ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl31d01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SND1_MOUSE (Q78PY7) Staphylococcal nuclease domain-containing pr... 33 0.40
2SND1_HUMAN (Q7KZF4) Staphylococcal nuclease domain-containing pr... 33 0.40
3SND1_BOVIN (Q863B3) Staphylococcal nuclease domain-containing pr... 33 0.40
4SND1_RAT (Q66X93) Staphylococcal nuclease domain-containing prot... 33 0.40
5K2C6C_HUMAN (P48666) Keratin, type II cytoskeletal 6C (Cytokerat... 31 2.0
6K2C6B_HUMAN (P04259) Keratin, type II cytoskeletal 6B (Cytokerat... 31 2.0
7K2C6A_HUMAN (P02538) Keratin, type II cytoskeletal 6A (Cytokerat... 31 2.0
8K2C6B_MOUSE (Q9Z331) Keratin, type II cytoskeletal 6B (Cytokerat... 30 2.6
9DDX46_BRARE (Q4TVV3) Probable ATP-dependent RNA helicase DDX46 (... 30 2.6
10NADB2_RALSO (Q8XQG4) L-aspartate oxidase 2 (EC 1.4.3.16) (LASPO ... 30 2.6
11K2C6E_HUMAN (P48668) Keratin, type II cytoskeletal 6E (Cytokerat... 30 3.4
12K2C6D_HUMAN (P48667) Keratin, type II cytoskeletal 6D (Cytokerat... 30 3.4
13DDX46_RAT (Q62780) Probable ATP-dependent RNA helicase DDX46 (EC... 30 4.4
14DDX46_PONPY (Q5R6D8) Probable ATP-dependent RNA helicase DDX46 (... 30 4.4
15DDX46_MOUSE (Q569Z5) Probable ATP-dependent RNA helicase DDX46 (... 30 4.4
16DDX46_HUMAN (Q7L014) Probable ATP-dependent RNA helicase DDX46 (... 30 4.4
17URED_SYNY3 (P73047) Urease accessory protein ureD 30 4.4
18CBF5_YEAST (P33322) H/ACA ribonucleoprotein complex subunit 4 (E... 29 5.8
19K2C5_MOUSE (Q922U2) Keratin, type II cytoskeletal 5 (Cytokeratin... 29 5.8
20K2C6A_MOUSE (P50446) Keratin, type II cytoskeletal 6A (Cytokerat... 29 5.8
21K2C5_RAT (Q6P6Q2) Keratin, type II cytoskeletal 5 (Cytokeratin-5... 29 5.8
22MTA70_DROME (Q9VCE6) Probable N6-adenosine-methyltransferase MT-... 29 7.6
23ADSV_MOUSE (Q60604) Adseverin (Scinderin) (Gelsolin-like protein) 29 7.6
24DYN1_RAT (P21575) Dynamin-1 (EC 3.6.5.5) (D100) (Dynamin, brain)... 28 9.9
25SYK2_MYCTU (P94974) Putative lysyl-tRNA synthetase 2 (EC 6.1.1.6... 28 9.9
26SYK2_MYCBO (Q7VEV7) Putative lysyl-tRNA synthetase 2 (EC 6.1.1.6... 28 9.9
27K2C5_HUMAN (P13647) Keratin, type II cytoskeletal 5 (Cytokeratin... 28 9.9
28DYN1_HUMAN (Q05193) Dynamin-1 (EC 3.6.5.5) 28 9.9
29DYN1_MOUSE (P39053) Dynamin-1 (EC 3.6.5.5) 28 9.9

>SND1_MOUSE (Q78PY7) Staphylococcal nuclease domain-containing protein 1 (p100|
           co-activator) (100 kDa coactivator)
          Length = 910

 Score = 33.1 bits (74), Expect = 0.40
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = -1

Query: 460 EEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVESD 317
           +EGL  +E  K    K+ +  +      QE AK  RL LW+YGD  +D
Sbjct: 857 KEGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNLWRYGDFRAD 901



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>SND1_HUMAN (Q7KZF4) Staphylococcal nuclease domain-containing protein 1 (p100|
           co-activator) (100 kDa coactivator) (EBNA2 coactivator
           p100)
          Length = 910

