No.
Definition
Score (bits)
E Value
1 ref|NM_196975.1| Oryza sativa (japonica cultivar-group) unknown ...
72
2e-09
2 gb|AC078948.11| Oryza sativa chromosome 10 BAC OSJNBa0001K12 gen...
72
2e-09
3 dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D...
72
2e-09
4 gb|AC069145.5|AC069145 Oryza sativa chromosome 10 BAC OSJNBb0094...
72
2e-09
5 dbj|AK073558.1| Oryza sativa (japonica cultivar-group) cDNA clon...
72
2e-09
6 dbj|AK067795.1| Oryza sativa (japonica cultivar-group) cDNA clon...
72
2e-09
7 gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome...
72
2e-09
8 dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D...
62
2e-06
9 dbj|AP005444.4| Oryza sativa (japonica cultivar-group) genomic D...
62
2e-06
10 dbj|AP006159.3| Oryza sativa (japonica cultivar-group) genomic D...
62
2e-06
11 dbj|AK105610.1| Oryza sativa (japonica cultivar-group) cDNA clon...
62
2e-06
12 dbj|AK070141.1| Oryza sativa (japonica cultivar-group) cDNA clon...
62
2e-06
13 gb|AC104286.11| Drosophila melanogaster X BAC RP98-13J2 (Roswell...
44
0.41
14 emb|AL050231.2|DMBR37P7 Drosophila melanogaster BAC clone BACR37P7
44
0.41
15 gb|AE003417.4| Drosophila melanogaster chromosome X, section 1 o...
44
0.41
16 gb|AC091402.2| Sus scrofa clone RP44-363K13, complete sequence
42
1.6
17 dbj|AB159447.1| Bombyx mori DNA, chromosome 13, clone:534E24, co...
42
1.6
18 gb|BC092015.1| Xenopus laevis cDNA clone MGC:84986 IMAGE:6325168...
42
1.6
19 emb|AL845280.4| Mouse DNA sequence from clone RP23-265L1 on chro...
42
1.6
20 gb|AC079938.3| Mus musculus strain C57BL6/J chromosome 5 clone R...
40
6.3
21 gb|AC005017.1| Homo sapiens BAC clone GS1-214N13 from 7, complet...
40
6.3
22 emb|BX323451.12| Zebrafish DNA sequence from clone DKEY-49H9 in ...
40
6.3
23 emb|BX664602.11| Zebrafish DNA sequence from clone DKEY-31C18 in...
40
6.3
24 gb|AC154873.6| Mus musculus chromosome 1, clone RP23-71J17, comp...
40
6.3
25 gb|AC092319.2| Homo sapiens chromosome 5 clone RP11-103L11, comp...
40
6.3
26 gb|AC073023.7| Homo sapiens chromosome 8, clone RP11-211F2, comp...
40
6.3
27 gb|AC068944.5| Homo sapiens BAC clone RP11-769N22 from 4, comple...
40
6.3
28 gb|AC018788.10| Homo sapiens chromosome , clone RP11-24E9, compl...
40
6.3
29 gb|AC091947.4| Homo sapiens chromosome 5 clone RP11-367F9, compl...
40
6.3
30 gb|AC098698.3| Papio anubis clone RP41-177A23, complete sequence
40
6.3
>gb|AC078948.11 | Oryza sativa chromosome 10 BAC OSJNBa0001K12 genomic sequence, complete
sequence
Length = 144724
Score = 71.9 bits (36), Expect = 2e-09
Identities = 106/128 (82%), Gaps = 1/128 (0%)
Strand = Plus / Minus
Query: 336 ggggatacatgtattctgtccatcaggtttaccttcggtgcctcaagaatcgcctttggg 395
||||||| ||||| |||||||||||||||||||| || || ||||| || ||||| ||
Sbjct: 122268 ggggataggtgtatcctgtccatcaggtttaccttgggggcatcaaggattgccttgggt 122209
Query: 396 ggtgacaatgcccactgcattgccc-aatagcaagaggccgcatgtataccagcgacctg 454
|| || |||||| |||||||||| ||| || |||||||||||||| | |||||||||
Sbjct: 122208 ggagaacgtgcccattgcattgcccaaatggcgagaggccgcatgtagatgagcgacctg 122149
Query: 455 taatgccc 462
|| |||||
Sbjct: 122148 tagtgccc 122141
Score = 40.1 bits (20), Expect = 6.3
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 51 tagttcactgtacaaattatacaacaaaagctcttt 86
||||| ||||||||| ||||||||||| ||||||||
Sbjct: 122583 tagtttactgtacaa-ttatacaacaagagctcttt 122549
Score = 40.1 bits (20), Expect = 6.3
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 146 tgaaccccactggatcttggaagggggcaaggagaagccg 185
