ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl31d01 |
|---|---|
| Clone Library Name | barley_pub |
>SND1_MOUSE (Q78PY7) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 33.1 bits (74), Expect = 0.40 Identities = 18/48 (37%), Positives = 25/48 (52%) Frame = -1 Query: 460 EEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVESD 317 +EGL +E K K+ + + QE AK RL LW+YGD +D Sbjct: 857 KEGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNLWRYGDFRAD 901
>SND1_HUMAN (Q7KZF4) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (EBNA2 coactivator p100) Length = 910 Score = 33.1 bits (74), Expect = 0.40 Identities = 18/48 (37%), Positives = 25/48 (52%) Frame = -1 Query: 460 EEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVESD 317 +EGL +E K K+ + + QE AK RL LW+YGD +D Sbjct: 857 KEGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNLWRYGDFRAD 901
>SND1_BOVIN (Q863B3) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 33.1 bits (74), Expect = 0.40 Identities = 18/48 (37%), Positives = 25/48 (52%) Frame = -1 Query: 460 EEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVESD 317 +EGL +E K K+ + + QE AK RL LW+YGD +D Sbjct: 857 KEGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNLWRYGDFRAD 901
>SND1_RAT (Q66X93) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (SND p102) (p105 coactivator) Length = 909 Score = 33.1 bits (74), Expect = 0.40 Identities = 18/48 (37%), Positives = 25/48 (52%) Frame = -1 Query: 460 EEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVESD 317 +EGL +E K K+ + + QE AK RL LW+YGD +D Sbjct: 856 KEGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNLWRYGDFRAD 900
>K2C6C_HUMAN (P48666) Keratin, type II cytoskeletal 6C (Cytokeratin-6C) (CK 6C)| (K6c keratin) Length = 563 Score = 30.8 bits (68), Expect = 2.0 Identities = 15/47 (31%), Positives = 25/47 (53%) Frame = -1 Query: 484 IQHQCCHAEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRL 344 ++ QC + + +A E+ K+ K LE LE +KAK++ RL Sbjct: 397 VKKQCANLQAAIADAEQRGEMALKDAKNKLEGLEDALQKAKQDLARL 443
>K2C6B_HUMAN (P04259) Keratin, type II cytoskeletal 6B (Cytokeratin-6B) (CK 6B)| (K6b keratin) Length = 563 Score = 30.8 bits (68), Expect = 2.0 Identities = 15/47 (31%), Positives = 25/47 (53%) Frame = -1 Query: 484 IQHQCCHAEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRL 344 ++ QC + + +A E+ K+ K LE LE +KAK++ RL Sbjct: 397 VKKQCANLQAAIADAEQRGEMALKDAKNKLEGLEDALQKAKQDLARL 443
>K2C6A_HUMAN (P02538) Keratin, type II cytoskeletal 6A (Cytokeratin-6A) (CK 6A)| (K6a keratin) Length = 563 Score = 30.8 bits (68), Expect = 2.0 Identities = 15/47 (31%), Positives = 25/47 (53%) Frame = -1 Query: 484 IQHQCCHAEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRL 344 ++ QC + + +A E+ K+ K LE LE +KAK++ RL Sbjct: 397 VKKQCANLQAAIADAEQRGEMALKDAKNKLEGLEDALQKAKQDLARL 443
>K2C6B_MOUSE (Q9Z331) Keratin, type II cytoskeletal 6B (Cytokeratin-6B) (CK 6B)| (K6b keratin) (Keratin-6 beta) (mK6-beta) Length = 561 Score = 30.4 bits (67), Expect = 2.6 Identities = 15/47 (31%), Positives = 25/47 (53%) Frame = -1 Query: 484 IQHQCCHAEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRL 344 ++ QC + + +A E+ K+ + LE LE +KAK+E RL Sbjct: 394 VKKQCANLQAAIADAEQRGEMALKDARGKLEGLEDALQKAKQEMARL 440
>DDX46_BRARE (Q4TVV3) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)| (DEAD box protein 46) Length = 1018 Score = 30.4 bits (67), Expect = 2.6 Identities = 14/49 (28%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Frame = -1 Query: 460 EEGLARLERGKRWDTKERKTALENLEQFQEKAKK-ERLRLWQYGDVESD 317 EE R ER ++W ++RKTA+EN+ + +++ ++ ++ + W D + + Sbjct: 126 EEMRKRKERVEKWREEQRKTAMENIGEIKKELEEMKQGKKWSLEDDDEE 174