 Score = 33.1 bits (74), Expect = 0.40
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = -1

Query: 460 EEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVESD 317
           +EGL  +E  K    K+ +  +      QE AK  RL LW+YGD  +D
Sbjct: 857 KEGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNLWRYGDFRAD 901



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>SND1_BOVIN (Q863B3) Staphylococcal nuclease domain-containing protein 1 (p100|
           co-activator) (100 kDa coactivator)
          Length = 910

 Score = 33.1 bits (74), Expect = 0.40
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = -1

Query: 460 EEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVESD 317
           +EGL  +E  K    K+ +  +      QE AK  RL LW+YGD  +D
Sbjct: 857 KEGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNLWRYGDFRAD 901



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>SND1_RAT (Q66X93) Staphylococcal nuclease domain-containing protein 1 (p100|
           co-activator) (100 kDa coactivator) (SND p102) (p105
           coactivator)
          Length = 909

 Score = 33.1 bits (74), Expect = 0.40
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = -1

Query: 460 EEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVESD 317
           +EGL  +E  K    K+ +  +      QE AK  RL LW+YGD  +D
Sbjct: 856 KEGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNLWRYGDFRAD 900



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>K2C6C_HUMAN (P48666) Keratin, type II cytoskeletal 6C (Cytokeratin-6C) (CK 6C)|
           (K6c keratin)
          Length = 563

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -1

Query: 484 IQHQCCHAEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRL 344
           ++ QC + +  +A  E+      K+ K  LE LE   +KAK++  RL
Sbjct: 397 VKKQCANLQAAIADAEQRGEMALKDAKNKLEGLEDALQKAKQDLARL 443



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>K2C6B_HUMAN (P04259) Keratin, type II cytoskeletal 6B (Cytokeratin-6B) (CK 6B)|
           (K6b keratin)
          Length = 563

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -1

Query: 484 IQHQCCHAEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRL 344
           ++ QC + +  +A  E+      K+ K  LE LE   +KAK++  RL
Sbjct: 397 VKKQCANLQAAIADAEQRGEMALKDAKNKLEGLEDALQKAKQDLARL 443



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>K2C6A_HUMAN (P02538) Keratin, type II cytoskeletal 6A (Cytokeratin-6A) (CK 6A)|
           (K6a keratin)
          Length = 563

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -1

Query: 484 IQHQCCHAEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRL 344
           ++ QC + +  +A  E+      K+ K  LE LE   +KAK++  RL
Sbjct: 397 VKKQCANLQAAIADAEQRGEMALKDAKNKLEGLEDALQKAKQDLARL 443



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>K2C6B_MOUSE (Q9Z331) Keratin, type II cytoskeletal 6B (Cytokeratin-6B) (CK 6B)|
           (K6b keratin) (Keratin-6 beta) (mK6-beta)
          Length = 561

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -1

Query: 484 IQHQCCHAEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRL 344
           ++ QC + +  +A  E+      K+ +  LE LE   +KAK+E  RL
Sbjct: 394 VKKQCANLQAAIADAEQRGEMALKDARGKLEGLEDALQKAKQEMARL 440



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>DDX46_BRARE (Q4TVV3) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)|
           (DEAD box protein 46)
          Length = 1018

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 14/49 (28%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
 Frame = -1

Query: 460 EEGLARLERGKRWDTKERKTALENLEQFQEKAKK-ERLRLWQYGDVESD 317
           EE   R ER ++W  ++RKTA+EN+ + +++ ++ ++ + W   D + +
Sbjct: 126 EEMRKRKERVEKWREEQRKTAMENIGEIKKELEEMKQGKKWSLEDDDEE 174



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>NADB2_RALSO (Q8XQG4) L-aspartate oxidase 2 (EC 1.4.3.16) (LASPO 2) (Quinolinate|
           synthetase B 2)
          Length = 536

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +1

Query: 256 CLLSSTDAAGVSSRLELALPRRIQ 327
           C  S TD AG +SRL L LP RI+
Sbjct: 396 CAQSVTDTAGSASRLRLTLPERIE 419



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>K2C6E_HUMAN (P48668) Keratin, type II cytoskeletal 6E (Cytokeratin-6E) (CK 6E)|
           (K6e keratin) (Keratin K6h)
          Length = 563