|||||||||||| | |||| |||||| |||||| ||||||
Sbjct: 122470 tgaaccccactgaaacttgtaaggggccaaggaaaagccg 122431
>dbj|AP008216.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 71.9 bits (36), Expect = 2e-09
Identities = 106/128 (82%), Gaps = 1/128 (0%)
Strand = Plus / Plus
Query: 336 ggggatacatgtattctgtccatcaggtttaccttcggtgcctcaagaatcgcctttggg 395
||||||| ||||| |||||||||||||||||||| || || ||||| || ||||| ||
Sbjct: 17070068 ggggataggtgtatcctgtccatcaggtttaccttgggggcatcaaggattgccttgggt 17070127
Query: 396 ggtgacaatgcccactgcattgccc-aatagcaagaggccgcatgtataccagcgacctg 454
|| || |||||| |||||||||| ||| || |||||||||||||| | |||||||||
Sbjct: 17070128 ggagaacgtgcccattgcattgcccaaatggcgagaggccgcatgtagatgagcgacctg 17070187
Query: 455 taatgccc 462
|| |||||
Sbjct: 17070188 tagtgccc 17070195
Score = 40.1 bits (20), Expect = 6.3
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 146 tgaaccccactggatcttggaagggggcaaggagaagccg 185
|||||||||||| | |||| |||||| |||||| ||||||
Sbjct: 17069866 tgaaccccactgaaacttgtaaggggccaaggaaaagccg 17069905
Score = 40.1 bits (20), Expect = 6.3
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Plus
Query: 51 tagttcactgtacaaattatacaacaaaagctcttt 86
||||| ||||||||| ||||||||||| ||||||||
Sbjct: 17069753 tagtttactgtacaa-ttatacaacaagagctcttt 17069787
>gb|AC069145.5 |AC069145 Oryza sativa chromosome 10 BAC OSJNBb0094K03 genomic sequence, complete
sequence
Length = 135216
Score = 71.9 bits (36), Expect = 2e-09
Identities = 106/128 (82%), Gaps = 1/128 (0%)
Strand = Plus / Plus
Query: 336 ggggatacatgtattctgtccatcaggtttaccttcggtgcctcaagaatcgcctttggg 395
||||||| ||||| |||||||||||||||||||| || || ||||| || ||||| ||
Sbjct: 110560 ggggataggtgtatcctgtccatcaggtttaccttgggggcatcaaggattgccttgggt 110619
Query: 396 ggtgacaatgcccactgcattgccc-aatagcaagaggccgcatgtataccagcgacctg 454
|| || |||||| |||||||||| ||| || |||||||||||||| | |||||||||
Sbjct: 110620 ggagaacgtgcccattgcattgcccaaatggcgagaggccgcatgtagatgagcgacctg 110679
Query: 455 taatgccc 462
|| |||||
Sbjct: 110680 tagtgccc 110687
Score = 40.1 bits (20), Expect = 6.3
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 146 tgaaccccactggatcttggaagggggcaaggagaagccg 185
|||||||||||| | |||| |||||| |||||| ||||||
Sbjct: 110358 tgaaccccactgaaacttgtaaggggccaaggaaaagccg 110397
Score = 40.1 bits (20), Expect = 6.3
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Plus
Query: 51 tagttcactgtacaaattatacaacaaaagctcttt 86
||||| ||||||||| ||||||||||| ||||||||
Sbjct: 110245 tagtttactgtacaa-ttatacaacaagagctcttt 110279
>dbj|AK073558.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J033044N24, full
insert sequence
Length = 2884
Score = 71.9 bits (36), Expect = 2e-09
Identities = 106/128 (82%), Gaps = 1/128 (0%)
Strand = Plus / Minus
Query: 336 ggggatacatgtattctgtccatcaggtttaccttcggtgcctcaagaatcgcctttggg 395
||||||| ||||| |||||||||||||||||||| || || ||||| || ||||| ||
Sbjct: 2532 ggggataggtgtatcctgtccatcaggtttaccttgggggcatcaaggattgccttgggt 2473
Query: 396 ggtgacaatgcccactgcattgccc-aatagcaagaggccgcatgtataccagcgacctg 454
|| || |||||| |||||||||| ||| || |||||||||||||| | |||||||||
Sbjct: 2472 ggagaacgtgcccattgcattgcccaaatggcgagaggccgcatgtagatgagcgacctg 2413
Query: 455 taatgccc 462
|| |||||
Sbjct: 2412 tagtgccc 2405
Score = 40.1 bits (20), Expect = 6.3
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 51 tagttcactgtacaaattatacaacaaaagctcttt 86
||||| ||||||||| ||||||||||| ||||||||
