ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl31d02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LX12L_MOUSE (P39654) Arachidonate 12-lipoxygenase, leukocyte-typ... 29 5.9
2LOX12_BOVIN (P27479) Arachidonate 12-lipoxygenase, 12S-type (EC ... 29 7.7

>LX12L_MOUSE (P39654) Arachidonate 12-lipoxygenase, leukocyte-type (EC|
           1.13.11.31) (12-LOX)
          Length = 662

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -2

Query: 439 RAEKMPVSEDGYLDLSRQVVSVKSGGRLEILMQAGDF 329
           RA    +SE G+ D   +V+S   GG L++L QAG F
Sbjct: 402 RARSDLISERGFFD---KVMSTGGGGHLDLLKQAGAF 435



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>LOX12_BOVIN (P27479) Arachidonate 12-lipoxygenase, 12S-type (EC 1.13.11.31)|
           (12-LOX)
          Length = 662

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = -2

Query: 439 RAEKMPVSEDGYLDLSRQVVSVKSGGRLEILMQAGDF 329
           RA    VS+ G  D   QVVS   GG +E+L +AG F
Sbjct: 402 RARTGLVSDSGVFD---QVVSTGGGGHVELLQRAGAF 435


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,520,590
Number of Sequences: 219361
Number of extensions: 1215685
Number of successful extensions: 2793
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2793
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3420806017
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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