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 484 IQHQCCHAEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRL 344
           ++ QC   +  +A  E+      K+ K  LE LE   +KAK++  RL
Sbjct: 397 VKKQCASLQAAIADAEQRGEMALKDAKNKLEGLEDALQKAKQDLARL 443



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>K2C6D_HUMAN (P48667) Keratin, type II cytoskeletal 6D (Cytokeratin-6D) (CK 6D)|
           (K6d keratin) (Fragment)
          Length = 384

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 484 IQHQCCHAEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRL 344
           ++ QC   +  +A  E+      K+ K  LE LE   +KAK++  RL
Sbjct: 218 VKKQCASLQAAIADAEQRGEMALKDAKNKLEGLEDALQKAKQDLARL 264



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>DDX46_RAT (Q62780) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)|
           (DEAD box protein 46) (Helicase of 117.4 kDa)
          Length = 1032

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = -1

Query: 460 EEGLARLERGKRWDTKERKTALENLEQFQEKAKK-ERLRLWQYGDVESD 317
           EE   R ER ++W  ++RK A+EN+ + +++ ++ ++ + W   D + D
Sbjct: 158 EEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDD 206



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>DDX46_PONPY (Q5R6D8) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)|
           (DEAD box protein 46)
          Length = 1032

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = -1

Query: 460 EEGLARLERGKRWDTKERKTALENLEQFQEKAKK-ERLRLWQYGDVESD 317
           EE   R ER ++W  ++RK A+EN+ + +++ ++ ++ + W   D + D
Sbjct: 158 EEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDD 206



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>DDX46_MOUSE (Q569Z5) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)|
           (DEAD box protein 46)
          Length = 1032

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = -1

Query: 460 EEGLARLERGKRWDTKERKTALENLEQFQEKAKK-ERLRLWQYGDVESD 317
           EE   R ER ++W  ++RK A+EN+ + +++ ++ ++ + W   D + D
Sbjct: 158 EEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDD 206



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>DDX46_HUMAN (Q7L014) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)|
           (DEAD box protein 46) (PRP5 homolog)
          Length = 1032

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = -1

Query: 460 EEGLARLERGKRWDTKERKTALENLEQFQEKAKK-ERLRLWQYGDVESD 317
           EE   R ER ++W  ++RK A+EN+ + +++ ++ ++ + W   D + D
Sbjct: 158 EEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDD 206



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>URED_SYNY3 (P73047) Urease accessory protein ureD|
          Length = 270

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -3

Query: 281 AASVDERRQWHAQSWFRYESFGHRAKLSRELI*KLSKKERLY 156
           A++V+    W A  W RY+  GHR ++   L+    K +R +
Sbjct: 4   ASTVNPSAPWQANLWLRYDRPGHRTRMVECLVQAPLKVQRSF 45



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>CBF5_YEAST (P33322) H/ACA ribonucleoprotein complex subunit 4 (EC 5.4.99.-)|
           (Centromere/microtubule-binding protein CBF5)
           (Centromere-binding factor 5) (Small nucleolar RNP
           protein CBF5) (H/ACA snoRNP protein CBF5) (p64')
          Length = 483

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = -1

Query: 460 EEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVE 323
           +E  ++ E+ ++ D KE+K   E  ++ ++K KKE+ R  + GD E
Sbjct: 429 KEDDSKKEKKEKKDKKEKKEKKEKKDKKEKKEKKEKKRKSEDGDSE 474



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>K2C5_MOUSE (Q922U2) Keratin, type II cytoskeletal 5 (Cytokeratin-5) (CK-5)|
           (Keratin-5) (K5)
          Length = 580

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -1

Query: 484 IQHQCCHAEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRL 344
           ++ QC + +  +A  E+      K+ +  L  LE+  +KAK++  RL
Sbjct: 397 VKKQCANLQNAIAEAEQRGELALKDARNKLTELEEALQKAKQDMARL 443



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>K2C6A_MOUSE (P50446) Keratin, type II cytoskeletal 6A (Cytokeratin-6A) (CK 6A)|
           (K6a keratin) (Keratin-6 alpha) (mK6-alpha)
          Length = 552

