Clone Name | rbastl31b08 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 54.0 bits (27), Expect = 3e-04 Identities = 82/99 (82%), Gaps = 1/99 (1%) Strand = Plus / Plus Query: 45 gataaatagtgaaatgtatgcttgatcactattggaaaaataccattctataatgtgctg 104 |||||||||||| | ||| ||||| |||||||||| || | |||| |||||| | ||| Sbjct: 23529213 gataaatagtgaggtatatccttgagcactattggacaa-tgccatactataacttactg 23529271 Query: 105 caactttgcagaatgtaattaaaacactttgaaggcaaa 143 |||||||||| |||||||| || |||||||||||||| Sbjct: 23529272 gaactttgcaggatgtaattgaagtactttgaaggcaaa 23529310 Score = 44.1 bits (22), Expect = 0.31 Identities = 39/45 (86%) Strand = Plus / Plus Query: 308 tcaccgtaaatcctgcgaatagtanacatgcgggtttatgtaacc 352 ||||||||||| |||||||||||| || |||||||||||||| Sbjct: 23529497 tcaccgtaaattctgcgaatagtagaccgatgggtttatgtaacc 23529541
>dbj|AK120756.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007B14, full insert sequence Length = 4434 Score = 54.0 bits (27), Expect = 3e-04 Identities = 82/99 (82%), Gaps = 1/99 (1%) Strand = Plus / Minus Query: 45 gataaatagtgaaatgtatgcttgatcactattggaaaaataccattctataatgtgctg 104 |||||||||||| | ||| ||||| |||||||||| || | |||| |||||| | ||| Sbjct: 4410 gataaatagtgaggtatatccttgagcactattggacaa-tgccatactataacttactg 4352 Query: 105 caactttgcagaatgtaattaaaacactttgaaggcaaa 143 |||||||||| |||||||| || |||||||||||||| Sbjct: 4351 gaactttgcaggatgtaattgaagtactttgaaggcaaa 4313 Score = 44.1 bits (22), Expect = 0.31 Identities = 39/45 (86%) Strand = Plus / Minus Query: 308 tcaccgtaaatcctgcgaatagtanacatgcgggtttatgtaacc 352 ||||||||||| |||||||||||| || |||||||||||||| Sbjct: 4126 tcaccgtaaattctgcgaatagtagaccgatgggtttatgtaacc 4082
>dbj|AK100883.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127M15, full insert sequence Length = 4644 Score = 54.0 bits (27), Expect = 3e-04 Identities = 82/99 (82%), Gaps = 1/99 (1%) Strand = Plus / Minus Query: 45 gataaatagtgaaatgtatgcttgatcactattggaaaaataccattctataatgtgctg 104 |||||||||||| | ||| ||||| |||||||||| || | |||| |||||| | ||| Sbjct: 4643 gataaatagtgaggtatatccttgagcactattggacaa-tgccatactataacttactg 4585 Query: 105 caactttgcagaatgtaattaaaacactttgaaggcaaa 143 |||||||||| |||||||| || |||||||||||||| Sbjct: 4584 gaactttgcaggatgtaattgaagtactttgaaggcaaa 4546 Score = 44.1 bits (22), Expect = 0.31 Identities = 39/45 (86%) Strand = Plus / Minus Query: 308 tcaccgtaaatcctgcgaatagtanacatgcgggtttatgtaacc 352 ||||||||||| |||||||||||| || |||||||||||||| Sbjct: 4359 tcaccgtaaattctgcgaatagtagaccgatgggtttatgtaacc 4315
>emb|AL606441.3|OSJN00012 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089K21, complete sequence Length = 139298 Score = 54.0 bits (27), Expect = 3e-04 Identities = 82/99 (82%), Gaps = 1/99 (1%) Strand = Plus / Plus Query: 45 gataaatagtgaaatgtatgcttgatcactattggaaaaataccattctataatgtgctg 104 |||||||||||| | ||| ||||| |||||||||| || | |||| |||||| | ||| Sbjct: 85116 gataaatagtgaggtatatccttgagcactattggacaa-tgccatactataacttactg 85174 Query: 105 caactttgcagaatgtaattaaaacactttgaaggcaaa 143 |||||||||| |||||||| || |||||||||||||| Sbjct: 85175 gaactttgcaggatgtaattgaagtactttgaaggcaaa 85213 Score = 44.1 bits (22), Expect = 0.31 Identities = 39/45 (86%) Strand = Plus / Plus Query: 308 tcaccgtaaatcctgcgaatagtanacatgcgggtttatgtaacc 352 ||||||||||| |||||||||||| || |||||||||||||| Sbjct: 85400 tcaccgtaaattctgcgaatagtagaccgatgggtttatgtaacc 85444
>gb|AC101661.7| Mus musculus chromosome 1, clone RP23-26A10, complete sequence Length = 228933 Score = 44.1 bits (22), Expect = 0.31 Identities = 28/30 (93%) Strand = Plus / Minus Query: 150 tgtacctgagaagacaactaaagaaagcaa 179 ||||||||| ||| |||||||||||||||| Sbjct: 197470 tgtacctgacaaggcaactaaagaaagcaa 197441
>ref|XM_472831.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3720 Score = 44.1 bits (22), Expect = 0.31 Identities = 39/45 (86%) Strand = Plus / Minus Query: 308 tcaccgtaaatcctgcgaatagtanacatgcgggtttatgtaacc 352 ||||||||||| |||||||||||| || |||||||||||||| Sbjct: 3720 tcaccgtaaattctgcgaatagtagaccgatgggtttatgtaacc 3676
