ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbastl31c05 |
|---|---|
| Clone Library Name | barley_pub |
>GAG_BAEVM (P03341) Gag polyprotein [Contains: Inner coat protein p12; Core| protein p15; Core shell protein p30; Nucleoprotein p10] Length = 536 Score = 32.7 bits (73), Expect = 0.21 Identities = 23/63 (36%), Positives = 27/63 (42%) Frame = -2 Query: 382 DHHHDLAVQPGVLGARAGQSSVARRRSRVGTFVSAGCPLRGHSDHQCPGLRGPLHPQGQW 203 D H + V RAG+S RRR +V A C RGH C P P+ Q Sbjct: 469 DKHLTKILAAVVTEKRAGKSGETRRRPKVDKDQCAYCKERGHWIKDC-----PKRPRDQK 523 Query: 202 KPA 194 KPA Sbjct: 524 KPA 526
>KNOB_PLAFA (P13817) Knob-associated histidine-rich protein precursor (KAHRP)| (HRPI) (Fragment) Length = 473 Score = 30.8 bits (68), Expect = 0.81 Identities = 15/47 (31%), Positives = 20/47 (42%) Frame = +1 Query: 250 DHYGHAEDSLQKQRSQPCCAFAQQNSAQPEHQARQVEQRDRGDDHKH 390 +H+ H Q Q P A + + HQA QV Q+ G D H Sbjct: 62 EHHHHHHHQHQHQHQAPHQAHHHHHHGEVNHQAPQVHQQVHGQDQAH 108
>KNOB_PLAFG (P09346) Knob-associated histidine-rich protein precursor (KAHRP)| (KP) Length = 634 Score = 30.8 bits (68), Expect = 0.81 Identities = 15/47 (31%), Positives = 20/47 (42%) Frame = +1 Query: 250 DHYGHAEDSLQKQRSQPCCAFAQQNSAQPEHQARQVEQRDRGDDHKH 390 +H+ H Q Q P A + + HQA QV Q+ G D H Sbjct: 62 EHHHHHHHQHQHQHQAPHQAHHHHHHGEVNHQAPQVHQQVHGQDQAH 108
>RXINP_MOUSE (Q5U5Q9) Retinoid X receptor-interacting protein 110| Length = 727 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/32 (46%), Positives = 17/32 (53%) Frame = +1 Query: 163 KAKGNEGDKIRQASTVPADEEGLVDRGIDDHY 258 KA GD RQ +PAD +GL D G HY Sbjct: 245 KAVQGRGDTSRQCLPIPADTKGLQDTGGTVHY 276
>KSR1_HUMAN (Q8IVT5) Kinase suppressor of ras-1 (Kinase suppressor of ras)| Length = 921 Score = 29.6 bits (65), Expect = 1.8 Identities = 12/38 (31%), Positives = 21/38 (55%) Frame = +1 Query: 187 KIRQASTVPADEEGLVDRGIDDHYGHAEDSLQKQRSQP 300 ++R+ +VP+D VDR + H+G +L K+ P Sbjct: 398 RLRRTESVPSDINNPVDRAAEPHFGTLPKALTKKEHPP 435
>GUNC_PSEFL (P27033) Endoglucanase C precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase) (Cellulase) (EGC) (Cellodextrinase C) Length = 748 Score = 29.6 bits (65), Expect = 1.8 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 6/70 (8%) Frame = +1 Query: 82 PNIPHSRLFIVSAPSSYLGSL*AERRH------KAKGNEGDKIRQASTVPADEEGLVDRG 243 PNIP RL +P +Y S+ +R+ + G EGD+ QA ++++G Sbjct: 577 PNIPKDRLLF--SPHTYGPSVFVQRQFMDPAQTECAGLEGDEAAQARCRIVINPTVLEQG 634 Query: 244 IDDHYGHAED 273 ++H+G+ + Sbjct: 635 WEEHFGYLRE 644
>KSR1_MOUSE (Q61097) Kinase suppressor of ras-1 (Kinase suppressor of ras)| (mKSR1) (Hb protein) Length = 873 Score = 29.6 bits (65), Expect = 1.8 Identities = 12/38 (31%), Positives = 21/38 (55%) Frame = +1 Query: 187 KIRQASTVPADEEGLVDRGIDDHYGHAEDSLQKQRSQP 300 ++R+ +VP+D VDR + H+G +L K+ P Sbjct: 386 RLRRTESVPSDINNPVDRAAEPHFGTLPKALTKKEHPP 423
