ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl31d03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
2dbj|AK068842.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
3dbj|AK060713.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
4emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4,... 56 1e-04
5emb|Z69721.1|HSU201H11 Human DNA sequence from clone LL0XNC01-20... 44 0.38
6gb|AC053523.5| Homo sapiens BAC clone RP11-563J6 from 2, complet... 44 0.38
7gb|AC005879.3|AC005879 citb_287_c_20, complete sequence 44 0.38
8emb|AL772205.12| Mouse DNA sequence from clone RP23-162C3 on chr... 44 0.38
9gb|AC130843.3| Mus musculus BAC clone RP24-501N9 from chromosome... 42 1.5
10gb|AC115721.11| Mus musculus chromosome 3, clone RP23-9P8, compl... 42 1.5
11gb|AC073332.13| Homo sapiens BAC clone RP11-435M6 from 7, comple... 42 1.5
12gb|AC160549.5| Mus musculus chromosome 3, clone RP23-276K18, com... 42 1.5
13gb|CP000107.1| Ehrlichia canis str. Jake, complete genome 42 1.5
14emb|AL160175.5| Human DNA sequence from clone RP11-243J16 on chr... 42 1.5
15ref|XM_693513.1| PREDICTED: Danio rerio similar to PI-3-kinase-r... 42 1.5
16ref|XM_693217.1| PREDICTED: Danio rerio similar to PI-3-kinase-r... 42 1.5
17emb|BX323078.8| Zebrafish DNA sequence from clone DKEYP-55A5 in ... 42 1.5
18emb|BX004999.8| Zebrafish DNA sequence from clone DKEY-66I24 in ... 42 1.5
19gb|AY996787.1| Cunninghamella elegans unknown mRNA 42 1.5
20gb|AC009962.11| Homo sapiens BAC clone RP11-366L5 from 2, comple... 42 1.5
21gb|AC017083.7| Homo sapiens BAC clone RP11-474G23 from 2, comple... 42 1.5
22gb|AC154593.2| Mus musculus BAC clone RP23-350J12 from chromosom... 40 5.9
23gb|AC113448.14| Mus musculus chromosome 15, clone RP23-1N23, com... 40 5.9
24gb|BC070806.1| Xenopus laevis hypothetical protein MGC83879, mRN... 40 5.9
25gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.9
26gb|AC126674.3| Mus musculus BAC clone RP23-364B6 from chromosome... 40 5.9
27ref|XM_729807.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 5.9
28gb|AC141323.9| Medicago truncatula clone mth2-6a23, complete seq... 40 5.9
29gb|AC149805.12| Medicago truncatula clone mth2-146o17, complete ... 40 5.9
30emb|CR352342.9| Zebrafish DNA sequence from clone CH211-134H7 in... 40 5.9
31emb|AL356093.20| Human DNA sequence from clone RP11-382K22 on ch... 40 5.9
32gb|AC145480.2| Genomic sequence for Oryza sativa, Nipponbare str... 40 5.9
33emb|AL157813.11| Human DNA sequence from clone RP11-165D7 on chr... 40 5.9
34emb|AL034369.1|HSA149D17 Human DNA sequence from clone RP6-149D1... 40 5.9
35gb|AC160461.3| Mus musculus chromosome 15, clone RP23-174B9, com... 40 5.9
36emb|X97751.1|SCIV23 S.cerevisiae chrIV genes STE7, CLB3, MSH5, R... 40 5.9
37emb|AL080283.1|ATF3L17 Arabidopsis thaliana DNA chromosome 4, BA... 40 5.9
38emb|AL161579.2|ATCHRIV75 Arabidopsis thaliana DNA chromosome 4, ... 40 5.9
39emb|BX511171.13| Zebrafish DNA sequence from clone DKEY-264K15 i... 40 5.9
40gb|AC097381.3| Homo sapiens BAC clone RP11-338K13 from 4, comple... 40 5.9
41gb|AC113370.2| Homo sapiens chromosome 5 clone RP11-124O5, compl... 40 5.9
42gb|AC007537.3| Homo sapiens 12 BAC RPCI11-267J23 (Roswell Park C... 40 5.9
43gb|AC022387.8| Homo sapiens chromosome 10 clone RP11-111N20, com... 40 5.9
44gb|AC093294.3| Homo sapiens chromosome 5 clone RP11-524C16, comp... 40 5.9
45emb|CR385036.3| Human DNA sequence from clone WI2-2890K7 on chro... 40 5.9
46dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
47dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
48gb|AC084781.2|AC084781 Homo sapiens chromosome 15 clone RP11-355... 40 5.9
49gb|AC154376.3| Mus musculus BAC clone RP23-71H16 from chromosome... 40 5.9
50gb|AC007282.4| Homo sapiens BAC clone RP11-484N9 from 2, complet... 40 5.9
51dbj|AP004043.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
52emb|CR753886.11| Zebrafish DNA sequence from clone DKEY-189E1 in... 40 5.9
53emb|BX914215.7| Zebrafish DNA sequence from clone DKEY-245F7 in ... 40 5.9
54emb|Z82056.1|CET26H5 Caenorhabditis elegans Cosmid T26H5, comple... 40 5.9
55emb|Z74196.1|SCYDL148C S.cerevisiae chromosome IV reading frame ... 40 5.9
56emb|AL133162.4|CNS01DU5 Human chromosome 14 DNA sequence BAC C-2... 40 5.9
57emb|CT010582.12| Mouse DNA sequence from clone RP23-385M20 on ch... 40 5.9
58gb|AC128703.4| Mus musculus BAC clone RP23-356E22 from 19, compl... 40 5.9
59dbj|AP004504.1| Lotus japonicus genomic DNA, chromosome 5, clone... 40 5.9
60emb|AL645547.14| Mouse DNA sequence from clone RP23-158M12 on ch... 40 5.9 
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                        
Query: 250      attccttctgggaaaatgaagaagaaaatcctcaaaccacttttcagcatggaaaa 305
                ||||||||||||||||||| | |||||| | | ||||| |||||||||| ||||||
Sbjct: 22320973 attccttctgggaaaatgagggagaaaaccttaaaacctcttttcagcagggaaaa 22320918
to top
>dbj|AK068842.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013162C23, full
            insert sequence
          Length = 3754