>emb|AL645669.11| Mouse DNA sequence from clone RP23-26A10 on chromosome 1 Contains part of the gene for ortholog of human amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 19 (ALS2CR19), complete sequence Length = 228932 Score = 44.1 bits (22), Expect = 0.31 Identities = 28/30 (93%) Strand = Plus / Minus Query: 150 tgtacctgagaagacaactaaagaaagcaa 179 ||||||||| ||| |||||||||||||||| Sbjct: 197469 tgtacctgacaaggcaactaaagaaagcaa 197440
>gb|AC154590.2| Mus musculus BAC clone RP23-368L2 from chromosome 14, complete sequence Length = 168428 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 28 atattattggcttatttgataa 49 |||||||||||||||||||||| Sbjct: 115837 atattattggcttatttgataa 115858
>dbj|AK099564.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034M05, full insert sequence Length = 3444 Score = 44.1 bits (22), Expect = 0.31 Identities = 34/38 (89%) Strand = Plus / Minus Query: 106 aactttgcagaatgtaattaaaacactttgaaggcaaa 143 |||||||||| |||||||| || |||||||||||||| Sbjct: 3442 aactttgcaggatgtaattgaagtactttgaaggcaaa 3405 Score = 44.1 bits (22), Expect = 0.31 Identities = 39/45 (86%) Strand = Plus / Minus Query: 308 tcaccgtaaatcctgcgaatagtanacatgcgggtttatgtaacc 352 ||||||||||| |||||||||||| || |||||||||||||| Sbjct: 3218 tcaccgtaaattctgcgaatagtagaccgatgggtttatgtaacc 3174
>emb|CT033773.8| Mouse DNA sequence from clone RP23-176M23 on chromosome 14, complete sequence Length = 133931 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 28 atattattggcttatttgataa 49 |||||||||||||||||||||| Sbjct: 126471 atattattggcttatttgataa 126450
>gb|AC163898.5| Mus musculus chromosome 7, clone RP24-108A5, complete sequence Length = 143726 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 115 gaatgtaattaaaacactttg 135 ||||||||||||||||||||| Sbjct: 110534 gaatgtaattaaaacactttg 110514
>gb|AC006635.2| Caenorhabditis elegans cosmid F38G1, complete sequence Length = 24444 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 105 caactttgcagaatgtaattaaaac 129 ||||||||||||||| ||||||||| Sbjct: 13211 caactttgcagaatgaaattaaaac 13235
>emb|Z83848.1|HS57A13 Human DNA sequence from clone RP1-57A13 on chromosome Xq24 Contains the 5' end of the GRIA3 gene for glutamate receptor, ionotrophic, AMPA 3, the gene for a novel protein and a CpG island, complete sequence Length = 169693 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 84 ataccattctataatgtgctg 104 ||||||||||||||||||||| Sbjct: 43831 ataccattctataatgtgctg 43811
>ref|NM_075705.3| Caenorhabditis elegans F38G1.1 (G-beta-repeats) mRNA, complete cds Length = 2414 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 105 caactttgcagaatgtaattaaaac 129 ||||||||||||||| ||||||||| Sbjct: 62 caactttgcagaatgaaattaaaac 86
>gb|AC124696.5| Mus musculus BAC clone RP24-173I13 from chromosome 16, complete sequence Length = 187655 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 11 acttgccagtaattgtaatat 31 ||||||||||||||||||||| Sbjct: 126037 acttgccagtaattgtaatat 126017
>gb|AC133081.4| Mus musculus BAC clone RP24-290O13 from chromosome 3, complete sequence Length = 180525 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 atctcattttcaagttctct 284 |||||||||||||||||||| Sbjct: 100629 atctcattttcaagttctct 100610
>ref|XM_643029.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (557.t00002) partial mRNA Length = 1527 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 tgttgagagtcagacatctt 220 |||||||||||||||||||| Sbjct: 125 tgttgagagtcagacatctt 106
>ref|XM_646196.1| Entamoeba histolytica HM-1:IMSS conserved hypothetical protein (172.t00002) partial mRNA Length = 2397 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 tgttgagagtcagacatctt 220 |||||||||||||||||||| Sbjct: 125 tgttgagagtcagacatctt 106
>ref|XM_649852.1| Entamoeba histolytica HM-1:IMSS conserved hypothetical protein (40.t00005) partial mRNA Length = 2784 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 tgttgagagtcagacatctt 220 |||||||||||||||||||| Sbjct: 125 tgttgagagtcagacatctt 106
>ref|XM_650868.1| Entamoeba histolytica HM-1:IMSS conserved hypothetical protein (20.t00003) partial mRNA Length = 1779 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 tgttgagagtcagacatctt 220 |||||||||||||||||||| Sbjct: 125 tgttgagagtcagacatctt 106