>WDR50_ARATH (Q9FMU5) WD-repeat protein At5g14050| Length = 546 Score = 28.5 bits (62), Expect = 4.0 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 5/67 (7%) Frame = +1 Query: 124 SSYLGSL*AERRHKAKGNEG-DKIRQASTV----PADEEGLVDRGIDDHYGHAEDSLQKQ 288 S Y+ L R H AK N G D R S + +D++ D G+DD ED + K Sbjct: 163 SEYIARL---RAHHAKLNPGTDWARPDSQIVDGESSDDDDTQDGGVDDILRTNEDLVVKS 219 Query: 289 RSQPCCA 309 R CA Sbjct: 220 RGNKLCA 226
>FUS_CDVO (P12569) Fusion glycoprotein F0 precursor [Contains: Fusion| glycoprotein F2; Fusion glycoprotein F1] Length = 662 Score = 28.5 bits (62), Expect = 4.0 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%) Frame = -1 Query: 368 SRCSTWRAWCSGWAE-FCCAKAQQGWD 291 S C+ WC G A F C+KAQ WD Sbjct: 114 SHCTWLVLWCLGMASLFLCSKAQIHWD 140
>PRPU_MOUSE (Q91YR7) U5 snRNP-associated 102 kDa protein (U5-102 kDa protein)| Length = 941 Score = 28.1 bits (61), Expect = 5.3 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 7/85 (8%) Frame = +1 Query: 157 RHKAKGNE--GDKIRQASTVPADEEGLVDRGIDDHYGHA-----EDSLQKQRSQPCCAFA 315 RH G GD++++ D+E L D D+ G+A +K + +A Sbjct: 47 RHAPPGKRTVGDQMKKNQAADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYA 106 Query: 316 QQNSAQPEHQARQVEQRDRGDDHKH 390 + E + + EQR++ + K+ Sbjct: 107 ALDKRMDERRKERREQREKEEIEKY 131
>PRPU_HUMAN (O94906) U5 snRNP-associated 102 kDa protein (U5-102 kDa protein)| Length = 941 Score = 28.1 bits (61), Expect = 5.3 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 7/85 (8%) Frame = +1 Query: 157 RHKAKGNE--GDKIRQASTVPADEEGLVDRGIDDHYGHA-----EDSLQKQRSQPCCAFA 315 RH G GD++++ D+E L D D+ G+A +K + +A Sbjct: 47 RHAPPGKRTVGDQMKKNQAADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYA 106 Query: 316 QQNSAQPEHQARQVEQRDRGDDHKH 390 + E + + EQR++ + K+ Sbjct: 107 ALDKRMDERRKERREQREKEEIEKY 131
>AMPP1_STRLI (P0A3Z2) Xaa-Pro aminopeptidase 1 (EC 3.4.11.9) (Xaa-Pro| aminopeptidase I) (X-Pro aminopeptidase I) (Aminopeptidase P I) (APP) (PEPP I) (Aminoacylproline aminopeptidase I) Length = 490 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = -1 Query: 113 TMNRRECGMLGFEPYYEGHFETIYLYTR 30 T N+ E G+L EP +GH TIYL R Sbjct: 106 TGNQTEDGVLVMEPEGDGHAATIYLLPR 133
>AMPP1_STRCO (P0A3Z1) Xaa-Pro aminopeptidase 1 (EC 3.4.11.9) (Xaa-Pro| aminopeptidase I) (X-Pro aminopeptidase I) (Aminopeptidase P I) (APP) (PEPP I) (Aminoacylproline aminopeptidase I) Length = 490 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = -1 Query: 113 TMNRRECGMLGFEPYYEGHFETIYLYTR 30 T N+ E G+L EP +GH TIYL R Sbjct: 106 TGNQTEDGVLVMEPEGDGHAATIYLLPR 133
>TNNI_CHLNI (Q7M3Y3) Troponin I (TnI)| Length = 292 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/52 (25%), Positives = 26/52 (50%) Frame = +1 Query: 217 DEEGLVDRGIDDHYGHAEDSLQKQRSQPCCAFAQQNSAQPEHQARQVEQRDR 372 +EE R ++ Y ++ L++QR + ++ + E Q RQ E+ +R Sbjct: 67 EEEEAAARAAEEEYNRQQEELRRQRQE------EERQRREEEQRRQQEEEER 112
>TAT_HV2BE (P18098) TAT protein (Transactivating regulatory protein)| Length = 130 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%) Frame = +2 Query: 266 QRTACRNKGPNPAAPSRN---RTLPSPSTKHARLNSEIVVMIT 385 +RT + K P+P+AP ++ RT S TK + SE V+ T Sbjct: 83 RRTPRKTKTPSPSAPDKSISTRTGDSQPTKEQKKTSEATVVTT 125