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                    
Query: 250  attccttctgggaaaatgaagaagaaaatcctcaaaccacttttcagcatggaaaa 305
            ||||||||||||||||||| | |||||| | | ||||| |||||||||| ||||||
Sbjct: 3621 attccttctgggaaaatgagggagaaaaccttaaaacctcttttcagcagggaaaa 3566
to top
>dbj|AK060713.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-C12, full
            insert sequence
          Length = 1344

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                    
Query: 250  attccttctgggaaaatgaagaagaaaatcctcaaaccacttttcagcatggaaaa 305
            ||||||||||||||||||| | |||||| | | ||||| |||||||||| ||||||
Sbjct: 1205 attccttctgggaaaatgagggagaaaaccttaaaacctcttttcagcagggaaaa 1150
to top
>emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22,
             complete sequence
          Length = 147214

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                     
Query: 250   attccttctgggaaaatgaagaagaaaatcctcaaaccacttttcagcatggaaaa 305
             ||||||||||||||||||| | |||||| | | ||||| |||||||||| ||||||
Sbjct: 71877 attccttctgggaaaatgagggagaaaaccttaaaacctcttttcagcagggaaaa 71822
to top
>emb|Z69721.1|HSU201H11 Human DNA sequence from clone LL0XNC01-201H11 on chromosome X Contains
             part of the IL1RAPL2 gene for  interleukin 1 receptor
             accessory protein-like 2, complete sequence
          Length = 32886

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 255   ttctgggaaaatgaagaagaaa 276
             ||||||||||||||||||||||
Sbjct: 21224 ttctgggaaaatgaagaagaaa 21203
to top
>gb|AC053523.5| Homo sapiens BAC clone RP11-563J6 from 2, complete sequence
          Length = 172405

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 4      agaaataatgcaaaattttaga 25
              ||||||||||||||||||||||
Sbjct: 152557 agaaataatgcaaaattttaga 152536
to top
>gb|AC005879.3|AC005879 citb_287_c_20, complete sequence
          Length = 190982

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 262    aaaatgaagaagaaaatcctca 283
              ||||||||||||||||||||||
Sbjct: 176727 aaaatgaagaagaaaatcctca 176748
to top
>emb|AL772205.12| Mouse DNA sequence from clone RP23-162C3 on chromosome 2, complete
              sequence
          Length = 142565

