Clone Name | rbastl31b11 |
---|---|
Clone Library Name | barley_pub |
>gb|U56406.1|HVU56406 Hordeum vulgare methyljasmonate-inducible lipoxygenase 2 mRNA, complete cds Length = 3054 Score = 182 bits (92), Expect = 2e-43 Identities = 95/96 (98%) Strand = Plus / Minus Query: 28 catcgtgtcctttaattataatttggggctcattcccattatacccaccgccgggccaag 87 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 3034 catcgtgtcctttaattataatttggtgctcattcccattatacccaccgccgggccaag 2975 Query: 88 agactgaagacactcttatttacgcctagttgagtt 123 |||||||||||||||||||||||||||||||||||| Sbjct: 2974 agactgaagacactcttatttacgcctagttgagtt 2939 Score = 58.0 bits (29), Expect = 9e-06 Identities = 29/29 (100%) Strand = Plus / Minus Query: 137 aggcagctcaaatggagatgctgttgggg 165 ||||||||||||||||||||||||||||| Sbjct: 2923 aggcagctcaaatggagatgctgttgggg 2895
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 50.1 bits (25), Expect = 0.002 Identities = 25/25 (100%) Strand = Plus / Minus Query: 141 agctcaaatggagatgctgttgggg 165 ||||||||||||||||||||||||| Sbjct: 22970463 agctcaaatggagatgctgttgggg 22970439 Score = 38.2 bits (19), Expect = 8.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 143 ctcaaatggagatgctgttgggg 165 ||||||| ||||||||||||||| Sbjct: 22888635 ctcaaattgagatgctgttgggg 22888657
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 50.1 bits (25), Expect = 0.002 Identities = 25/25 (100%) Strand = Plus / Minus Query: 141 agctcaaatggagatgctgttgggg 165 ||||||||||||||||||||||||| Sbjct: 22898654 agctcaaatggagatgctgttgggg 22898630 Score = 38.2 bits (19), Expect = 8.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 143 ctcaaatggagatgctgttgggg 165 ||||||| ||||||||||||||| Sbjct: 22816826 ctcaaattgagatgctgttgggg 22816848
>emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155568 Score = 50.1 bits (25), Expect = 0.002 Identities = 25/25 (100%) Strand = Plus / Minus Query: 141 agctcaaatggagatgctgttgggg 165 ||||||||||||||||||||||||| Sbjct: 79740 agctcaaatggagatgctgttgggg 79716
>emb|AJ507213.1|HVU507213 Hordeum vulgare mRNA for lipoxygenase 2 (lox2:Hv:3 gene) Length = 2967 Score = 44.1 bits (22), Expect = 0.13 Identities = 22/22 (100%) Strand = Plus / Minus Query: 144 tcaaatggagatgctgttgggg 165 |||||||||||||||||||||| Sbjct: 2774 tcaaatggagatgctgttgggg 2753
>emb|AL596224.10| Human DNA sequence from clone RP11-26F12 on chromosome 1 Contains part of the CSMD2 gene for CUB and Sushi multiple domains 2, complete sequence Length = 114784 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 gtgtcctttaattataattt 51 |||||||||||||||||||| Sbjct: 67048 gtgtcctttaattataattt 67029
>gb|BT008992.1| Triticum aestivum clone wdk2c.pk011.j13:fis, full insert mRNA sequence Length = 1020 Score = 40.1 bits (20), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 142 gctcaaatggagatgctgttgggg 165 ||||| |||||||||||||||||| Sbjct: 755 gctcagatggagatgctgttgggg 732
>gb|AF465643.1| Zea mays B73 lipoxygenase gene, complete cds Length = 5013 Score = 40.1 bits (20), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 142 gctcaaatggagatgctgttgggg 165 ||||| |||||||||||||||||| Sbjct: 4664 gctcagatggagatgctgttgggg 4641
>gb|AF149803.1|AF149803 Zea mays lipoxygenase mRNA, lipoxygenase-L2 allele, partial cds Length = 2267 Score = 40.1 bits (20), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 142 gctcaaatggagatgctgttgggg 165 ||||| |||||||||||||||||| Sbjct: 2066 gctcagatggagatgctgttgggg 2043
>ref|XM_469412.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2686 Score = 38.2 bits (19), Expect = 8.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 143 ctcaaatggagatgctgttgggg 165 |||| |||||||||||||||||| Sbjct: 2447 ctcagatggagatgctgttgggg 2425
>ref|XM_469411.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3165 Score = 38.2 bits (19), Expect = 8.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 143 ctcaaatggagatgctgttgggg 165 |||| |||||||||||||||||| Sbjct: 2926 ctcagatggagatgctgttgggg 2904
