>PPZ_SCHPO (P78968) Serine/threonine-protein phosphatase PP-Z (EC 3.1.3.16)|
          Length = 515

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 205 NQGMATTFPL*QPSTRKPGSGALMHHHNQT*HASSHGVKPSYSASLTS 348
           +Q   +  P  QP+   P + A  HHH+ +  +SS+ V P+   S TS
Sbjct: 96  SQSPTSPHPSNQPAMLSPSTAASQHHHHHS-SSSSYAVSPTSPTSPTS 142

>L_EBOSM (Q66802) Large structural protein (L protein) (Transcriptase)|
            (Replicase) [Includes: RNA-directed RNA polymerase (EC
            2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC
            2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)]
          Length = 2210

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +3

Query: 45   SAFMFPVPFDSRVPTSHQKQTDSTLHGSSS*QSGTMYAVWFSWQRNRI 188
            S +  P    S +P +H+ + +  L+ S+S  +   +  WFS Q+NRI
Sbjct: 1867 SGYTTPRMLLSVMPRTHRGELEVILNNSASQITDITHRDWFSNQKNRI 1914

>DPOA2_YEAST (P38121) DNA polymerase alpha subunit B (P86 subunit)|
          Length = 705

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +3

Query: 24  SQNKLEFSAFMFPVPFDSRVPTSHQKQTDSTLHGSSS*QSGT 149
           S  KLEF+  M         P SH K +D+   GSS+ Q+ T
Sbjct: 146 SSLKLEFTPGMAEDAVGDSAPLSHAKSSDAKTPGSSTFQTPT 187

>POL_HV2RO (P04584) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1463

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +3

Query: 78  RVPTSHQKQTDSTLHGSSS*QSGTMYAVWFSWQRNRIELLQEEPR 212
           R P+S    T+ST  GSSS  +G +YA     +R   E +Q   R
Sbjct: 446 RGPSSAGADTNSTPSGSSSGSTGEIYAAREKTERAERETIQGSDR 490


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,035,816
Number of Sequences: 219361
Number of extensions: 1016347
Number of successful extensions: 2233
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2233
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 1375720320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)