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -1

Query: 484 IQHQCCHAEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRL 344
           ++ QC + +  +A  E+      K+ +  LE LE   +KAK++  RL
Sbjct: 386 VKKQCANLQAAIADAEQRGEMALKDARGKLEGLEDALQKAKQDMARL 432



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>K2C5_RAT (Q6P6Q2) Keratin, type II cytoskeletal 5 (Cytokeratin-5) (CK-5)|
           (Keratin-5) (K5)
          Length = 576

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -1

Query: 484 IQHQCCHAEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRL 344
           ++ QC + +  +A  E+      K+ +  L  LE+  +KAK++  RL
Sbjct: 399 VKKQCANLQNAIAEAEQRGELALKDARNKLTELEEALQKAKQDMARL 445



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>MTA70_DROME (Q9VCE6) Probable N6-adenosine-methyltransferase MT-A70-like|
           protein (EC 2.1.1.62)
          Length = 608

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 424 WDTKERKTALENLEQFQEKAKKERLRLWQYGDVESD 317
           WD K  KT    L +  EK KKER+ +    D++ D
Sbjct: 5   WDIKSLKTKRNTLREKLEKRKKERIEI--LSDIQED 38



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>ADSV_MOUSE (Q60604) Adseverin (Scinderin) (Gelsolin-like protein)|
          Length = 715

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = -1

Query: 484 IQHQCCHAEEGLAR---LERGKRWDTKERKTALENLEQFQEKAK 362
           +  +C   + G A+   + +GK  + +ERKTA++  E+F +K K
Sbjct: 278 LSEECFILDHGAAKQIFVWKGKNANPQERKTAMKTAEEFLQKMK 321



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>DYN1_RAT (P21575) Dynamin-1 (EC 3.6.5.5) (D100) (Dynamin, brain) (B-dynamin)|
          Length = 851

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -2

Query: 348 ACGSMETLNPTRKSKLQAGGDPRRVGRREKA 256
           AC + E ++  + S L+AG  P RVG +EKA
Sbjct: 606 ACETQEEVDSWKASFLRAGVYPERVGDKEKA 636



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>SYK2_MYCTU (P94974) Putative lysyl-tRNA synthetase 2 (EC 6.1.1.6)|
           (Lysine--tRNA ligase 2) (LysRS 2)
          Length = 1172

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +3

Query: 54  VLPLQRRNAVHRGHRP 101
           VLP  RRN VH GH P
Sbjct: 628 VLPFSRRNRVHTGHHP 643



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>SYK2_MYCBO (Q7VEV7) Putative lysyl-tRNA synthetase 2 (EC 6.1.1.6)|
           (Lysine--tRNA ligase 2) (LysRS 2)
          Length = 1172

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +3

Query: 54  VLPLQRRNAVHRGHRP 101
           VLP  RRN VH GH P
Sbjct: 628 VLPFSRRNRVHTGHHP 643



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>K2C5_HUMAN (P13647) Keratin, type II cytoskeletal 5 (Cytokeratin-5) (CK-5)|
           (Keratin-5) (K5) (58 kDa cytokeratin)
          Length = 590

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -1

Query: 484 IQHQCCHAEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRL 344
           ++ QC + +  +A  E+      K+ +  L  LE+  +KAK++  RL
Sbjct: 403 VKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARL 449



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>DYN1_HUMAN (Q05193) Dynamin-1 (EC 3.6.5.5)|
          Length = 864

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -2

Query: 348 ACGSMETLNPTRKSKLQAGGDPRRVGRREKA 256
           AC + E ++  + S L+AG  P RVG +EKA
Sbjct: 606 ACETQEEVDSWKASFLRAGVYPERVGDKEKA 636



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>DYN1_MOUSE (P39053) Dynamin-1 (EC 3.6.5.5)|
          Length = 867

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -2

Query: 348 ACGSMETLNPTRKSKLQAGGDPRRVGRREKA 256
           AC + E ++  + S L+AG  P RVG +EKA
Sbjct: 606 ACETQEEVDSWKASFLRAGVYPERVGDKEKA 636


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,569,224
Number of Sequences: 219361
Number of extensions: 1015193
Number of successful extensions: 3335
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 3229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3331
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3362826254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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