Clone Name | rbastl31c01 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | THYG_RAT (P06882) Thyroglobulin precursor | 30 | 3.9 | 2 | HRG_HUMAN (P04196) Histidine-rich glycoprotein precursor (Histid... | 30 | 3.9 | 3 | THYG_MOUSE (O08710) Thyroglobulin precursor | 30 | 3.9 |
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>THYG_RAT (P06882) Thyroglobulin precursor| Length = 2768 Score = 29.6 bits (65), Expect = 3.9 Identities = 12/20 (60%), Positives = 15/20 (75%) Frame = +2 Query: 182 RTPTPPQIKLLCHYVDVTIP 241 RTPTPPQI C Y++V +P Sbjct: 2271 RTPTPPQISEDCLYLNVFVP 2290
>HRG_HUMAN (P04196) Histidine-rich glycoprotein precursor| (Histidine-proline-rich glycoprotein) (HPRG) Length = 525 Score = 29.6 bits (65), Expect = 3.9 Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 7/67 (10%) Frame = +1 Query: 121 HQKNLSSPHSRCYYFYCTHSTNPHPTTNKVTLPLCGRDNPYG-------PKNNHPRGSKL 279 H N S H ++ + H HP + R +P+G P +HP G Sbjct: 342 HNNNSSDLHPHKHHSHEQHPHGHHPHAHHPHEHDTHRQHPHGHHPHGHHPHGHHPHGHHP 401 Query: 280 QGENSHC 300 G + HC Sbjct: 402 HGHHPHC 408
>THYG_MOUSE (O08710) Thyroglobulin precursor| Length = 2766 Score = 29.6 bits (65), Expect = 3.9 Identities = 12/20 (60%), Positives = 15/20 (75%) Frame = +2 Query: 182 RTPTPPQIKLLCHYVDVTIP 241 RTPTPPQI C Y++V +P Sbjct: 2269 RTPTPPQINEDCLYLNVFVP 2288 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,178,366 Number of Sequences: 219361 Number of extensions: 861423 Number of successful extensions: 1887 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 1868 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1887 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)