>MSH2_MAIZE (Q9XGC9) DNA mismatch repair protein MSH2 (MUS1)|
          Length = 942

 Score =  136 bits (343), Expect = 2e-32
 Identities = 65/90 (72%), Positives = 75/90 (83%)
 Frame = -3

Query: 456  LAKSKAEELEDFTSAPNLSGEPSDEVGSKRKRVFSPDDVTRGAARARLLLEDFAALPLDE 277
            LAKSKA ELEDF++ P  S +  DEVGSKRKRVFSPDD+TRGAARARL LE+FAALP+DE
Sbjct: 852  LAKSKAAELEDFSTTPTFSDDLKDEVGSKRKRVFSPDDITRGAARARLFLEEFAALPMDE 911

Query: 276  VDGSKATEMVAKLKSDFEKDAASNPWLHQF 187
            +DGSK  EM  K+K+D +KDAA NPWL QF
Sbjct: 912  MDGSKILEMATKMKADLQKDAADNPWLQQF 941

>MSH2_ARATH (O24617) DNA mismatch repair protein MSH2 (AtMsh2)|
          Length = 937

 Score = 77.0 bits (188), Expect = 2e-14
 Identities = 39/91 (42%), Positives = 60/91 (65%)
 Frame = -3

Query: 456  LAKSKAEELEDFTSAPNLSGEPSDEVGSKRKRVFSPDDVTRGAARARLLLEDFAALPLDE 277
            LA+ KA ELEDF+ +  +    ++E G ++ R   PD+V+RGA RA   L++FAA+PLD+
Sbjct: 849  LAREKAAELEDFSPSSMIIN--NEESGKRKSREDDPDEVSRGAERAHKFLKEFAAIPLDK 906

Query: 276  VDGSKATEMVAKLKSDFEKDAASNPWLHQFL 184
            ++   + + V ++K + EKDAA   WL QFL
Sbjct: 907  MELKDSLQRVREMKDELEKDAADCHWLRQFL 937

>MSH2_NEUCR (O13396) DNA mismatch repair protein msh-2|
          Length = 937

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
 Frame = -3

Query: 456  LAKSKAEELEDFTSAPNLSGEPSDEVGSKRKRVFSPDDVTRGAARARLLLEDFAALPLDE 277
            +AK KA+ELEDFTS      +  +E G      +S  DV  G+A    LL+D      DE
Sbjct: 851  MAKRKADELEDFTS------KHEEENGGGLGVQYSKQDVEEGSA----LLKDVLVKWKDE 900

Query: 276  VDGSKAT--EMVAKLKSDFEKD 217
            V   + +  EMVA+LK   +KD
Sbjct: 901  VKSGRMSKEEMVARLKELVQKD 922

>YNCA_CAEEL (P34544) Hypothetical protein R05D3.11 in chromosome III|
          Length = 1327

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -3

Query: 423 FTSAPNLSGEPSDEVGSKRKRVFS 352
           + SAP + GEP  EV S++K VFS
Sbjct: 553 YVSAPTMPGEPGYEVASEKKSVFS 576

>HR4_DROME (Q9W539) Hormone receptor 4 (dHR4)|
          Length = 1518

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 23/78 (29%), Positives = 29/78 (37%)
 Frame = +2

Query: 209 LAASFSKSDFSLATISVALLPSTSSRGXXXXXXXXXXXXXXPLVTSSGLNTLLRFDPTSS 388
           L A+ S    SLA + VA +  T   G              P V++S          TSS
Sbjct: 92  LTAASSAVTVSLAAV-VAAVAETGGAGAGGAGTAVTASGAGPCVSTSSTTAAAATSSTSS 150

Query: 389 LGSPLKLGALVKSSNSSA 442
           L S     +   SS SSA
Sbjct: 151 LSSSSSSSSSTSSSTSSA 168

>YDM6_SCHPO (P87137) Hypothetical protein C57A7.06 in chromosome I|
          Length = 929

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
 Frame = -3

Query: 429 EDFTSAPNLSGEPSDEVGSKR-KRVFSPDDVTRGAA---RARLLLEDFAALPLDEVD--- 271
           ED TS     G P   +G+   +R F P +     +   R    + D A L +++ +   
Sbjct: 617 EDDTSQKGEDGVPGVLIGNNTGRRSFKPSEEAAKLSLPSRKNPFVSDSAVLKVNKPEMKE 676

Query: 270 GSKATEMVAKLKSDFEKDAASNPWL 196
           G K  E   K +S  E    +NPWL
Sbjct: 677 GQKKAEARKKKESPLEATEETNPWL 701

>MAP1B_HUMAN (P46821) Microtubule-associated protein 1B (MAP 1B) [Contains: MAP1|
           light chain LC1]
          Length = 2468

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = -3

Query: 393 PSDEVGSKRKRVFSPDDVTRGAARARLLLEDFAALPLDEVDGSKATEMVAKLKSDFEKDA 214
           P+ E+ ++R  + SP+D+T+          DF  L  +EVD +K  +   +L  D EK  
Sbjct: 819 PAKELEAERSLMSSPEDLTK----------DFEELKAEEVDVTKDIKPQLELIEDEEKLK 868

Query: 213 ASNP 202
            + P
Sbjct: 869 ETEP 872

>AGA1_YEAST (P32323) A-agglutinin attachment subunit precursor|
          Length = 725

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
 Frame = +2

Query: 212 AASFSKSDFSLATISVALLPSTSSRGXXXXXXXXXXXXXXPLVTSSGLNTLLRFDPTSS- 388
           + S S S  S ++ S +  PS+ S                P +TSS   TL    P+S+ 
Sbjct: 258 STSTSPSSTSTSSSSTSTSPSSKSTSASSTSTSSYSTSTSPSLTSSS-PTLASTSPSSTS 316

Query: 389 -----LGSPLKLGALVKSSNSSALLFA 454
                  S   LG+ + SS++S  L++
Sbjct: 317 ISSTFTDSTSSLGSSIASSSTSVSLYS 343

>MAP1B_RAT (P15205) Microtubule-associated protein 1B (MAP 1B) (Neuraxin)|
           [Contains: MAP1 light chain LC1]
          Length = 2459

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = -3

Query: 393 PSDEVGSKRKRVFSPDDVTRGAARARLLLEDFAALPLDEVDGSKATEMVAKLKSDFEKDA 214
           P+ E+ ++R  + SP+D+T+          DF  L  +E+D +K  +   +L  D EK  
Sbjct: 811 PAKELEAERSLMSSPEDLTK----------DFEELKAEEIDVAKDIKPQLELIEDEEKLK 860

Query: 213 ASNP 202
            + P
Sbjct: 861 ETEP 864

>SRP19_MOUSE (Q9D7A6) Signal recognition particle 19 kDa protein (SRP19)|
          Length = 144

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
 Frame = -3

Query: 441 AEELEDFTSAPNLSGEPSDEVGSKRKRVFSPDDVTRGAARARLLLEDFAALPLDEVDGSK 262
           A E++D  SA  L+     E      R ++ D   RG  R +L  ED  +L L +    K
Sbjct: 46  ATEIQDVCSAVGLNAFL--EKNKMYSREWNRDVQFRGRVRVQLKQED-GSLCLVQFPSRK 102

Query: 261 AT-----EMVAKLKSDFEKDAASNPWLHQ 190
           +      EM+ KLK+  +K   ++P L Q
Sbjct: 103 SVMLYVAEMIPKLKTRTQKSGGADPILQQ 131


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,178,852
Number of Sequences: 219361
Number of extensions: 1013947
Number of successful extensions: 2563
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2560
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)