ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl31c01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1THYG_RAT (P06882) Thyroglobulin precursor 30 3.9
2HRG_HUMAN (P04196) Histidine-rich glycoprotein precursor (Histid... 30 3.9
3THYG_MOUSE (O08710) Thyroglobulin precursor 30 3.9

>THYG_RAT (P06882) Thyroglobulin precursor|
          Length = 2768

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 182  RTPTPPQIKLLCHYVDVTIP 241
            RTPTPPQI   C Y++V +P
Sbjct: 2271 RTPTPPQISEDCLYLNVFVP 2290



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>HRG_HUMAN (P04196) Histidine-rich glycoprotein precursor|
           (Histidine-proline-rich glycoprotein) (HPRG)
          Length = 525

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 7/67 (10%)
 Frame = +1

Query: 121 HQKNLSSPHSRCYYFYCTHSTNPHPTTNKVTLPLCGRDNPYG-------PKNNHPRGSKL 279
           H  N S  H   ++ +  H    HP  +        R +P+G       P  +HP G   
Sbjct: 342 HNNNSSDLHPHKHHSHEQHPHGHHPHAHHPHEHDTHRQHPHGHHPHGHHPHGHHPHGHHP 401

Query: 280 QGENSHC 300
            G + HC
Sbjct: 402 HGHHPHC 408



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>THYG_MOUSE (O08710) Thyroglobulin precursor|
          Length = 2766

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 182  RTPTPPQIKLLCHYVDVTIP 241
            RTPTPPQI   C Y++V +P
Sbjct: 2269 RTPTPPQINEDCLYLNVFVP 2288


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,178,366
Number of Sequences: 219361
Number of extensions: 861423
Number of successful extensions: 1887
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1887
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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