>KNOB_PLAFN (P06719) Knob-associated histidine-rich protein precursor (KAHRP)| Length = 657 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/46 (30%), Positives = 18/46 (39%) Frame = +1 Query: 253 HYGHAEDSLQKQRSQPCCAFAQQNSAQPEHQARQVEQRDRGDDHKH 390 H+ H Q P A + + HQA QV Q+ G D H Sbjct: 67 HHHHHHHQHQAPHQAPHQAHHHHHHGEVNHQAPQVHQQVHGQDQAH 112
>BSL2_ARATH (Q9SJF0) Serine/threonine-protein phosphatase BSL2 (EC 3.1.3.16)| (BSU1-like protein 2) Length = 1088 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = -1 Query: 98 ECGMLGFEPYYEGHFETIYLYTRLC 24 EC M GFE + +GH T++ T C Sbjct: 989 ECVMDGFERFAQGHLITLFSATNYC 1013
>BSL3_ARATH (Q9SHS7) Serine/threonine-protein phosphatase BSL3 (EC 3.1.3.16)| (BSU1-like protein 3) Length = 715 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = -1 Query: 98 ECGMLGFEPYYEGHFETIYLYTRLC 24 EC M GFE + +GH T++ T C Sbjct: 637 ECVMDGFERFAQGHLITLFSATNYC 661
>ABTB2_MOUSE (Q7TQI7) Ankyrin repeat and BTB/POZ domain-containing protein 2| Length = 1024 Score = 27.3 bits (59), Expect = 9.0 Identities = 16/57 (28%), Positives = 26/57 (45%) Frame = +2 Query: 200 LPLSLRMKRAS*TGALMITMATQRTACRNKGPNPAAPSRNRTLPSPSTKHARLNSEI 370 L L + + S +++ +AT T C P P+ P +TLP+ H N E+ Sbjct: 787 LQLMFDILKTSKNDSVLQQLATIFTHCYGTSPIPSIPEIRKTLPARLDPHFLNNKEM 843
>LEPA_HAEIN (P43729) GTP-binding protein lepA| Length = 598 Score = 27.3 bits (59), Expect = 9.0 Identities = 21/54 (38%), Positives = 27/54 (50%) Frame = +1 Query: 46 IVSKCPS**GSKPNIPHSRLFIVSAPSSYLGSL*AERRHKAKGNEGDKIRQAST 207 IV+K P+ G PN P L I S +YLG + R +GDKI+ ST Sbjct: 176 IVAKIPAPEGD-PNAPLQALIIDSWFDNYLGVVSLVRIKNGVLRKGDKIKVMST 228
>LEPA_HAEI8 (Q4QPM8) GTP-binding protein lepA| Length = 598 Score = 27.3 bits (59), Expect = 9.0 Identities = 21/54 (38%), Positives = 27/54 (50%) Frame = +1 Query: 46 IVSKCPS**GSKPNIPHSRLFIVSAPSSYLGSL*AERRHKAKGNEGDKIRQAST 207 IV+K P+ G PN P L I S +YLG + R +GDKI+ ST Sbjct: 176 IVAKIPAPEGD-PNAPLQALIIDSWFDNYLGVVSLVRIKNGVLRKGDKIKVMST 228
>CYP9_CAEEL (Q09637) Peptidyl-prolyl cis-trans isomerase 9 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-9) Length = 309 Score = 27.3 bits (59), Expect = 9.0 Identities = 23/80 (28%), Positives = 29/80 (36%) Frame = +1 Query: 151 ERRHKAKGNEGDKIRQASTVPADEEGLVDRGIDDHYGHAEDSLQKQRSQPCCAFAQQNSA 330 + R K N GD R S DE G+ RG + F ++ SA Sbjct: 243 KNRDYKKENRGDSSR--SQPRRDENGITVRG-----------------RGGVRFRRERSA 283 Query: 331 QPEHQARQVEQRDRGDDHKH 390 PEH R + D HKH Sbjct: 284 TPEHWRRNAPTKWVHDSHKH 303
>ABTB2_RAT (O08764) Ankyrin repeat and BTB/POZ domain-containing protein 2| (Confluent 3Y1 cell-associated protein) (CCA3) Length = 1009 Score = 27.3 bits (59), Expect = 9.0 Identities = 16/57 (28%), Positives = 26/57 (45%) Frame = +2 Query: 200 LPLSLRMKRAS*TGALMITMATQRTACRNKGPNPAAPSRNRTLPSPSTKHARLNSEI 370 L L + + S +++ +AT T C P P+ P +TLP+ H N E+ Sbjct: 786 LQLMFDILKTSKNDSVLQQLATIFTHCYGTSPIPSIPEIRKTLPARLDPHFLNNKEM 842