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 172    agaagtataaaaaagaaaacatccta 197
              ||||||||||||||||||| ||||||
Sbjct: 132173 agaagtataaaaaagaaaagatccta 132148
to top
>gb|AC130843.3| Mus musculus BAC clone RP24-501N9 from chromosome 1, complete sequence
          Length = 141921

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 397    ggtagttacccaaactcttca 417
              |||||||||||||||||||||
Sbjct: 121300 ggtagttacccaaactcttca 121320
to top
>gb|AC115721.11| Mus musculus chromosome 3, clone RP23-9P8, complete sequence
          Length = 218746

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 263    aaatgaagaagaaaatcctca 283
              |||||||||||||||||||||
Sbjct: 208786 aaatgaagaagaaaatcctca 208806
to top
>gb|AC073332.13| Homo sapiens BAC clone RP11-435M6 from 7, complete sequence
          Length = 132191

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 142    ctttcttttctgaaacaagga 162
              |||||||||||||||||||||
Sbjct: 101856 ctttcttttctgaaacaagga 101836
to top
>gb|AC160549.5| Mus musculus chromosome 3, clone RP23-276K18, complete sequence
          Length = 157222

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 263    aaatgaagaagaaaatcctca 283
              |||||||||||||||||||||
Sbjct: 105136 aaatgaagaagaaaatcctca 105156
to top
>gb|CP000107.1| Ehrlichia canis str. Jake, complete genome
          Length = 1315030

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 49     aaacacaacattaaaagaaaa 69
              |||||||||||||||||||||
Sbjct: 297824 aaacacaacattaaaagaaaa 297804
to top
>emb|AL160175.5| Human DNA sequence from clone RP11-243J16 on chromosome 20 Contains the
             BCL2L1 gene for the apoptosis regulator BCL2-like 1, the
             C20orf1 gene encoding the targeting protein for XKLP2
             (FLS353), the MYLK gene for myosin light chain kinase 2
             (skeletal muscle), the FKHL18 gene for forkhead-like 18
             (Drosophila)(FREAC10), an ATP synthase H+ transporting
             mitochondrial F0 complex subunit f isoform 2 (ATP5J2)
             pseudogene, the DUSP15 gene for dual specificity
             phosphatase-like 15, the 3' end of a novel gene, the 5'
             end of the C20orf125 gene and seven CpG islands, complete
             sequence
          Length = 168860

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 171   gagaagtataaaaaagaaaac 191
             |||||||||||||||||||||
Sbjct: 21072 gagaagtataaaaaagaaaac 21052
to top
>ref|XM_693513.1| PREDICTED: Danio rerio similar to PI-3-kinase-related kinase SMG-1
           (LOC570080), mRNA
          Length = 11034

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 284 aaccacttttcagcatggaaa 304
           |||||||||||||||||||||
Sbjct: 447 aaccacttttcagcatggaaa 467
to top
>ref|XM_693217.1| PREDICTED: Danio rerio similar to PI-3-kinase-related kinase SMG-1
           (LOC569810), mRNA
          Length = 11022

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 284 aaccacttttcagcatggaaa 304
           |||||||||||||||||||||
Sbjct: 447 aaccacttttcagcatggaaa 467
to top
>emb|BX323078.8| Zebrafish DNA sequence from clone DKEYP-55A5 in linkage group 3, complete
              sequence
          Length = 174108

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 284    aaccacttttcagcatggaaa 304
              |||||||||||||||||||||
Sbjct: 147114 aaccacttttcagcatggaaa 147094
to top
>emb|BX004999.8| Zebrafish DNA sequence from clone DKEY-66I24 in linkage group 3, complete
              sequence
          Length = 168839

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 284    aaccacttttcagcatggaaa 304
              |||||||||||||||||||||
Sbjct: 132305 aaccacttttcagcatggaaa 132285
to top
>gb|AY996787.1| Cunninghamella elegans unknown mRNA
          Length = 916

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 180 aaaaaagaaaacatcctattc 200
           |||||||||||||||||||||
Sbjct: 655 aaaaaagaaaacatcctattc 675
to top
>gb|AC009962.11| Homo sapiens BAC clone RP11-366L5 from 2, complete sequence
          Length = 177512

