ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl31b06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CFTR_XENLA (P26363) Cystic fibrosis transmembrane conductance re... 31 1.9
2MATK_PHAAD (Q9MUZ5) Maturase K (Intron maturase) 29 5.5
3DPOL_ADEG1 (Q64751) DNA polymerase (EC 2.7.7.7) 28 9.4
4CAPP1_SACHY (P29193) Phosphoenolpyruvate carboxylase, housekeepi... 28 9.4
5WNK1_HUMAN (Q9H4A3) Serine/threonine-protein kinase WNK1 (EC 2.7... 28 9.4
6CR2_MOUSE (P19070) Complement receptor type 2 precursor (Cr2) (C... 28 9.4

>CFTR_XENLA (P26363) Cystic fibrosis transmembrane conductance regulator (CFTR)|
            (cAMP-dependent chloride channel) (ATP-binding cassette
            transporter sub-family C member 7)
          Length = 1485

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 22/68 (32%), Positives = 33/68 (48%)
 Frame = -2

Query: 207  FIIQNLRTIAFITVPTCIAALYLILASCPAILVQNQKNTEEVLQPCMWCTLELIVLNACG 28
            FI+     I F+ V    A L++I  + PAI + + +N  EV       TL +IV +   
Sbjct: 863  FILVFCLVIFFVEVAASSAWLWIIKRNAPAINMTSNENVSEVSD-----TLSVIVTHTSF 917

Query: 27   LYLRLIYV 4
             Y+  IYV
Sbjct: 918  YYVFYIYV 925



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>MATK_PHAAD (Q9MUZ5) Maturase K (Intron maturase)|
          Length = 511

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 280 KWAVKWQIMSSWLSFGFKWLKIC*IHYSKFAHHCFYNSAYL 158
           KW  KW +++ W  F   W++   IH ++ A+ CF    YL
Sbjct: 300 KW--KWYLINLWQYFFSFWIQPRRIHLNQLANSCFDFLGYL 338



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>DPOL_ADEG1 (Q64751) DNA polymerase (EC 2.7.7.7)|
          Length = 1121

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 349 ICPVAFLHNHVWHLGLCRV*ADQLVHVFPHWQQLCA 456
           +  +  LHN  W +   +V  D++  VFP W+ LCA
Sbjct: 602 VIDILTLHNRGWRV---QVLHDEMNIVFPEWKTLCA 634



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>CAPP1_SACHY (P29193) Phosphoenolpyruvate carboxylase, housekeeping isozyme (EC|
            4.1.1.31) (PEPCase) (PEPC)
          Length = 966

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 477  VRAGIHRGTQLLPMGEDMNELVRLHTTKSQVPDM 376
            V  G H    ++ MG+  +ELV+L+TT    P +
Sbjct: 914  VNPGPHLSKDIMDMGKPASELVKLNTTSEYAPGL 947



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>WNK1_HUMAN (Q9H4A3) Serine/threonine-protein kinase WNK1 (EC 2.7.11.1)|
           (Protein kinase with no lysine 1) (Protein kinase,
           lysine-deficient 1) (Kinase deficient protein)
          Length = 2382

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 15/26 (57%), Positives = 16/26 (61%)
 Frame = +3

Query: 264 HFTAHFKPIGQPQDKLPTYLLELYSV 341
           H  AHF P+GQP   LPT LL  Y V
Sbjct: 819 HSGAHFLPVGQP---LPTPLLPQYPV 841



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>CR2_MOUSE (P19070) Complement receptor type 2 precursor (Cr2) (Complement C3d|
           receptor) (CD21 antigen)
          Length = 1025

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 139 YFGKLSCDPSPESEKYRGSFATVYVVHT*IDRVEC 35
           YF ++SCDP PE +  R  + ++ +V   + R  C
Sbjct: 8   YFSEISCDPPPEVKNARKPYYSLPIVPGTVLRYTC 42


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,410,664
Number of Sequences: 219361
Number of extensions: 1340367
Number of successful extensions: 3409
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3409
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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