>NADB2_RALSO (Q8XQG4) L-aspartate oxidase 2 (EC 1.4.3.16) (LASPO 2) (Quinolinate| synthetase B 2) Length = 536 Score = 30.4 bits (67), Expect = 2.6 Identities = 14/24 (58%), Positives = 16/24 (66%) Frame = +1 Query: 256 CLLSSTDAAGVSSRLELALPRRIQ 327 C S TD AG +SRL L LP RI+ Sbjct: 396 CAQSVTDTAGSASRLRLTLPERIE 419
>K2C6E_HUMAN (P48668) Keratin, type II cytoskeletal 6E (Cytokeratin-6E) (CK 6E)| (K6e keratin) (Keratin K6h) Length = 563 Score = 30.0 bits (66), Expect = 3.4 Identities = 15/47 (31%), Positives = 24/47 (51%) Frame = -1 Query: 484 IQHQCCHAEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRL 344 ++ QC + +A E+ K+ K LE LE +KAK++ RL Sbjct: 397 VKKQCASLQAAIADAEQRGEMALKDAKNKLEGLEDALQKAKQDLARL 443
>K2C6D_HUMAN (P48667) Keratin, type II cytoskeletal 6D (Cytokeratin-6D) (CK 6D)| (K6d keratin) (Fragment) Length = 384 Score = 30.0 bits (66), Expect = 3.4 Identities = 15/47 (31%), Positives = 24/47 (51%) Frame = -1 Query: 484 IQHQCCHAEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRL 344 ++ QC + +A E+ K+ K LE LE +KAK++ RL Sbjct: 218 VKKQCASLQAAIADAEQRGEMALKDAKNKLEGLEDALQKAKQDLARL 264
>DDX46_RAT (Q62780) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)| (DEAD box protein 46) (Helicase of 117.4 kDa) Length = 1032 Score = 29.6 bits (65), Expect = 4.4 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Frame = -1 Query: 460 EEGLARLERGKRWDTKERKTALENLEQFQEKAKK-ERLRLWQYGDVESD 317 EE R ER ++W ++RK A+EN+ + +++ ++ ++ + W D + D Sbjct: 158 EEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDD 206
>DDX46_PONPY (Q5R6D8) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)| (DEAD box protein 46) Length = 1032 Score = 29.6 bits (65), Expect = 4.4 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Frame = -1 Query: 460 EEGLARLERGKRWDTKERKTALENLEQFQEKAKK-ERLRLWQYGDVESD 317 EE R ER ++W ++RK A+EN+ + +++ ++ ++ + W D + D Sbjct: 158 EEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDD 206
>DDX46_MOUSE (Q569Z5) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)| (DEAD box protein 46) Length = 1032 Score = 29.6 bits (65), Expect = 4.4 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Frame = -1 Query: 460 EEGLARLERGKRWDTKERKTALENLEQFQEKAKK-ERLRLWQYGDVESD 317 EE R ER ++W ++RK A+EN+ + +++ ++ ++ + W D + D Sbjct: 158 EEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDD 206
>DDX46_HUMAN (Q7L014) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)| (DEAD box protein 46) (PRP5 homolog) Length = 1032 Score = 29.6 bits (65), Expect = 4.4 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Frame = -1 Query: 460 EEGLARLERGKRWDTKERKTALENLEQFQEKAKK-ERLRLWQYGDVESD 317 EE R ER ++W ++RK A+EN+ + +++ ++ ++ + W D + D Sbjct: 158 EEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDD 206
>URED_SYNY3 (P73047) Urease accessory protein ureD| Length = 270 Score = 29.6 bits (65), Expect = 4.4 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = -3 Query: 281 AASVDERRQWHAQSWFRYESFGHRAKLSRELI*KLSKKERLY 156 A++V+ W A W RY+ GHR ++ L+ K +R + Sbjct: 4 ASTVNPSAPWQANLWLRYDRPGHRTRMVECLVQAPLKVQRSF 45
>CBF5_YEAST (P33322) H/ACA ribonucleoprotein complex subunit 4 (EC 5.4.99.-)| (Centromere/microtubule-binding protein CBF5) (Centromere-binding factor 5) (Small nucleolar RNP protein CBF5) (H/ACA snoRNP protein CBF5) (p64') Length = 483 Score = 29.3 bits (64), Expect = 5.8 Identities = 15/46 (32%), Positives = 28/46 (60%) Frame = -1 Query: 460 EEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVE 323 +E ++ E+ ++ D KE+K E ++ ++K KKE+ R + GD E Sbjct: 429 KEDDSKKEKKEKKDKKEKKEKKEKKDKKEKKEKKEKKRKSEDGDSE 474
>K2C5_MOUSE (Q922U2) Keratin, type II cytoskeletal 5 (Cytokeratin-5) (CK-5)| (Keratin-5) (K5) Length = 580 Score = 29.3 bits (64), Expect = 5.8 Identities = 13/47 (27%), Positives = 25/47 (53%) Frame = -1 Query: 484 IQHQCCHAEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRL 344 ++ QC + + +A E+ K+ + L LE+ +KAK++ RL Sbjct: 397 VKKQCANLQNAIAEAEQRGELALKDARNKLTELEEALQKAKQDMARL 443