>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16 map S2606, complete sequence Length = 124140 Score = 38.2 bits (19), Expect = 8.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 143 ctcaaatggagatgctgttgggg 165 |||| |||||||||||||||||| Sbjct: 65817 ctcagatggagatgctgttgggg 65795
>gb|AC123599.6| Mus musculus chromosome 5, clone RP23-231D13, complete sequence Length = 191607 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 58 cattcccattatacccacc 76 ||||||||||||||||||| Sbjct: 7126 cattcccattatacccacc 7144
>gb|AC007889.9| Drosophila melanogaster clone BACR48E12, complete sequence Length = 182182 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 139 gcagctcaaatggagatgc 157 ||||||||||||||||||| Sbjct: 149164 gcagctcaaatggagatgc 149182
>gb|AC007692.5| Drosophila melanogaster clone BACR06O05, complete sequence Length = 184662 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 139 gcagctcaaatggagatgc 157 ||||||||||||||||||| Sbjct: 66627 gcagctcaaatggagatgc 66645
>gb|AC102688.10| Mus musculus chromosome 5, clone RP24-138J15, complete sequence Length = 166655 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 58 cattcccattatacccacc 76 ||||||||||||||||||| Sbjct: 110263 cattcccattatacccacc 110281
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 38.2 bits (19), Expect = 8.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 143 ctcaaatggagatgctgttgggg 165 |||| |||||||||||||||||| Sbjct: 27821687 ctcagatggagatgctgttgggg 27821665 Score = 38.2 bits (19), Expect = 8.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 143 ctcaaatggagatgctgttgggg 165 ||||||||| ||||||||||||| Sbjct: 14300017 ctcaaatggtgatgctgttgggg 14300039
>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA sequence Length = 1129 Score = 38.2 bits (19), Expect = 8.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 143 ctcaaatggagatgctgttgggg 165 |||| |||||||||||||||||| Sbjct: 907 ctcagatggagatgctgttgggg 885
>emb|AJ270938.1|OSA270938 Oryza sativa mRNA for lipoxygenase (rci-1 gene) Length = 3018 Score = 38.2 bits (19), Expect = 8.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 143 ctcaaatggagatgctgttgggg 165 ||||||| ||||||||||||||| Sbjct: 2817 ctcaaattgagatgctgttgggg 2795
>emb|AL671969.39| Mouse DNA sequence from clone RP23-339O7 on chromosome 11 Contains part of a novel gene and the Nmu2r gene for neuromedin U receptor 2, complete sequence Length = 118473 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 148 atggagatgctgttggggg 166 ||||||||||||||||||| Sbjct: 52540 atggagatgctgttggggg 52558
>gb|AC106810.2| Homo sapiens chromosome 5 clone RP11-549K20, complete sequence Length = 91853 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 38 tttaattataatttggggc 56 ||||||||||||||||||| Sbjct: 14934 tttaattataatttggggc 14916
>gb|AC025189.5| Homo sapiens chromosome 5 clone RP11-43F23, complete sequence Length = 156861 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 38 tttaattataatttggggc 56 ||||||||||||||||||| Sbjct: 14890 tttaattataatttggggc 14908
>gb|DQ389164.1| Oryza sativa (japonica cultivar-group) dual positional specificity lipoxygenase mRNA, complete cds Length = 3154 Score = 38.2 bits (19), Expect = 8.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 143 ctcaaatggagatgctgttgggg 165 |||| |||||||||||||||||| Sbjct: 2920 ctcagatggagatgctgttgggg 2898
>gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete sequence Length = 158714 Score = 38.2 bits (19), Expect = 8.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 143 ctcaaatggagatgctgttgggg 165 ||||||||| ||||||||||||| Sbjct: 49246 ctcaaatggtgatgctgttgggg 49268
>gb|AC144427.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAb0012F18, complete sequence Length = 122159 Score = 38.2 bits (19), Expect = 8.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 143 ctcaaatggagatgctgttgggg 165 ||||||||| ||||||||||||| Sbjct: 111405 ctcaaatggtgatgctgttgggg 111427
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 38.2 bits (19), Expect = 8.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 143 ctcaaatggagatgctgttgggg 165 |||| |||||||||||||||||| Sbjct: 27913011 ctcagatggagatgctgttgggg 27912989 Score = 38.2 bits (19), Expect = 8.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 143 ctcaaatggagatgctgttgggg 165 ||||||||| ||||||||||||| Sbjct: 14294992 ctcaaatggtgatgctgttgggg 14295014