>gb|AC090099.14| Homo sapiens chromosome 11, clone RP11-113D6, complete sequence Length = 172939 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 tgagaagacaactaaagaaa 175 |||||||||||||||||||| Sbjct: 12740 tgagaagacaactaaagaaa 12759
>gb|AC113415.3| Homo sapiens chromosome 5 clone RP11-55N10, complete sequence Length = 170798 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 tttgcagaatgtaattaaaa 128 |||||||||||||||||||| Sbjct: 40956 tttgcagaatgtaattaaaa 40937
>gb|AC107948.7| Homo sapiens chromosome 11, clone RP11-81D23, complete sequence Length = 156839 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 tgagaagacaactaaagaaa 175 |||||||||||||||||||| Sbjct: 90888 tgagaagacaactaaagaaa 90907
>gb|AC026741.6| Homo sapiens chromosome 5 clone CTD-2653M23, complete sequence Length = 195849 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 attggaaaaataccattcta 94 |||||||||||||||||||| Sbjct: 58900 attggaaaaataccattcta 58919
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 gataaatagtgaaatgtatg 64 |||||||||||||||||||| Sbjct: 9514555 gataaatagtgaaatgtatg 9514536
>gb|AC020699.6| Homo sapiens BAC clone RP11-131K17 from 4, complete sequence Length = 186961 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 aaatctcattttcaagttct 282 |||||||||||||||||||| Sbjct: 15093 aaatctcattttcaagttct 15074
>gb|AC130462.3| Homo sapiens chromosome 16 clone CTA-67A1, complete sequence Length = 191594 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 ctgcaactttgcagaatgta 121 |||||||||||||||||||| Sbjct: 181616 ctgcaactttgcagaatgta 181635
>gb|AC005235.2| Homo sapiens BAC clone RP11-439M9 from 2, complete sequence Length = 197911 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 tctcattttcaagttctctt 285 |||||||||||||||||||| Sbjct: 47540 tctcattttcaagttctctt 47521
>gb|AC020978.10| Homo sapiens chromosome 16 clone RP11-96D1, complete sequence Length = 164293 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 ctgcaactttgcagaatgta 121 |||||||||||||||||||| Sbjct: 150919 ctgcaactttgcagaatgta 150900
>dbj|AP000837.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0424A08 Length = 151294 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 gataaatagtgaaatgtatg 64 |||||||||||||||||||| Sbjct: 47984 gataaatagtgaaatgtatg 47965
>gb|AC020655.10| Homo sapiens 3 BAC RP11-15B4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 145820 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 atcactattggaaaaatacc 88 |||||||||||||||||||| Sbjct: 26810 atcactattggaaaaatacc 26791
>emb|Z33352.1|MCAAO M.capricolum DNA for CONTIG MCAAO Length = 1629 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 aagacaactaaagaaagcaa 179 |||||||||||||||||||| Sbjct: 1408 aagacaactaaagaaagcaa 1427
>emb|AJ870302.1| Cucumis sativus mRNA for putative zinc finger protein (se1a12 gene) Length = 1274 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 tgcaactttgcagaatgtaa 122 |||||||||||||||||||| Sbjct: 202 tgcaactttgcagaatgtaa 221
>gb|AC153739.3| Aotus nancymaae clone CH258-485H7, complete sequence Length = 47312 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 acaaatctcattttcaagtt 280 |||||||||||||||||||| Sbjct: 36430 acaaatctcattttcaagtt 36411
>gb|AE016854.1| Pseudomonas syringae pv. tomato str. DC3000 plasmid pDC3000B, complete sequence Length = 67473 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 ctattggaaaaataccattc 92 |||||||||||||||||||| Sbjct: 36245 ctattggaaaaataccattc 36226 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,922,426 Number of Sequences: 3902068 Number of extensions: 3922426 Number of successful extensions: 78967 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78849 Number of HSP's gapped (non-prelim): 108 length of query: 369 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 347 effective length of database: 17,147,199,772 effective search space: 5950078320884 effective search space used: 5950078320884 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)