>K2C6A_MOUSE (P50446) Keratin, type II cytoskeletal 6A (Cytokeratin-6A) (CK 6A)| (K6a keratin) (Keratin-6 alpha) (mK6-alpha) Length = 552 Score = 29.3 bits (64), Expect = 5.8 Identities = 14/47 (29%), Positives = 25/47 (53%) Frame = -1 Query: 484 IQHQCCHAEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRL 344 ++ QC + + +A E+ K+ + LE LE +KAK++ RL Sbjct: 386 VKKQCANLQAAIADAEQRGEMALKDARGKLEGLEDALQKAKQDMARL 432
>K2C5_RAT (Q6P6Q2) Keratin, type II cytoskeletal 5 (Cytokeratin-5) (CK-5)| (Keratin-5) (K5) Length = 576 Score = 29.3 bits (64), Expect = 5.8 Identities = 13/47 (27%), Positives = 25/47 (53%) Frame = -1 Query: 484 IQHQCCHAEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRL 344 ++ QC + + +A E+ K+ + L LE+ +KAK++ RL Sbjct: 399 VKKQCANLQNAIAEAEQRGELALKDARNKLTELEEALQKAKQDMARL 445
>MTA70_DROME (Q9VCE6) Probable N6-adenosine-methyltransferase MT-A70-like| protein (EC 2.1.1.62) Length = 608 Score = 28.9 bits (63), Expect = 7.6 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = -1 Query: 424 WDTKERKTALENLEQFQEKAKKERLRLWQYGDVESD 317 WD K KT L + EK KKER+ + D++ D Sbjct: 5 WDIKSLKTKRNTLREKLEKRKKERIEI--LSDIQED 38
>ADSV_MOUSE (Q60604) Adseverin (Scinderin) (Gelsolin-like protein)| Length = 715 Score = 28.9 bits (63), Expect = 7.6 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%) Frame = -1 Query: 484 IQHQCCHAEEGLAR---LERGKRWDTKERKTALENLEQFQEKAK 362 + +C + G A+ + +GK + +ERKTA++ E+F +K K Sbjct: 278 LSEECFILDHGAAKQIFVWKGKNANPQERKTAMKTAEEFLQKMK 321
>DYN1_RAT (P21575) Dynamin-1 (EC 3.6.5.5) (D100) (Dynamin, brain) (B-dynamin)| Length = 851 Score = 28.5 bits (62), Expect = 9.9 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = -2 Query: 348 ACGSMETLNPTRKSKLQAGGDPRRVGRREKA 256 AC + E ++ + S L+AG P RVG +EKA Sbjct: 606 ACETQEEVDSWKASFLRAGVYPERVGDKEKA 636
>SYK2_MYCTU (P94974) Putative lysyl-tRNA synthetase 2 (EC 6.1.1.6)| (Lysine--tRNA ligase 2) (LysRS 2) Length = 1172 Score = 28.5 bits (62), Expect = 9.9 Identities = 11/16 (68%), Positives = 11/16 (68%) Frame = +3 Query: 54 VLPLQRRNAVHRGHRP 101 VLP RRN VH GH P Sbjct: 628 VLPFSRRNRVHTGHHP 643
>SYK2_MYCBO (Q7VEV7) Putative lysyl-tRNA synthetase 2 (EC 6.1.1.6)| (Lysine--tRNA ligase 2) (LysRS 2) Length = 1172 Score = 28.5 bits (62), Expect = 9.9 Identities = 11/16 (68%), Positives = 11/16 (68%) Frame = +3 Query: 54 VLPLQRRNAVHRGHRP 101 VLP RRN VH GH P Sbjct: 628 VLPFSRRNRVHTGHHP 643
>K2C5_HUMAN (P13647) Keratin, type II cytoskeletal 5 (Cytokeratin-5) (CK-5)| (Keratin-5) (K5) (58 kDa cytokeratin) Length = 590 Score = 28.5 bits (62), Expect = 9.9 Identities = 13/47 (27%), Positives = 25/47 (53%) Frame = -1 Query: 484 IQHQCCHAEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRL 344 ++ QC + + +A E+ K+ + L LE+ +KAK++ RL Sbjct: 403 VKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARL 449
>DYN1_HUMAN (Q05193) Dynamin-1 (EC 3.6.5.5)| Length = 864 Score = 28.5 bits (62), Expect = 9.9 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = -2 Query: 348 ACGSMETLNPTRKSKLQAGGDPRRVGRREKA 256 AC + E ++ + S L+AG P RVG +EKA Sbjct: 606 ACETQEEVDSWKASFLRAGVYPERVGDKEKA 636
>DYN1_MOUSE (P39053) Dynamin-1 (EC 3.6.5.5)| Length = 867 Score = 28.5 bits (62), Expect = 9.9 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = -2 Query: 348 ACGSMETLNPTRKSKLQAGGDPRRVGRREKA 256 AC + E ++ + S L+AG P RVG +EKA Sbjct: 606 ACETQEEVDSWKASFLRAGVYPERVGDKEKA 636 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,569,224 Number of Sequences: 219361 Number of extensions: 1015193 Number of successful extensions: 3335 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 3229 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3331 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3362826254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