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 64    agaaaattatgcaaaatttta 84
             |||||||||||||||||||||
Sbjct: 51140 agaaaattatgcaaaatttta 51120
to top
>gb|AC017083.7| Homo sapiens BAC clone RP11-474G23 from 2, complete sequence
          Length = 198278

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 61     aaaagaaaattatgcaaaattttagatca 89
              |||| ||||||||||||||||||| ||||
Sbjct: 181709 aaaaaaaaattatgcaaaattttatatca 181737
to top
>gb|AC154593.2| Mus musculus BAC clone RP23-350J12 from chromosome 14, complete sequence
          Length = 214057

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 287    cacttttcagcatggaaaag 306
              ||||||||||||||||||||
Sbjct: 112030 cacttttcagcatggaaaag 112049
to top
>gb|AC113448.14| Mus musculus chromosome 15, clone RP23-1N23, complete sequence
          Length = 216103

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    aacacaacattaaaagaaaa 69
             ||||||||||||||||||||
Sbjct: 11439 aacacaacattaaaagaaaa 11458
to top
>gb|BC070806.1| Xenopus laevis hypothetical protein MGC83879, mRNA (cDNA clone
            MGC:83879 IMAGE:6857015), complete cds
          Length = 3504

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 50   aacacaacattaaaagaaaa 69
            ||||||||||||||||||||
Sbjct: 3324 aacacaacattaaaagaaaa 3305
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 60      taaaagaaaattatgcaaaatttt 83
               ||||||| ||||||||||||||||
Sbjct: 5000069 taaaagataattatgcaaaatttt 5000092
to top
>gb|AC126674.3| Mus musculus BAC clone RP23-364B6 from chromosome 19, complete sequence
          Length = 203282

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 320    atgaaaactccccacagagctgaa 343
              |||||||||| |||||||||||||
Sbjct: 146752 atgaaaactctccacagagctgaa 146775
to top
>ref|XM_729807.1| Plasmodium chabaudi chabaudi hypothetical protein (PC300415.00.0)
           partial mRNA
          Length = 501

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 59  ttaaaagaaaattatgcaaa 78
           ||||||||||||||||||||
Sbjct: 427 ttaaaagaaaattatgcaaa 446
to top
>gb|AC141323.9| Medicago truncatula clone mth2-6a23, complete sequence
          Length = 132894

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 58    attaaaagaaaattatgcaa 77
             ||||||||||||||||||||
Sbjct: 20311 attaaaagaaaattatgcaa 20330
to top
>gb|AC149805.12| Medicago truncatula clone mth2-146o17, complete sequence
          Length = 89758

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 58    attaaaagaaaattatgcaa 77
             ||||||||||||||||||||
Sbjct: 52459 attaaaagaaaattatgcaa 52478
to top
>emb|CR352342.9| Zebrafish DNA sequence from clone CH211-134H7 in linkage group 12,
              complete sequence
          Length = 186937

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 187    aaaacatcctattctttctg 206
              ||||||||||||||||||||
Sbjct: 165214 aaaacatcctattctttctg 165233
to top
>emb|AL356093.20| Human DNA sequence from clone RP11-382K22 on chromosome 10 Contains a
              ribosomal protein L7 (RPL7) pseudogene, complete sequence
          Length = 200536

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 171    gagaagtataaaaaagaaaa 190
              ||||||||||||||||||||
Sbjct: 132440 gagaagtataaaaaagaaaa 132421
to top
>gb|AC145480.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNAa0064E16, from chromosome 3, complete sequence
          Length = 139123

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 60    taaaagaaaattatgcaaaatttt 83
             ||||||| ||||||||||||||||
Sbjct: 64523 taaaagataattatgcaaaatttt 64546
to top
>emb|AL157813.11| Human DNA sequence from clone RP11-165D7 on chromosome 13 Contains the
             CHC1L gene for chromosome condensation 1-like, 3 novel
             genes and a CpG island, complete sequence
          Length = 114519

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 171   gagaagtataaaaaagaaaa 190
             ||||||||||||||||||||
Sbjct: 83863 gagaagtataaaaaagaaaa 83844
to top
>emb|AL034369.1|HSA149D17 Human DNA sequence from clone RP6-149D17 on chromosome Xq22.2-23
             Contains the gene for a novel protein similar to
             pancreatic lipase-related protein 2 (PNLIPRP2), the 5' end
             of the COL4A6 gene for type IV alpha 6 collagen and the 5'
             end of the COL4A5 gene for type IV alpha 5 collagen
             (Alport syndrome), complete sequence
          Length = 122157

