ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl31e01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC147570.3| Homo sapiens BAC clone RP11-1176F21 from UL, complete sequence Length = 191237 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 91 cacaccaaaaacaaactgatag 112 |||||||||||||||||||||| Sbjct: 2226 cacaccaaaaacaaactgatag 2247
>gb|AC124814.10| Mus musculus chromosome 1, clone RP24-119P5, complete sequence Length = 162020 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 12 tcaataaaaatatctcaaaaca 33 |||||||||||||||||||||| Sbjct: 88204 tcaataaaaatatctcaaaaca 88183
>gb|AC004527.2|AC004527 Homo sapiens chromosome 21, Neurofibromatosis 1 (NF1) related locus, complete sequence Length = 131971 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 91 cacaccaaaaacaaactgatag 112 |||||||||||||||||||||| Sbjct: 94121 cacaccaaaaacaaactgatag 94100
>dbj|AP001660.1| Homo sapiens genomic DNA, chromosome 21q, section 4/105 Length = 340000 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 91 cacaccaaaaacaaactgatag 112 |||||||||||||||||||||| Sbjct: 17742 cacaccaaaaacaaactgatag 17721
>gb|AY898799.1| Homo sapiens NF1-ch21 pseudogene, complete sequence Length = 10837 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 91 cacaccaaaaacaaactgatag 112 |||||||||||||||||||||| Sbjct: 2583 cacaccaaaaacaaactgatag 2562
>gb|AY898798.1| Homo sapiens NF1-ch18 pseudogene, complete sequence Length = 10834 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 91 cacaccaaaaacaaactgatag 112 |||||||||||||||||||||| Sbjct: 2577 cacaccaaaaacaaactgatag 2556
>dbj|AP001634.1| Homo sapiens genomic DNA, chromosome 21q11.1 clone:B585O4, D21S290-LL56 region, complete sequence Length = 71829 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 91 cacaccaaaaacaaactgatag 112 |||||||||||||||||||||| Sbjct: 33976 cacaccaaaaacaaactgatag 33955
>dbj|AP001004.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-681B3, complete sequence Length = 182424 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 91 cacaccaaaaacaaactgatag 112 |||||||||||||||||||||| Sbjct: 97775 cacaccaaaaacaaactgatag 97796
>gb|AC008194.9| Drosophila melanogaster clone BACR49A05, complete sequence Length = 181437 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 24 tctcaaaacaaattagaattc 44 ||||||||||||||||||||| Sbjct: 64814 tctcaaaacaaattagaattc 64794
>emb|BX897699.1| Bartonella henselae strain Houston-1, complete genome Length = 1931047 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 23 atctcaaaacaaattagaatt 43 ||||||||||||||||||||| Sbjct: 337876 atctcaaaacaaattagaatt 337856
>emb|AJ428413.1|CFE428413 Calycanthus fertilis var. ferax complete chloroplast genome Length = 153337 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 7 aaagatcaataaaaatatctc 27 ||||||||||||||||||||| Sbjct: 33648 aaagatcaataaaaatatctc 33628
>gb|AC159280.2| Mus musculus BAC clone RP23-347A2 from chromosome 13, complete sequence Length = 200540 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 7 aaagatcaataaaaatatctcaaaa 31 |||||||||||||||||||| |||| Sbjct: 136696 aaagatcaataaaaatatctgaaaa 136720
>dbj|AB210410.1| Ciona intestinalis mRNA for transcription factor protein, complete cds, clone: cima830h02 Length = 3580 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 aataaaaatatctcaaaacaa 34 ||||||||||||||||||||| Sbjct: 3450 aataaaaatatctcaaaacaa 3430
>dbj|AK174829.1| Ciona intestinalis cDNA, clone:cilv086j22, full insert sequence Length = 2998 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 aataaaaatatctcaaaacaa 34 ||||||||||||||||||||| Sbjct: 2871 aataaaaatatctcaaaacaa 2851
>gb|AE003511.4| Drosophila melanogaster chromosome X, section 63 of 74 of the complete sequence Length = 297969 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 24 tctcaaaacaaattagaattc 44 ||||||||||||||||||||| Sbjct: 53196 tctcaaaacaaattagaattc 53176
>gb|AC174830.3| Myotis lucifugus clone CH235-234J19, complete sequence Length = 196835 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 11 atcaataaaaatatctcaaaacaa 34 |||||||||||||| ||||||||| Sbjct: 100807 atcaataaaaatatatcaaaacaa 100830