Sbjct: 2847 tagtttactgtacaa-ttatacaacaagagctcttt 2813
Score = 40.1 bits (20), Expect = 6.3
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 146 tgaaccccactggatcttggaagggggcaaggagaagccg 185
|||||||||||| | |||| |||||| |||||| ||||||
Sbjct: 2734 tgaaccccactgaaacttgtaaggggccaaggaaaagccg 2695
>dbj|AK067795.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J013118D11, full
insert sequence
Length = 3716
Score = 71.9 bits (36), Expect = 2e-09
Identities = 106/128 (82%), Gaps = 1/128 (0%)
Strand = Plus / Minus
Query: 336 ggggatacatgtattctgtccatcaggtttaccttcggtgcctcaagaatcgcctttggg 395
||||||| ||||| |||||||||||||||||||| || || ||||| || ||||| ||
Sbjct: 3230 ggggataggtgtatcctgtccatcaggtttaccttgggggcatcaaggattgccttgggt 3171
Query: 396 ggtgacaatgcccactgcattgccc-aatagcaagaggccgcatgtataccagcgacctg 454
|| || |||||| |||||||||| ||| || |||||||||||||| | |||||||||
Sbjct: 3170 ggagaacgtgcccattgcattgcccaaatggcgagaggccgcatgtagatgagcgacctg 3111
Query: 455 taatgccc 462
|| |||||
Sbjct: 3110 tagtgccc 3103
Score = 40.1 bits (20), Expect = 6.3
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 51 tagttcactgtacaaattatacaacaaaagctcttt 86
||||| ||||||||| ||||||||||| ||||||||
Sbjct: 3545 tagtttactgtacaa-ttatacaacaagagctcttt 3511
Score = 40.1 bits (20), Expect = 6.3
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 146 tgaaccccactggatcttggaagggggcaaggagaagccg 185
|||||||||||| | |||| |||||| |||||| ||||||
Sbjct: 3432 tgaaccccactgaaacttgtaaggggccaaggaaaagccg 3393
>gb|AE016959.3 | Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 71.9 bits (36), Expect = 2e-09
Identities = 106/128 (82%), Gaps = 1/128 (0%)
Strand = Plus / Plus
Query: 336 ggggatacatgtattctgtccatcaggtttaccttcggtgcctcaagaatcgcctttggg 395
||||||| ||||| |||||||||||||||||||| || || ||||| || ||||| ||
Sbjct: 17079108 ggggataggtgtatcctgtccatcaggtttaccttgggggcatcaaggattgccttgggt 17079167
Query: 396 ggtgacaatgcccactgcattgccc-aatagcaagaggccgcatgtataccagcgacctg 454
|| || |||||| |||||||||| ||| || |||||||||||||| | |||||||||
Sbjct: 17079168 ggagaacgtgcccattgcattgcccaaatggcgagaggccgcatgtagatgagcgacctg 17079227
Query: 455 taatgccc 462
|| |||||
Sbjct: 17079228 tagtgccc 17079235
Score = 40.1 bits (20), Expect = 6.3
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 146 tgaaccccactggatcttggaagggggcaaggagaagccg 185
|||||||||||| | |||| |||||| |||||| ||||||
Sbjct: 17078906 tgaaccccactgaaacttgtaaggggccaaggaaaagccg 17078945
Score = 40.1 bits (20), Expect = 6.3
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Plus
Query: 51 tagttcactgtacaaattatacaacaaaagctcttt 86
||||| ||||||||| ||||||||||| ||||||||
Sbjct: 17078793 tagtttactgtacaa-ttatacaacaagagctcttt 17078827
>gb|AC098698.3 | Papio anubis clone RP41-177A23, complete sequence
Length = 165334
Score = 40.1 bits (20), Expect = 6.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 305 acctatctcactgactgctc 324
||||||||||||||||||||
Sbjct: 19016 acctatctcactgactgctc 18997
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,326,561
Number of Sequences: 3902068
Number of extensions: 4326561
Number of successful extensions: 78849
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78699
Number of HSP's gapped (non-prelim): 131
length of query: 469
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 447
effective length of database: 17,147,199,772
effective search space: 7664798298084
effective search space used: 7664798298084
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)