>TRPB_PSESY (P34817) Tryptophan synthase beta chain (EC 4.2.1.20)|
          Length = 408

 Score = 33.5 bits (75), Expect = 0.24
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
 Frame = -1

Query: 440 KSARRHGEVPAVGGAHDLRHGQGRAALRPEDH-----VAAQGDRSKHVVRHTFKTNRYVL 276
           K  R  G +PA+  AH L     RA   P+DH     ++ +GD+    V H  +T +   
Sbjct: 348 KCCRLEGIIPALESAHALAEVFKRAPTLPKDHLMVVNLSGRGDKDMQTVMHHMETTKQEK 407

Query: 275 H 273
           H
Sbjct: 408 H 408

>FUSB_BURCE (P24127) Fusaric acid resistance protein fusB|
          Length = 142

 Score = 32.7 bits (73), Expect = 0.41
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = -3

Query: 423 WRSPCSGRCA*PTPRA 376
           WRSPC  RCA P PRA
Sbjct: 110 WRSPCGSRCAPPAPRA 125

>FANCA_HUMAN (O15360) Fanconi anemia group A protein (Protein FACA)|
          Length = 1455

 Score = 31.6 bits (70), Expect = 0.91
 Identities = 15/39 (38%), Positives = 16/39 (41%)
 Frame = +1

Query: 289  FVLNVCLTTCLLRSPWAATWSSGRRAALPCPWRRSCAPP 405
            F+L  C T C L    A  W       L C WRR C  P
Sbjct: 1154 FILAKCQTKCPLILTSALVWWPSLEPVLLCRWRRHCQSP 1192

>CN065_HUMAN (Q8N9R9) Protein C14orf65|
          Length = 162

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 7/39 (17%)
 Frame = +1

Query: 331 PWAA----TWSS---GRRAALPCPWRRSCAPPTAGTSPC 426
           PW +    TW S       A PC WR S +PP +  SPC
Sbjct: 99  PWRSGCPHTWGSVLSHPMPAAPCFWRSSPSPPVSAMSPC 137

>YIAO_ECOLI (P37676) 2,3-diketo-L-gulonate-binding periplasmic protein yiaO|
           precursor (2,3-DKG-binding protein) (Extracytoplasmic
           solute receptor protein yiaO)
          Length = 328

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 21/53 (39%), Positives = 24/53 (45%)
 Frame = +2

Query: 257 AEIQSSVIRNGLS*MYVSLHACFDLLGPPRGLLDAEQPFLARGVGHAHLPLQG 415
           A+   S +R G   M +S    F  L P   LLD   PFL R   HAH  L G
Sbjct: 72  AQAMISGVRGGTIDMEMSGSNNFAGLSPVMNLLDV--PFLFRDTAHAHKTLDG 122

>VG12_SHV21 (P24915) Hypothetical gene 12 protein|
          Length = 169

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = -1

Query: 236 SC*C*KRQMHCAAVESCMCFSAFHSFFCLDNICCKMNVMLYCKSIGRATARRVVPVLQE 60
           +C C  R  H        CF + H  FC      K  +M+ C S+ + ++    PVL++
Sbjct: 22  ACDCPSRVHHTCLQSHIQCFKSSHCTFCEK----KYKIMVMCNSLKKCSS----PVLEQ 72

>SYN_CLOPE (P58693) Asparaginyl-tRNA synthetase (EC 6.1.1.22)|
           (Asparagine--tRNA ligase) (AsnRS)
          Length = 465

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 8/110 (7%)
 Frame = +2

Query: 128 SFYNKCCPSKRKNERPKNTYMILQLHNAFAFFSINKNHVLIP-RAEIQSSVIRNGLS*MY 304
           S Y        K  +       L+  NAF F  +N        +    S+ I N      
Sbjct: 9   SLYRNTSEYSDKKVKISGWIRTLRASNAFGFIEVNDGSFFKNVQVVFDSAKISNYKEISK 68

Query: 305 VSLHACFDLLGPPRGLLDAEQPF-------LARGVGHAHLPLQGLRHAFE 433
           + + +   ++G      D++QPF       +  G+  +  PLQ  RH FE
Sbjct: 69  LPISSSISVIGTLVETPDSKQPFEIQAEEIIVEGMSDSDYPLQKKRHTFE 118

>ACPS_SALPA (Q5PIJ4) Holo-[acyl-carrier-protein] synthase (EC 2.7.8.7)|
           (Holo-ACP synthase) (4'-phosphopantetheinyl transferase
           acpS)
          Length = 126

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
 Frame = +2

Query: 179 NTYMILQLHNAFAFFSINKNHVLIPRAEIQSSVIRNGLS*MYVSLHACFDLLGPPRGLLD 358
           N + I + H     F   +  V    A+   + IRNGL+  +       D LG PR  L 
Sbjct: 35  NEWAIWETHQQPVRFLAKRFAVKEAAAKAFGTGIRNGLA--FNQFEVFNDELGKPRLRLW 92

Query: 359 AEQPFLAR--GVGHAHLPLQGLRH 424
            E   LA   GV H H+ L   RH
Sbjct: 93  GEALTLAEKLGVAHMHVTLADERH 116

>ACPS_SALTY (P63466) Holo-[acyl-carrier-protein] synthase (EC 2.7.8.7)|
           (Holo-ACP synthase) (4'-phosphopantetheinyl transferase
           acpS)
          Length = 125

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
 Frame = +2

Query: 179 NTYMILQLHNAFAFFSINKNHVLIPRAEIQSSVIRNGLS*MYVSLHACFDLLGPPRGLLD 358
           N + I + H     F   +  V    A+   + IRNGL+  +       D LG PR  L 
Sbjct: 34  NEWAIWETHQQPVRFLAKRFAVKEAAAKAFGTGIRNGLA--FNQFEVFNDELGKPRLRLW 91

Query: 359 AEQPFLAR--GVGHAHLPLQGLRH 424
            E   LA   GV H H+ L   RH
Sbjct: 92  GEALTLAEKLGVAHMHVTLADERH 115

>ACPS_SALTI (P63467) Holo-[acyl-carrier-protein] synthase (EC 2.7.8.7)|
           (Holo-ACP synthase) (4'-phosphopantetheinyl transferase
           acpS)
          Length = 125

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
 Frame = +2

Query: 179 NTYMILQLHNAFAFFSINKNHVLIPRAEIQSSVIRNGLS*MYVSLHACFDLLGPPRGLLD 358
           N + I + H     F   +  V    A+   + IRNGL+  +       D LG PR  L 
Sbjct: 34  NEWAIWETHQQPVRFLAKRFAVKEAAAKAFGTGIRNGLA--FNQFEVFNDELGKPRLRLW 91

Query: 359 AEQPFLAR--GVGHAHLPLQGLRH 424
            E   LA   GV H H+ L   RH
Sbjct: 92  GEALTLAEKLGVAHMHVTLADERH 115


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,164,424
Number of Sequences: 219361
Number of extensions: 1240795
Number of successful extensions: 3278
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3278
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)