>gb|AF271894.1|AF271894 Zea mays lipoxygenase (LOX) mRNA, complete cds Length = 2845 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 143 ctcaaatggagatgctgtt 161 ||||||||||||||||||| Sbjct: 2623 ctcaaatggagatgctgtt 2605
>dbj|AK105792.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H08, full insert sequence Length = 1560 Score = 38.2 bits (19), Expect = 8.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 143 ctcaaatggagatgctgttgggg 165 |||| |||||||||||||||||| Sbjct: 1333 ctcagatggagatgctgttgggg 1311
>dbj|AK072869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143O17, full insert sequence Length = 2851 Score = 38.2 bits (19), Expect = 8.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 143 ctcaaatggagatgctgttgggg 165 |||| |||||||||||||||||| Sbjct: 2598 ctcagatggagatgctgttgggg 2576
>dbj|AK072689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143H13, full insert sequence Length = 3167 Score = 38.2 bits (19), Expect = 8.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 143 ctcaaatggagatgctgttgggg 165 |||| |||||||||||||||||| Sbjct: 2928 ctcagatggagatgctgttgggg 2906
>dbj|AK072241.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002P20, full insert sequence Length = 3080 Score = 38.2 bits (19), Expect = 8.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 143 ctcaaatggagatgctgttgggg 165 ||||||| ||||||||||||||| Sbjct: 2836 ctcaaattgagatgctgttgggg 2814
>dbj|AK071121.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079P11, full insert sequence Length = 1726 Score = 38.2 bits (19), Expect = 8.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 143 ctcaaatggagatgctgttgggg 165 |||| |||||||||||||||||| Sbjct: 1498 ctcagatggagatgctgttgggg 1476
>dbj|AK066737.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013079G10, full insert sequence Length = 2747 Score = 38.2 bits (19), Expect = 8.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 143 ctcaaatggagatgctgttgggg 165 ||||||| ||||||||||||||| Sbjct: 2343 ctcaaattgagatgctgttgggg 2321
>gb|AY111869.1| Zea mays CL452_-8 mRNA sequence Length = 568 Score = 38.2 bits (19), Expect = 8.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 142 gctcaaatggagatgctgttggg 164 ||||| ||||||||||||||||| Sbjct: 369 gctcatatggagatgctgttggg 347
>emb|CR753890.27| Zebrafish DNA sequence from clone CH211-207D8 in linkage group 9, complete sequence Length = 201771 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 33 tgtcctttaattataattt 51 ||||||||||||||||||| Sbjct: 125206 tgtcctttaattataattt 125224
>gb|AY103567.1| Zea mays PCO116252 mRNA sequence Length = 3135 Score = 38.2 bits (19), Expect = 8.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 142 gctcaaatggagatgctgttggg 164 ||||| ||||||||||||||||| Sbjct: 2902 gctcatatggagatgctgttggg 2880
>gb|AE003694.4| Drosophila melanogaster chromosome 3R, section 32 of 118 of the complete sequence Length = 226075 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 139 gcagctcaaatggagatgc 157 ||||||||||||||||||| Sbjct: 75588 gcagctcaaatggagatgc 75606
>emb|AL935070.3|CNS08CCM Oryza sativa chromosome 12, . BAC OSJNBa0040P10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 148705 Score = 38.2 bits (19), Expect = 8.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 143 ctcaaatggagatgctgttgggg 165 ||||||| ||||||||||||||| Sbjct: 68209 ctcaaattgagatgctgttgggg 68187 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,069,673 Number of Sequences: 3902068 Number of extensions: 1069673 Number of successful extensions: 76141 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75954 Number of HSP's gapped (non-prelim): 187 length of query: 168 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 146 effective length of database: 17,147,199,772 effective search space: 2503491166712 effective search space used: 2503491166712 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)