>emb|AL589908.4| Human DNA sequence from clone RP11-258M3 on chromosome 6, complete sequence Length = 13135 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 tgccaacatcacaccaaaaa 101 |||||||||||||||||||| Sbjct: 2445 tgccaacatcacaccaaaaa 2464
>emb|AL157713.10| Human DNA sequence from clone RP11-110J1 on chromosome 1q23.3-24.3 Contains the ETV3 gene for ets variant gene 3, a cytochrome c somatic pseudogene (HCP2), a ets variant gene 3 (ETV3) pseudogene, a keratin 8 (KRT8) pseudogene, a smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans) (SMU1) pseudogene, the 5' end of the ARHGEF11 gene for Rho guanine nucleotide exchange factor (GEF) 11 and two CPG islands, complete sequence Length = 167292 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 aaatatctcaaaacaaatta 38 |||||||||||||||||||| Sbjct: 119073 aaatatctcaaaacaaatta 119092
>emb|AL121919.20|HSJ492J12 Human DNA sequence from clone RP3-492J12 on chromosome 20 Contains the C20orf174 gene for chromosome 20 open reading frame 174 and a CpG island, complete sequence Length = 129942 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 acaggaagaaccaaggaatg 216 |||||||||||||||||||| Sbjct: 95346 acaggaagaaccaaggaatg 95327
>gb|AC124157.4| Equus caballus clone CH241-37P10, complete sequence Length = 193986 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 ggcaaaggaataggatagaa 191 |||||||||||||||||||| Sbjct: 95592 ggcaaaggaataggatagaa 95611
>gb|AC123525.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0056E15, complete sequence Length = 147941 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 ataaagatcaataaaaatat 24 |||||||||||||||||||| Sbjct: 38000 ataaagatcaataaaaatat 37981
>emb|BX066114.1|CNS09N6E Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC5BB10 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 880 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 aaaaatatctcaaaacaaat 36 |||||||||||||||||||| Sbjct: 59 aaaaatatctcaaaacaaat 40
>emb|BX061704.1|CNS09JRW Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC42CF07 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 917 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 aaaaatatctcaaaacaaat 36 |||||||||||||||||||| Sbjct: 817 aaaaatatctcaaaacaaat 836
>emb|BX055686.1|CNS09F4Q Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC34BF03 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 995 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 aaaaatatctcaaaacaaat 36 |||||||||||||||||||| Sbjct: 67 aaaaatatctcaaaacaaat 48
>emb|BX044330.1|CNS096DA Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC17DE04 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 892 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 aaaaatatctcaaaacaaat 36 |||||||||||||||||||| Sbjct: 805 aaaaatatctcaaaacaaat 824
>emb|BX036289.1|CNS0905X Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA8AC08 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 791 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 aaaaatatctcaaaacaaat 36 |||||||||||||||||||| Sbjct: 64 aaaaatatctcaaaacaaat 45
>emb|BX028385.1|CNS08U2D Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA42BF08 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 947 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 aaaaatatctcaaaacaaat 36 |||||||||||||||||||| Sbjct: 73 aaaaatatctcaaaacaaat 54
>emb|BX014177.1|CNS08J3P Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA21BB01 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 761 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 aaaaatatctcaaaacaaat 36 |||||||||||||||||||| Sbjct: 49 aaaaatatctcaaaacaaat 30
>emb|BX010892.1|CNS08GKG Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA17BG08 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 464 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 aaaaatatctcaaaacaaat 36 |||||||||||||||||||| Sbjct: 64 aaaaatatctcaaaacaaat 45
>emb|BX006520.1|CNS08D70 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA11AB02 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 689 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 aaaaatatctcaaaacaaat 36 |||||||||||||||||||| Sbjct: 71 aaaaatatctcaaaacaaat 52
