ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl31b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PPNK1_PROMP (Q7V3C2) Probable inorganic polyphosphate/ATP-NAD ki... 31 1.9
2DC12_XENTR (Q6P7N4) UPF0361 protein DC12 homolog 30 4.3
3DC12_XENLA (Q6IND6) UPF0361 protein DC12 homolog 29 5.6
4MTSS1_MOUSE (Q8R1S4) Metastasis suppressor protein 1 (Missing in... 29 5.6
5PAPC_ECOLI (P07110) Outer membrane usher protein papC precursor 29 7.3
6MRCKG_MOUSE (Q80UW5) Serine/threonine-protein kinase MRCK gamma ... 29 7.3
7SIF2_YEAST (P38262) SIR4-interacting protein SIF2 29 7.3

>PPNK1_PROMP (Q7V3C2) Probable inorganic polyphosphate/ATP-NAD kinase 1 (EC|
           2.7.1.23) (Poly(P)/ATP NAD kinase 1)
          Length = 299

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 7/42 (16%)
 Frame = -3

Query: 138 RAVPLWKDGT-C-----RDY-QSSQQSLPCKMFPLNYSLSHY 34
           R + LWKDG+ C      DY + ++ + PCKM   N S+S+Y
Sbjct: 237 REIKLWKDGSKCMTIKENDYCEINKVTKPCKMIKFNKSISYY 278



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>DC12_XENTR (Q6P7N4) UPF0361 protein DC12 homolog|
          Length = 335

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -3

Query: 138 RAVPLWKDGTCRDYQSSQQSLPCKMFPLNYSLSHYQ 31
           R  P W+DG    YQ S    P    P+  SL H+Q
Sbjct: 27  RKWPNWRDGDSDKYQPSYNKSPQSNSPVLLSLKHFQ 62



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>DC12_XENLA (Q6IND6) UPF0361 protein DC12 homolog|
          Length = 336

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 129 PLWKDGTCRDYQSSQQSLPCKMFPLNYSLSHYQ 31
           P W+DG    YQ S    P    P+  SL H+Q
Sbjct: 30  PKWRDGDTDKYQPSYNKSPQSNNPVLLSLKHFQ 62



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>MTSS1_MOUSE (Q8R1S4) Metastasis suppressor protein 1 (Missing in metastasis|
           protein)
          Length = 759

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +1

Query: 223 ITQSLSIITISPPNHNLKVMIGPY*HFEIFERY-HQISSFSSPESPQFYTLNPFGRTSSG 399
           ++   S  ++S  +H   V  GP+ H     R   +++S   P+   +YT+ P    SS 
Sbjct: 350 LSNGFSHCSLSSESHAGPVGAGPFPHCLPASRLLPRVTSVHLPDYAHYYTIGPGMFPSSQ 409

Query: 400 VSSWRSAWAVLG 435
           + SW+  WA  G
Sbjct: 410 IPSWKD-WAKPG 420



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>PAPC_ECOLI (P07110) Outer membrane usher protein papC precursor|
          Length = 836

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
 Frame = -1

Query: 476 GESDSVNWT----CSTGAPKTAQAERQLLTP 396
           GE+ SVNW     C    P+TA +++QLL P
Sbjct: 801 GETLSVNWDGKIQCQVNVPETAISDQQLLLP 831



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>MRCKG_MOUSE (Q80UW5) Serine/threonine-protein kinase MRCK gamma (EC 2.7.11.1)|
           (CDC42-binding protein kinase gamma) (Myotonic dystrophy
           kinase-related CDC42-binding kinase gamma) (Myotonic
           dystrophy protein kinase-like alpha) (MRCK gamma)
           (DMPK-like gamma
          Length = 1551

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +3

Query: 396 RCQQLALGLGRFGRACRTC 452
           RC  L LGLGR G  C TC
Sbjct: 893 RCTSLMLGLGRQGLGCDTC 911



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>SIF2_YEAST (P38262) SIR4-interacting protein SIF2|
          Length = 535

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 234 GLGDGYSCFLGTTLSVLG-SWIGS*VGSDCSFARAVPLW 121
           G G+  +CF G + S++  SW+G      CS   +V LW
Sbjct: 389 GNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLW 427


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,683,485
Number of Sequences: 219361
Number of extensions: 1511435
Number of successful extensions: 3899
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3899
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3246866728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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