Clone Name | rbastl31b06 |
---|---|
Clone Library Name | barley_pub |
>CFTR_XENLA (P26363) Cystic fibrosis transmembrane conductance regulator (CFTR)| (cAMP-dependent chloride channel) (ATP-binding cassette transporter sub-family C member 7) Length = 1485 Score = 30.8 bits (68), Expect = 1.9 Identities = 22/68 (32%), Positives = 33/68 (48%) Frame = -2 Query: 207 FIIQNLRTIAFITVPTCIAALYLILASCPAILVQNQKNTEEVLQPCMWCTLELIVLNACG 28 FI+ I F+ V A L++I + PAI + + +N EV TL +IV + Sbjct: 863 FILVFCLVIFFVEVAASSAWLWIIKRNAPAINMTSNENVSEVSD-----TLSVIVTHTSF 917 Query: 27 LYLRLIYV 4 Y+ IYV Sbjct: 918 YYVFYIYV 925
>MATK_PHAAD (Q9MUZ5) Maturase K (Intron maturase)| Length = 511 Score = 29.3 bits (64), Expect = 5.5 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = -1 Query: 280 KWAVKWQIMSSWLSFGFKWLKIC*IHYSKFAHHCFYNSAYL 158 KW KW +++ W F W++ IH ++ A+ CF YL Sbjct: 300 KW--KWYLINLWQYFFSFWIQPRRIHLNQLANSCFDFLGYL 338
>DPOL_ADEG1 (Q64751) DNA polymerase (EC 2.7.7.7)| Length = 1121 Score = 28.5 bits (62), Expect = 9.4 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = +1 Query: 349 ICPVAFLHNHVWHLGLCRV*ADQLVHVFPHWQQLCA 456 + + LHN W + +V D++ VFP W+ LCA Sbjct: 602 VIDILTLHNRGWRV---QVLHDEMNIVFPEWKTLCA 634
>CAPP1_SACHY (P29193) Phosphoenolpyruvate carboxylase, housekeeping isozyme (EC| 4.1.1.31) (PEPCase) (PEPC) Length = 966 Score = 28.5 bits (62), Expect = 9.4 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = -2 Query: 477 VRAGIHRGTQLLPMGEDMNELVRLHTTKSQVPDM 376 V G H ++ MG+ +ELV+L+TT P + Sbjct: 914 VNPGPHLSKDIMDMGKPASELVKLNTTSEYAPGL 947
>WNK1_HUMAN (Q9H4A3) Serine/threonine-protein kinase WNK1 (EC 2.7.11.1)| (Protein kinase with no lysine 1) (Protein kinase, lysine-deficient 1) (Kinase deficient protein) Length = 2382 Score = 28.5 bits (62), Expect = 9.4 Identities = 15/26 (57%), Positives = 16/26 (61%) Frame = +3 Query: 264 HFTAHFKPIGQPQDKLPTYLLELYSV 341 H AHF P+GQP LPT LL Y V Sbjct: 819 HSGAHFLPVGQP---LPTPLLPQYPV 841
>CR2_MOUSE (P19070) Complement receptor type 2 precursor (Cr2) (Complement C3d| receptor) (CD21 antigen) Length = 1025 Score = 28.5 bits (62), Expect = 9.4 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = -1 Query: 139 YFGKLSCDPSPESEKYRGSFATVYVVHT*IDRVEC 35 YF ++SCDP PE + R + ++ +V + R C Sbjct: 8 YFSEISCDPPPEVKNARKPYYSLPIVPGTVLRYTC 42 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,410,664 Number of Sequences: 219361 Number of extensions: 1340367 Number of successful extensions: 3409 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 3333 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3409 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)