>emb|BX842644.1| Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 3/4 Length = 349402 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 taaaaatatctcaaaacaaa 35 |||||||||||||||||||| Sbjct: 197309 taaaaatatctcaaaacaaa 197290
>emb|AL606633.3|OSJN00060 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010H02, complete sequence Length = 173522 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 tcaaaacaaattagaattct 45 |||||||||||||||||||| Sbjct: 158800 tcaaaacaaattagaattct 158781
>gb|AC011399.6| Homo sapiens chromosome 5 clone CTB-25P15, complete sequence Length = 174158 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 ggcaaaggaataggatagaa 191 |||||||||||||||||||| Sbjct: 72880 ggcaaaggaataggatagaa 72861
>gb|AC107943.4| Homo sapiens chromosome 8, clone RP11-11I1, complete sequence Length = 195110 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 atgcatcatcataaccagac 293 |||||||||||||||||||| Sbjct: 143504 atgcatcatcataaccagac 143485
>dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026 Length = 2324132 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 tcatggcaaaggaataggat 187 |||||||||||||||||||| Sbjct: 1782058 tcatggcaaaggaataggat 1782077
>gb|AC011835.8| Homo sapiens chromosome 8, clone RP11-143D15, complete sequence Length = 182151 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 atgcatcatcataaccagac 293 |||||||||||||||||||| Sbjct: 175085 atgcatcatcataaccagac 175104
>gb|AC016065.14| Homo sapiens chromosome 8, clone RP11-115C21, complete sequence Length = 185463 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 atgcatcatcataaccagac 293 |||||||||||||||||||| Sbjct: 149691 atgcatcatcataaccagac 149710
>gb|AC152502.5| Mus musculus BAC clone RP23-415D12 from chromosome 16, complete sequence Length = 180876 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 agaaccaaggaatggcaaca 222 |||||||||||||||||||| Sbjct: 66984 agaaccaaggaatggcaaca 66965
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 tcaaaacaaattagaattct 45 |||||||||||||||||||| Sbjct: 27728174 tcaaaacaaattagaattct 27728155
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 ataaagatcaataaaaatat 24 |||||||||||||||||||| Sbjct: 1352615 ataaagatcaataaaaatat 1352634
>dbj|BS000032.1| Pan troglodytes chromosome 22 clone:RP43-047I19, map 22, complete sequences Length = 166625 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 10 gatcaataaaaatatctcaaaaca 33 ||||||||||||||| |||||||| Sbjct: 22044 gatcaataaaaatatatcaaaaca 22067
>dbj|BS000031.1| Pan troglodytes chromosome 22 clone:PTB-082B23, map 22, complete sequences Length = 218696 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 10 gatcaataaaaatatctcaaaaca 33 ||||||||||||||| |||||||| Sbjct: 165875 gatcaataaaaatatatcaaaaca 165898
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 ataaagatcaataaaaatat 24 |||||||||||||||||||| Sbjct: 1350336 ataaagatcaataaaaatat 1350355
>emb|AL935192.10| Zebrafish DNA sequence from clone CH211-252B2, complete sequence Length = 192649 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 aaaacaaattagaattctcc 47 |||||||||||||||||||| Sbjct: 111675 aaaacaaattagaattctcc 111694
>gb|AC002525.1|AC002525 Human PAC clone 257C22A from 13q12-q13, complete sequence Length = 140942 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 gacatgcttcctcgcatggt 315 |||||||||||||||||||| Sbjct: 62021 gacatgcttcctcgcatggt 62040
>gb|DP000020.1| Equus caballus target 1 genomic scaffold Length = 1907055 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 ggcaaaggaataggatagaa 191 |||||||||||||||||||| Sbjct: 928595 ggcaaaggaataggatagaa 928614 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,807,801 Number of Sequences: 3902068 Number of extensions: 3807801 Number of successful extensions: 80891 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 80711 Number of HSP's gapped (non-prelim): 180 length of query: 392 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 370 effective length of database: 17,147,199,772 effective search space: 6344463915640 effective search space used: 6344463915640 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