>TAOK2_RAT (Q9JLS3) Serine/threonine-protein kinase TAO2 (EC 2.7.11.1) (Thousand| and one amino acid protein 2) Length = 1235 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/24 (45%), Positives = 13/24 (54%) Frame = +3 Query: 258 WPRRGQPAETKVPTLLRLRATELC 329 WPR+G P T+ P L R LC Sbjct: 1133 WPRQGNPRTTQHPLALLARVWALC 1156
>ABTB2_HUMAN (Q8N961) Ankyrin repeat and BTB/POZ domain-containing protein 2| Length = 839 Score = 27.3 bits (59), Expect = 9.0 Identities = 16/57 (28%), Positives = 26/57 (45%) Frame = +2 Query: 200 LPLSLRMKRAS*TGALMITMATQRTACRNKGPNPAAPSRNRTLPSPSTKHARLNSEI 370 L L + + S +++ +AT T C P P+ P +TLP+ H N E+ Sbjct: 602 LQLMFDILKTSKNDSVIQQLATIFTHCYGSSPIPSIPEIRKTLPARLDPHFLNNKEM 658
>LEPA_MANSM (Q65VN2) GTP-binding protein lepA| Length = 599 Score = 27.3 bits (59), Expect = 9.0 Identities = 21/54 (38%), Positives = 27/54 (50%) Frame = +1 Query: 46 IVSKCPS**GSKPNIPHSRLFIVSAPSSYLGSL*AERRHKAKGNEGDKIRQAST 207 IV+K P+ G PN P L I S +YLG + R +GDKI+ ST Sbjct: 176 IVAKIPAPKGD-PNAPLQALIIDSWFDNYLGVVSLVRVKNGVLRKGDKIKVMST 228
>MDM36_YEAST (Q06820) Mitochondrial distribution and morphology protein 36| Length = 579 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/39 (30%), Positives = 21/39 (53%) Frame = +1 Query: 247 DDHYGHAEDSLQKQRSQPCCAFAQQNSAQPEHQARQVEQ 363 D+H G+ +DS K S C +++S E +R ++Q Sbjct: 147 DNHNGNLDDSFYKDLSLKCIKKCEKSSLALESLSRDIDQ 185
>FGF16_RAT (O54769) Fibroblast growth factor 16 (FGF-16)| Length = 207 Score = 27.3 bits (59), Expect = 9.0 Identities = 22/83 (26%), Positives = 30/83 (36%) Frame = -2 Query: 367 LAVQPGVLGARAGQSSVARRRSRVGTFVSAGCPLRGHSDHQCPGLRGPLHPQGQWKPALF 188 LA PG L R GQ +R F LR + G + P G Sbjct: 27 LADSPGFLNERLGQIEGKLQRGSPTDFAHLKGILRRRQLYCRTGFHLEIFPNGTVHGTRH 86 Query: 187 CHPRFPLLCVVALPTGYLDMNSV 119 H RF +L ++L G + + V Sbjct: 87 DHSRFGILEFISLAVGLISIRGV 109
>FGF16_MOUSE (Q9ESL8) Fibroblast growth factor 16 (FGF-16)| Length = 207 Score = 27.3 bits (59), Expect = 9.0 Identities = 22/83 (26%), Positives = 30/83 (36%) Frame = -2 Query: 367 LAVQPGVLGARAGQSSVARRRSRVGTFVSAGCPLRGHSDHQCPGLRGPLHPQGQWKPALF 188 LA PG L R GQ +R F LR + G + P G Sbjct: 27 LADSPGFLNERLGQIEGKLQRGSPTDFAHLKGILRRRQLYCRTGFHLEIFPNGTVHGTRH 86 Query: 187 CHPRFPLLCVVALPTGYLDMNSV 119 H RF +L ++L G + + V Sbjct: 87 DHSRFGILEFISLAVGLISIRGV 109
>FGF16_HUMAN (O43320) Fibroblast growth factor 16 (FGF-16)| Length = 207 Score = 27.3 bits (59), Expect = 9.0 Identities = 22/83 (26%), Positives = 30/83 (36%) Frame = -2 Query: 367 LAVQPGVLGARAGQSSVARRRSRVGTFVSAGCPLRGHSDHQCPGLRGPLHPQGQWKPALF 188 LA PG L R GQ +R F LR + G + P G Sbjct: 27 LADSPGFLNERLGQIEGKLQRGSPTDFAHLKGILRRRQLYCRTGFHLEIFPNGTVHGTRH 86 Query: 187 CHPRFPLLCVVALPTGYLDMNSV 119 H RF +L ++L G + + V Sbjct: 87 DHSRFGILEFISLAVGLISIRGV 109 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,183,376 Number of Sequences: 219361 Number of extensions: 1090596 Number of successful extensions: 3671 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 3519 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3667 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 1365190992 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