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 142   ctttcttttctgaaacaagg 161
             ||||||||||||||||||||
Sbjct: 27341 ctttcttttctgaaacaagg 27322
to top
>gb|AC160461.3| Mus musculus chromosome 15, clone RP23-174B9, complete sequence
          Length = 208877

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    aacacaacattaaaagaaaa 69
             ||||||||||||||||||||
Sbjct: 44760 aacacaacattaaaagaaaa 44779
to top
>emb|X97751.1|SCIV23 S.cerevisiae chrIV genes STE7, CLB3, MSH5, RPC53, RET1
          Length = 23096

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 255   ttctgggaaaatgaagaaga 274
             ||||||||||||||||||||
Sbjct: 16896 ttctgggaaaatgaagaaga 16877
to top
>emb|AL080283.1|ATF3L17 Arabidopsis thaliana DNA chromosome 4, BAC clone F3L17 (ESSA project)
          Length = 94319

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 180   aaaaaagaaaacatcctatt 199
             ||||||||||||||||||||
Sbjct: 40476 aaaaaagaaaacatcctatt 40457
to top
>emb|AL161579.2|ATCHRIV75 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 75
          Length = 196242

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 180   aaaaaagaaaacatcctatt 199
             ||||||||||||||||||||
Sbjct: 28541 aaaaaagaaaacatcctatt 28522
to top
>emb|BX511171.13| Zebrafish DNA sequence from clone DKEY-264K15 in linkage group 4
            Contains the ascl1a gene for achaete-scute complex-like
            1a (Drosophila), the gene for a novel protein similar to
            vertebrate RecQ protein-like DNA helicase Q1-like
            (RECQL), the gene for a novel protein similar to tyrosine
            hydroxylase (th), the pah gene for phenylalanine
            hydroxylase, the 5' end of the gene for a novel protein
            similar to vertebrate uncharacterized hematopoietic
            stem/progenitor cells protein MDS028 (MDS028) and a CpG
            island, complete sequence
          Length = 166242

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 258  tgggaaaatgaagaagaaaa 277
            ||||||||||||||||||||
Sbjct: 3466 tgggaaaatgaagaagaaaa 3485
to top
>gb|AC097381.3| Homo sapiens BAC clone RP11-338K13 from 4, complete sequence
          Length = 214098

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 322   gaaaactccccacagagctg 341
             ||||||||||||||||||||
Sbjct: 83466 gaaaactccccacagagctg 83447
to top
>gb|AC113370.2| Homo sapiens chromosome 5 clone RP11-124O5, complete sequence
          Length = 189590

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 46   agtaaacacaacattaaaagaaaa 69
            |||||||| |||||||||||||||
Sbjct: 4028 agtaaacaaaacattaaaagaaaa 4051
to top
>gb|AC007537.3| Homo sapiens 12 BAC RPCI11-267J23 (Roswell Park Cancer Institute
            Human BAC Library) complete sequence
          Length = 190858

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 278  tcctcaaaccacttttcagc 297
            ||||||||||||||||||||
Sbjct: 7843 tcctcaaaccacttttcagc 7862
to top
>gb|AC022387.8| Homo sapiens chromosome 10 clone RP11-111N20, complete sequence
          Length = 185819

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 171   gagaagtataaaaaagaaaa 190
             ||||||||||||||||||||
Sbjct: 26079 gagaagtataaaaaagaaaa 26060
to top
>gb|AC093294.3| Homo sapiens chromosome 5 clone RP11-524C16, complete sequence
          Length = 171739

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 46     agtaaacacaacattaaaagaaaa 69
              |||||||| |||||||||||||||
Sbjct: 122413 agtaaacaaaacattaaaagaaaa 122436
to top
>emb|CR385036.3| Human DNA sequence from clone WI2-2890K7 on chromosome 9, complete
             sequence
          Length = 26133

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 143   tttcttttctgaaacaagga 162
             ||||||||||||||||||||
Sbjct: 15806 tttcttttctgaaacaagga 15825
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 60      taaaagaaaattatgcaaaatttt 83
               ||||||| ||||||||||||||||
Sbjct: 4999284 taaaagataattatgcaaaatttt 4999307
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 68       aattatgcaaaattttagat 87
                ||||||||||||||||||||
Sbjct: 35699023 aattatgcaaaattttagat 35699042
to top
>gb|AC084781.2|AC084781 Homo sapiens chromosome 15 clone RP11-355N15 map 15q21.3, complete
             sequence
          Length = 173386

