Clone Name | rbastl31b05 |
---|---|
Clone Library Name | barley_pub |
>PPNK1_PROMP (Q7V3C2) Probable inorganic polyphosphate/ATP-NAD kinase 1 (EC| 2.7.1.23) (Poly(P)/ATP NAD kinase 1) Length = 299 Score = 30.8 bits (68), Expect = 1.9 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 7/42 (16%) Frame = -3 Query: 138 RAVPLWKDGT-C-----RDY-QSSQQSLPCKMFPLNYSLSHY 34 R + LWKDG+ C DY + ++ + PCKM N S+S+Y Sbjct: 237 REIKLWKDGSKCMTIKENDYCEINKVTKPCKMIKFNKSISYY 278
>DC12_XENTR (Q6P7N4) UPF0361 protein DC12 homolog| Length = 335 Score = 29.6 bits (65), Expect = 4.3 Identities = 14/36 (38%), Positives = 17/36 (47%) Frame = -3 Query: 138 RAVPLWKDGTCRDYQSSQQSLPCKMFPLNYSLSHYQ 31 R P W+DG YQ S P P+ SL H+Q Sbjct: 27 RKWPNWRDGDSDKYQPSYNKSPQSNSPVLLSLKHFQ 62
>DC12_XENLA (Q6IND6) UPF0361 protein DC12 homolog| Length = 336 Score = 29.3 bits (64), Expect = 5.6 Identities = 13/33 (39%), Positives = 16/33 (48%) Frame = -3 Query: 129 PLWKDGTCRDYQSSQQSLPCKMFPLNYSLSHYQ 31 P W+DG YQ S P P+ SL H+Q Sbjct: 30 PKWRDGDTDKYQPSYNKSPQSNNPVLLSLKHFQ 62
>MTSS1_MOUSE (Q8R1S4) Metastasis suppressor protein 1 (Missing in metastasis| protein) Length = 759 Score = 29.3 bits (64), Expect = 5.6 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%) Frame = +1 Query: 223 ITQSLSIITISPPNHNLKVMIGPY*HFEIFERY-HQISSFSSPESPQFYTLNPFGRTSSG 399 ++ S ++S +H V GP+ H R +++S P+ +YT+ P SS Sbjct: 350 LSNGFSHCSLSSESHAGPVGAGPFPHCLPASRLLPRVTSVHLPDYAHYYTIGPGMFPSSQ 409 Query: 400 VSSWRSAWAVLG 435 + SW+ WA G Sbjct: 410 IPSWKD-WAKPG 420
>PAPC_ECOLI (P07110) Outer membrane usher protein papC precursor| Length = 836 Score = 28.9 bits (63), Expect = 7.3 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 4/31 (12%) Frame = -1 Query: 476 GESDSVNWT----CSTGAPKTAQAERQLLTP 396 GE+ SVNW C P+TA +++QLL P Sbjct: 801 GETLSVNWDGKIQCQVNVPETAISDQQLLLP 831
>MRCKG_MOUSE (Q80UW5) Serine/threonine-protein kinase MRCK gamma (EC 2.7.11.1)| (CDC42-binding protein kinase gamma) (Myotonic dystrophy kinase-related CDC42-binding kinase gamma) (Myotonic dystrophy protein kinase-like alpha) (MRCK gamma) (DMPK-like gamma Length = 1551 Score = 28.9 bits (63), Expect = 7.3 Identities = 12/19 (63%), Positives = 12/19 (63%) Frame = +3 Query: 396 RCQQLALGLGRFGRACRTC 452 RC L LGLGR G C TC Sbjct: 893 RCTSLMLGLGRQGLGCDTC 911
>SIF2_YEAST (P38262) SIR4-interacting protein SIF2| Length = 535 Score = 28.9 bits (63), Expect = 7.3 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Frame = -3 Query: 234 GLGDGYSCFLGTTLSVLG-SWIGS*VGSDCSFARAVPLW 121 G G+ +CF G + S++ SW+G CS +V LW Sbjct: 389 GNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLW 427 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,683,485 Number of Sequences: 219361 Number of extensions: 1511435 Number of successful extensions: 3899 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 3803 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3899 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3246866728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)