ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl31c05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467562.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.3
2gb|AE008988.1| Agrobacterium tumefaciens str. C58 circular chrom... 40 5.3
3gb|AC147044.2| Mus musculus BAC clone RP23-106B19 from chromosom... 40 5.3
4gb|AC114007.6| Mus musculus BAC clone RP23-187G1 from chromosome... 40 5.3
5gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome 40 5.3
6gb|AF432501.1|AF432501 Oryza sativa cellulose synthase-like prot... 40 5.3
7dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
8dbj|AP004179.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
9dbj|AK120054.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.3
10dbj|AK101487.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.3
11gb|AC007773.1|AC007773 Homo sapiens chromosome 19, BAC 275282 (C... 40 5.3
12dbj|AP002002.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 5.3 
>ref|XM_467562.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2154

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 207  tgtccctgcggatgaagagggcctcgtagaccggggcattgatg 250
            |||||||||||| |||||| ||||| || ||||| | |||||||
Sbjct: 2025 tgtccctgcggaggaagagcgcctcataaaccggagaattgatg 1982
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>gb|AE008988.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 14 of
            256 of the complete sequence
          Length = 7214

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 358  gaacagcgagatcgtggtgatgat 381
            ||||||||||||| ||||||||||
Sbjct: 3545 gaacagcgagatcatggtgatgat 3568
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>gb|AC147044.2| Mus musculus BAC clone RP23-106B19 from chromosome 14, complete sequence
          Length = 181146

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 266    cagaggacagcctgcagaaa 285
              ||||||||||||||||||||
Sbjct: 155630 cagaggacagcctgcagaaa 155611
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>gb|AC114007.6| Mus musculus BAC clone RP23-187G1 from chromosome 14, complete sequence
          Length = 203514

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 266   cagaggacagcctgcagaaa 285
             ||||||||||||||||||||
Sbjct: 10142 cagaggacagcctgcagaaa 10123
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>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome
          Length = 2841581

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 358    gaacagcgagatcgtggtgatgat 381
              ||||||||||||| ||||||||||
Sbjct: 144884 gaacagcgagatcatggtgatgat 144907
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>gb|AF432501.1|AF432501 Oryza sativa cellulose synthase-like protein OsCslE2 gene, complete
            cds
          Length = 6037

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 207  tgtccctgcggatgaagagggcctcgtagaccggggcattgatg 250
            |||||||||||| |||||| ||||| || ||||| | |||||||
Sbjct: 5488 tgtccctgcggaggaagagcgcctcataaaccggagaattgatg 5445
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                            
Query: 207      tgtccctgcggatgaagagggcctcgtagaccggggcattgatg 250
                |||||||||||| |||||| ||||| || ||||| | |||||||
Sbjct: 30172179 tgtccctgcggaggaagagcgcctcataaaccggagaattgatg 30172136
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>dbj|AP004179.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1124_G07
          Length = 93240

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                         
Query: 207   tgtccctgcggatgaagagggcctcgtagaccggggcattgatg 250
             |||||||||||| |||||| ||||| || ||||| | |||||||
Sbjct: 44883 tgtccctgcggaggaagagcgcctcataaaccggagaattgatg 44840
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>dbj|AK120054.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000L05, full
            insert sequence
          Length = 2508

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 207  tgtccctgcggatgaagagggcctcgtagaccggggcattgatg 250
            |||||||||||| |||||| ||||| || ||||| | |||||||
Sbjct: 2379 tgtccctgcggaggaagagcgcctcataaaccggagaattgatg 2336
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>dbj|AK101487.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033042D19, full
            insert sequence
          Length = 2346

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 207  tgtccctgcggatgaagagggcctcgtagaccggggcattgatg 250
            |||||||||||| |||||| ||||| || ||||| | |||||||
Sbjct: 2217 tgtccctgcggaggaagagcgcctcataaaccggagaattgatg 2174
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>gb|AC007773.1|AC007773 Homo sapiens chromosome 19, BAC 275282 (CIT-B-325L16), complete
             sequence
          Length = 180316

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 265   gcagaggacagcctgcagaa 284
             ||||||||||||||||||||
Sbjct: 93953 gcagaggacagcctgcagaa 93934
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>dbj|AP002002.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-692F4, complete
             sequence
          Length = 112270

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 118   gcaccgagttcatatctaggtagc 141
             |||||||||||||||| |||||||
Sbjct: 27294 gcaccgagttcatatccaggtagc 27271


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,882,678
Number of Sequences: 3902068
Number of extensions: 2882678
Number of successful extensions: 51463
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51424
Number of HSP's gapped (non-prelim): 39
length of query: 398
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 376
effective length of database: 17,147,199,772
effective search space: 6447347114272
effective search space used: 6447347114272
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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