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 273   gaaaatcctcaaaccacttt 292
             ||||||||||||||||||||
Sbjct: 62330 gaaaatcctcaaaccacttt 62311
to top
>gb|AC154376.3| Mus musculus BAC clone RP23-71H16 from chromosome 13, complete sequence
          Length = 169417

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    aacacaacattaaaagaaaa 69
             ||||||||||||||||||||
Sbjct: 24192 aacacaacattaaaagaaaa 24211
to top
>gb|AC007282.4| Homo sapiens BAC clone RP11-484N9 from 2, complete sequence
          Length = 182632

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 63    aagaaaattatgcaaaattt 82
             ||||||||||||||||||||
Sbjct: 40769 aagaaaattatgcaaaattt 40788
to top
>dbj|AP004043.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1124_D06
          Length = 102239

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 68    aattatgcaaaattttagat 87
             ||||||||||||||||||||
Sbjct: 59637 aattatgcaaaattttagat 59656
to top
>emb|CR753886.11| Zebrafish DNA sequence from clone DKEY-189E1 in linkage group 24,
             complete sequence
          Length = 142977

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 180   aaaaaagaaaacatcctattcttt 203
             |||||| |||||||||||||||||
Sbjct: 82494 aaaaaaaaaaacatcctattcttt 82517
to top
>emb|BX914215.7| Zebrafish DNA sequence from clone DKEY-245F7 in linkage group 4,
             complete sequence
          Length = 141185

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 258   tgggaaaatgaagaagaaaa 277
             ||||||||||||||||||||
Sbjct: 59199 tgggaaaatgaagaagaaaa 59180
to top
>emb|Z82056.1|CET26H5 Caenorhabditis elegans Cosmid T26H5, complete sequence
          Length = 19736

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 59    ttaaaagaaaattatgcaaaattt 82
             ||||||||||||| ||||||||||
Sbjct: 15873 ttaaaagaaaattctgcaaaattt 15850
to top
>emb|Z74196.1|SCYDL148C S.cerevisiae chromosome IV reading frame ORF YDL148c
          Length = 3005

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 255  ttctgggaaaatgaagaaga 274
            ||||||||||||||||||||
Sbjct: 1666 ttctgggaaaatgaagaaga 1647
to top
>emb|AL133162.4|CNS01DU5 Human chromosome 14 DNA sequence BAC C-2591A6 of library CalTech-D from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 196431

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 262   aaaatgaagaagaaaatcctcaaa 285
             ||||| ||||||||||||||||||
Sbjct: 94938 aaaattaagaagaaaatcctcaaa 94915
to top
>emb|CT010582.12| Mouse DNA sequence from clone RP23-385M20 on chromosome 14, complete
              sequence
          Length = 216611

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 287    cacttttcagcatggaaaag 306
              ||||||||||||||||||||
Sbjct: 168711 cacttttcagcatggaaaag 168730
to top
>gb|AC128703.4| Mus musculus BAC clone RP23-356E22 from 19, complete sequence
          Length = 221568

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 320   atgaaaactccccacagagctgaa 343
             |||||||||| |||||||||||||
Sbjct: 23455 atgaaaactctccacagagctgaa 23478
to top
>dbj|AP004504.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT02M03, TM0034b,
             complete sequence
          Length = 35858

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 50    aacacaacattaaaagaaaa 69
             ||||||||||||||||||||
Sbjct: 26936 aacacaacattaaaagaaaa 26917
to top
>emb|AL645547.14| Mouse DNA sequence from clone RP23-158M12 on chromosome X, complete
              sequence
          Length = 173477

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 178    ataaaaaagaaaacatccta 197
              ||||||||||||||||||||
Sbjct: 154817 ataaaaaagaaaacatccta 154798


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,195,376
Number of Sequences: 3902068
Number of extensions: 7195376
Number of successful extensions: 151383
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 151058
Number of HSP's gapped (non-prelim): 325
length of query: 442
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 420
effective length of database: 17,147,199,772
effective search space: 7201823904240
effective search space used: 7201823904240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top