ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl31c12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RGA7_SCHPO (O94466) Probable Rho-GTPase-activating protein 7 31 1.2
2ICP4_GAHVG (Q02362) Trans-acting transcriptional activator prote... 29 6.2
3PA2I_VIPAP (Q8JFG1) Phospholipase A2 inhibitor precursor (Vaspin... 28 8.1
4PA21B_VIPAZ (Q10754) Phospholipase A2, A chain precursor (Phosph... 28 8.1
5PA2I_VIPAE (P04084) Phospholipase A2 inhibitor (Vipoxin toxic co... 28 8.1

>RGA7_SCHPO (O94466) Probable Rho-GTPase-activating protein 7|
          Length = 695

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 20/63 (31%), Positives = 27/63 (42%)
 Frame = +3

Query: 156 PSAIPCSSTICPQLQSRFTSRLLSSLPGIGNDASTLLPKQTLDTSGSKSTLIKRPDESQQ 335
           PS  P  S   P   +  TS   ++       ASTL P    DT+GS S+    P  S  
Sbjct: 374 PSTFPNPSVASPAFPNSSTSNPSTAPASASPLASTLKPSTANDTNGSSSSSSSNPRTSSP 433

Query: 336 ISS 344
           ++S
Sbjct: 434 LAS 436



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>ICP4_GAHVG (Q02362) Trans-acting transcriptional activator protein ICP4|
           (Immediate-early protein IE175)
          Length = 1415

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = -3

Query: 430 EWPRPGPGK*CFSGQGGHGACYTDSFNEAELI 335
           E P P PG+  F G GGH    TDS    E I
Sbjct: 288 EVPLPPPGRCWFGGLGGHRQALTDSPEIVEAI 319



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>PA2I_VIPAP (Q8JFG1) Phospholipase A2 inhibitor precursor (Vaspin A chain)|
          Length = 138

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -3

Query: 373 ACYTDSFNEAELIC*DSSGLLISVLLEPEVSSVCLGSRVD 254
           A YT SF   +++C D+   L +V      +++CLG  V+
Sbjct: 78  ATYTYSFENGDIVCGDNDLCLRAVCECDRAAAICLGENVN 117



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>PA21B_VIPAZ (Q10754) Phospholipase A2, A chain precursor (Phospholipase A2|
           inhibitor) (PLA2-I complex A chain) (Vaspin A chain)
          Length = 138

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -3

Query: 373 ACYTDSFNEAELIC*DSSGLLISVLLEPEVSSVCLGSRVD 254
           A YT SF   +++C D+   L +V      +++CLG  V+
Sbjct: 78  ATYTYSFENGDIVCGDNDLCLRAVCECDRAAAICLGENVN 117



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>PA2I_VIPAE (P04084) Phospholipase A2 inhibitor (Vipoxin toxic component)|
           (Vipoxin A chain) (Inh)
          Length = 122

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -3

Query: 373 ACYTDSFNEAELIC*DSSGLLISVLLEPEVSSVCLGSRVD 254
           A YT SF   +++C D+   L +V      +++CLG  V+
Sbjct: 62  ATYTYSFENGDIVCGDNDLCLRAVCECDRAAAICLGENVN 101


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,285,828
Number of Sequences: 219361
Number of extensions: 1067764
Number of successful extensions: 2866
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2857
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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