagcgtgggcac 343
            ||||||| | |||||| |||||| |||||||||| || |||||||| || |||||| |||
Sbjct: 3548 ccaatcaaaacctaaatagatacttcagatcatccacggtgagccgagtcgcgtggccac 3489

                                                                        
Query: 344  tggatttgtcttcaccaaaagcagagttgaccatggctctcttttcctcctgcagagata 403
              ||||||||||| |||||||||||| | |||||||||||||||||||||||||||| ||
Sbjct: 3488 ccgatttgtcttcgccaaaagcagagctaaccatggctctcttttcctcctgcagagcta 3429

                                             
Query: 404  aaatacggtcttccaccgtatctgtaatggtta 436
            |||| || ||||||||||||||| |||||||||
Sbjct: 3428 aaatgcgatcttccaccgtatctttaatggtta 3396
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>dbj|AK070470.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054E15, full
            insert sequence
          Length = 4155

 Score =  161 bits (81), Expect = 2e-36
 Identities = 135/153 (88%)
 Strand = Plus / Minus

                                                                        
Query: 284  ccaatcatatcctaaacagatacctcagatcatctacagtgagccgggtagcgtgggcac 343
            ||||||| | |||||| |||||| |||||||||| || |||||||| || |||||| |||
Sbjct: 3874 ccaatcaaaacctaaatagatacttcagatcatccacggtgagccgagtcgcgtggccac 3815

                                                                        
Query: 344  tggatttgtcttcaccaaaagcagagttgaccatggctctcttttcctcctgcagagata 403
              ||||||||||| |||||||||||| | |||||||||||||||||||||||||||| ||
Sbjct: 3814 ccgatttgtcttcgccaaaagcagagctaaccatggctctcttttcctcctgcagagcta 3755

                                             
Query: 404  aaatacggtcttccaccgtatctgtaatggtta 436
            |||| || ||||||||||||||| |||||||||
Sbjct: 3754 aaatgcgatcttccaccgtatctttaatggtta 3722
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  111 bits (56), Expect = 2e-21
 Identities = 98/112 (87%)
 Strand = Plus / Minus

                                                                           
Query: 284     ccaatcatatcctaaacagatacctcagatcatctacagtgagccgggtagcgtgggcac 343
               ||||||| | |||||| |||||| |||||||||| || |||||||| || |||||| |||
Sbjct: 4701714 ccaatcaaaacctaaatagatacttcagatcatccacggtgagccgagtcgcgtggccac 4701655

                                                                   
Query: 344     tggatttgtcttcaccaaaagcagagttgaccatggctctcttttcctcctg 395
                 ||||||||||| |||||||||||| | |||||||||||||||||||||||
Sbjct: 4701654 ccgatttgtcttcgccaaaagcagagctaaccatggctctcttttcctcctg 4701603



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                            
Query: 392     cctgcagagataaaatacggtcttccaccgtatctgtaatggtta 436
               ||||||||| |||||| || ||||||||||||||| |||||||||
Sbjct: 4701122 cctgcagagctaaaatgcgatcttccaccgtatctttaatggtta 4701078
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>dbj|AP004692.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0455A11
          Length = 158629

 Score =  111 bits (56), Expect = 2e-21
 Identities = 98/112 (87%)
 Strand = Plus / Minus

                                                                         
Query: 284   ccaatcatatcctaaacagatacctcagatcatctacagtgagccgggtagcgtgggcac 343
             ||||||| | |||||| |||||| |||||||||| || |||||||| || |||||| |||
Sbjct: 59730 ccaatcaaaacctaaatagatacttcagatcatccacggtgagccgagtcgcgtggccac 59671

                                                                 
Query: 344   tggatttgtcttcaccaaaagcagagttgaccatggctctcttttcctcctg 395
               ||||||||||| |||||||||||| | |||||||||||||||||||||||
Sbjct: 59670 ccgatttgtcttcgccaaaagcagagctaaccatggctctcttttcctcctg 59619



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                          
Query: 392   cctgcagagataaaatacggtcttccaccgtatctgtaatggtta 436
             ||||||||| |||||| || ||||||||||||||| |||||||||
Sbjct: 59138 cctgcagagctaaaatgcgatcttccaccgtatctttaatggtta 59094
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>ref|XM_473992.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3156

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 60/72 (83%)
 Strand = Plus / Minus

                                                                        
Query: 348  tttgtcttcaccaaaagcagagttgaccatggctctcttttcctcctgcagagataaaat 407
            |||||| |||||||||||||| | ||||||   |||||| | |||||| |||| ||||||
Sbjct: 3096 tttgtcctcaccaaaagcagattggaccatctttctcttcttctcctgtagagctaaaat 3037

                        
Query: 408  acggtcttccac 419
             || ||||||||
Sbjct: 3036 ccgatcttccac 3025
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>dbj|AK102284.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033089H07, full
            insert sequence
          Length = 3801

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 60/72 (83%)
 Strand = Plus / Minus

                                                                        
Query: 348  tttgtcttcaccaaaagcagagttgaccatggctctcttttcctcctgcagagataaaat 407
            |||||| |||||||||||||| | ||||||   |||||| | |||||| |||| ||||||
Sbjct: 3421 tttgtcctcaccaaaagcagattggaccatctttctcttcttctcctgtagagctaaaat 3362

