ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl31c10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PANX1_PONPY (Q5REE3) Pannexin-1 31 1.3
2PANX1_HUMAN (Q96RD7) Pannexin-1 31 1.3
3PANX1_RAT (P60570) Pannexin-1 30 2.3
4PANX1_MOUSE (Q9JIP4) Pannexin-1 30 2.3
5EXOC2_CAEEL (Q22706) Probable exocyst complex component 2 (Exocy... 30 2.9

>PANX1_PONPY (Q5REE3) Pannexin-1|
          Length = 426

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +1

Query: 241 QLSRFQPSSFLWNPKAMMTVLCWMKILQMG*VAVEA-LLGCRLHCSYF*HQPDQCLLSES 417
           Q+S F PSSF W   A +   CW  + Q   +  E+  L   LH  +        LL  +
Sbjct: 63  QISCFSPSSFSWRQAAFVDSYCWAAVQQKNSLQSESGNLPLWLHKFF-----PYILLLFA 117

Query: 418 VQLYSRPLF 444
           + LY  PLF
Sbjct: 118 ILLYLPPLF 126



to top

>PANX1_HUMAN (Q96RD7) Pannexin-1|
          Length = 426

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +1

Query: 241 QLSRFQPSSFLWNPKAMMTVLCWMKILQMG*VAVEA-LLGCRLHCSYF*HQPDQCLLSES 417
           Q+S F PSSF W   A +   CW  + Q   +  E+  L   LH  +        LL  +
Sbjct: 63  QISCFSPSSFSWRQAAFVDSYCWAAVQQKNSLQSESGNLPLWLHKFF-----PYILLLFA 117

Query: 418 VQLYSRPLF 444
           + LY  PLF
Sbjct: 118 ILLYLPPLF 126



to top

>PANX1_RAT (P60570) Pannexin-1|
          Length = 426

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 241 QLSRFQPSSFLWNPKAMMTVLCWMKILQ 324
           Q+S F PSSF W   A +   CW  + Q
Sbjct: 63  QISCFSPSSFSWRQAAFVDSYCWAAVQQ 90



to top

>PANX1_MOUSE (Q9JIP4) Pannexin-1|
          Length = 426

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 241 QLSRFQPSSFLWNPKAMMTVLCWMKILQ 324
           Q+S F PSSF W   A +   CW  + Q
Sbjct: 63  QISCFSPSSFSWRQAAFVDSYCWAAVQQ 90



to top

>EXOC2_CAEEL (Q22706) Probable exocyst complex component 2 (Exocyst complex|
           component Sec5)
          Length = 884

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +2

Query: 308 G*RFCKWVKWPLRLSSAAVFTALIFSTSLINASFQNLFSCTHARCSIPL 454
           G +F KW   P  +S + +  +L  + SLI++  +N FS TH +  + L
Sbjct: 495 GDQFAKWPTVPADISRSNLQLSLKTTRSLISSLLENQFSLTHVQPLVEL 543


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,506,590
Number of Sequences: 219361
Number of extensions: 980976
Number of successful extensions: 2738
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2736
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top