                        
Query: 408  acggtcttccac 419
             || ||||||||
Sbjct: 3361 ccgatcttccac 3350
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>gb|AF065411.1|AF065411 Methanobacterium phage psiM2, complete genome
          Length = 26111

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 279  tcctcccaatcatatcctaaacagat 304
            |||||||||||||||||| |||||||
Sbjct: 7889 tcctcccaatcatatcctcaacagat 7864
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>emb|BX323553.3| Zebrafish DNA sequence from clone CH211-218C8 in linkage group 2,
             complete sequence
          Length = 94088

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 1     gagtcaatgacacaatatacat 22
             ||||||||||||||||||||||
Sbjct: 73846 gagtcaatgacacaatatacat 73825
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>gb|AC167247.2| Mus musculus BAC clone RP23-418C19 from chromosome 17, complete
             sequence
          Length = 185234

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 385   ttttcctcctgcagagataaaata 408
             |||||||||||||| |||||||||
Sbjct: 65240 ttttcctcctgcagtgataaaata 65217
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>gb|AC150993.4| Bos taurus  BAC CH240-186K21 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 182043

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 57     cagagtacacaagaattctc 76
              ||||||||||||||||||||
Sbjct: 181015 cagagtacacaagaattctc 181034
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>gb|AC126055.4| Mus musculus BAC clone RP23-368O6 from chromosome 16, complete sequence
          Length = 197096

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 201    gcagagagagacatggatga 220
              ||||||||||||||||||||
Sbjct: 127060 gcagagagagacatggatga 127041
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>emb|AL358875.13| Human DNA sequence from clone RP11-312H18 on chromosome 1, complete
              sequence
          Length = 171635

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 143    tcctctgatgtcacatgtag 162
              ||||||||||||||||||||
Sbjct: 101715 tcctctgatgtcacatgtag 101734
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>gb|AC175490.2| Mus musculus chromosome 5, clone wi1-959E1, complete sequence
          Length = 41880

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 385  ttttcctcctgcagagataaaata 408
            |||||||||||||| |||||||||
Sbjct: 4063 ttttcctcctgcagtgataaaata 4086
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>gb|AF509744.1| Hordeum vulgare subsp. vulgare Morex receptor-like kinase gene,
            complete cds
          Length = 4643

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 110  gtaagttacactagacatgc 129
            ||||||||||||||||||||
Sbjct: 3760 gtaagttacactagacatgc 3741
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>gb|AC087413.5| Homo sapiens BAC clone RP11-680J17 from 4, complete sequence
          Length = 80701

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 101  agaacataagtaagttacac 120
            ||||||||||||||||||||
Sbjct: 2599 agaacataagtaagttacac 2618
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>gb|AC148664.1| Macaca mulatta Major Histocompatibility Complex BAC MMU021E24, complete
             sequence
          Length = 189424

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 234   actctaacactttccaaagc 253
             ||||||||||||||||||||
Sbjct: 63824 actctaacactttccaaagc 63843
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>gb|AC148660.1| Macaca mulatta Major Histocompatibility Complex BAC MMU007F01, complete
              sequence
          Length = 176267

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 234    actctaacactttccaaagc 253
              ||||||||||||||||||||
Sbjct: 130682 actctaacactttccaaagc 130701
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>gb|AC158597.7| Mus musculus 10 BAC RP24-216E13 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 167526

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 175    catgacaaaactgaatccac 194
              ||||||||||||||||||||
Sbjct: 117290 catgacaaaactgaatccac 117309
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>gb|AC155714.6| Mus musculus 10 BAC RP24-165I13 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 167195

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 175   catgacaaaactgaatccac 194
             ||||||||||||||||||||
Sbjct: 18047 catgacaaaactgaatccac 18066
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>gb|AY111583.1| Zea mays CL2978_1 mRNA sequence
          Length = 486

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 74/92 (80%)
 Strand = Plus / Plus

                                                                       
Query: 280 cctcccaatcatatcctaaacagatacctcagatcatctacagtgagccgggtagcgtgg 339
           |||| ||||||||||||||| || |||| ||| || || || | ||||||||| || |||
Sbjct: 391 cctcgcaatcatatcctaaataggtaccgcaggtcttccacggggagccgggtcgcatgg 450

                                           
Query: 340 gcactggatttgtcttcaccaaaagcagagtt 371
            | | || |||| | ||||| |||||||||||
Sbjct: 451 ccgccggctttggcatcaccgaaagcagagtt 482
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>gb|DQ282559.1| Anaplasma marginale str. Florida OMP8 gene, complete cds
          Length = 1209

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 268 ggtatcatccctcctcccaa 287
           ||||||||||||||||||||
Sbjct: 693 ggtatcatccctcctcccaa 674
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>emb|AL845498.9| Mouse DNA sequence from clone RP23-222D20 on chromosome 2, complete
              sequence
          Length = 154935

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 299    acagatacctcagatcatct 318
              ||||||||||||||||||||
Sbjct: 100488 acagatacctcagatcatct 100507


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,295,451
Number of Sequences: 3902068
Number of extensions: 4295451
Number of successful extensions: 76318
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76216
Number of HSP's gapped (non-prelim): 102
length of query: 437
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 415
effective length of database: 17,147,199,772
effective search space: 7116087905380
effective search space used: 7116087905380
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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