ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl31b04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY596586.1| Saccharum officinarum clone SCCCRZ2002H08, comple... 98 3e-17
2ref|XM_463541.1| Oryza sativa (japonica cultivar-group), predic... 90 7e-15
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 90 7e-15
4dbj|AP003561.2| Oryza sativa (japonica cultivar-group) genomic D... 90 7e-15
5dbj|AK119636.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 7e-15
6dbj|AK100713.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 7e-15
7gb|AY104480.1| Zea mays PCO099563 mRNA sequence 84 4e-13
8emb|CT009521.5| M.truncatula DNA sequence from clone MTH2-81E13 ... 62 2e-06
9emb|BX248137.9| Zebrafish DNA sequence from clone DKEY-19L19, co... 44 0.38
10gb|AC169379.4| Sorghum bicolor clone SB_BBc0088B22, complete seq... 44 0.38
11gb|AC121264.8| Mus musculus chromosome 9, clone RP24-233F22, com... 42 1.5
12emb|CR940310.6| M.truncatula DNA sequence from clone MTH2-5D8 on... 42 1.5
13gb|AC003119.1|HUAC003119 Human Chromosome 16 BAC clone CIT987SK-... 42 1.5
14emb|X89383.1|RNSNF1KIN R.norvegicus mRNA for SNF1-related kinase 42 1.5
15gb|AF387809.2| Mus musculus strain BALB/c SNF-1 related kinase (... 42 1.5
16gb|AC162794.4| Mus musculus chromosome 3, clone RP24-120B22, com... 42 1.5
17gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 42 1.5
18dbj|AK053203.1| Mus musculus 0 day neonate lung cDNA, RIKEN full... 42 1.5
19dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
20gb|BC094658.1| Mus musculus SNF related kinase, mRNA (cDNA clone... 42 1.5
21ref|NM_138833.1| Rattus norvegicus SNF related kinase (Snrk), mRNA 42 1.5
22ref|XM_579653.1| PREDICTED: Rattus norvegicus hypothetical LOC36... 42 1.5
23ref|XM_579652.1| PREDICTED: Rattus norvegicus SNF related kinase... 42 1.5
24dbj|AK211321.1| Mus musculus cDNA, clone:Y2G0121F20, strand:minu... 42 1.5
25ref|NM_212200.1| Eremothecium gossypii AFR517Cp (AFR517C), mRNA 42 1.5
26gb|BC020189.1| Mus musculus SNF related kinase, mRNA (cDNA clone... 42 1.5
27ref|NM_133741.1| Mus musculus SNF related kinase (Snrk), mRNA 42 1.5
28gb|AC120394.10| Mus musculus chromosome 9, clone RP24-325N9, com... 42 1.5
29gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
30emb|AL731882.2|CNS08C8M Oryza sativa chromosome 12, . BAC OSJNBb... 42 1.5
31emb|AL732376.2|CNS08C8Z Oryza sativa chromosome 12, . BAC OSJNBa... 42 1.5
32gb|AC104930.9| Mus musculus chromosome 7, clone RP24-224C21, com... 40 5.9
33gb|AY347745.1| Physcomitrella patens Snf1 related kinase 1 (SNF1... 40 5.9
34ref|XM_993959.1| PREDICTED: Mus musculus golgi autoantigen, golg... 40 5.9
35ref|XM_001001861.1| PREDICTED: Mus musculus golgi autoantigen, g... 40 5.9
36ref|XM_916950.2| PREDICTED: Mus musculus golgi autoantigen, golg... 40 5.9
37ref|XM_901689.2| PREDICTED: Mus musculus golgi autoantigen, golg... 40 5.9
38ref|XM_148244.7| PREDICTED: Mus musculus golgi autoantigen, golg... 40 5.9
39ref|XM_901694.2| PREDICTED: Mus musculus golgi autoantigen, golg... 40 5.9
40emb|CR382370.13| Zebrafish DNA sequence from clone DKEY-22O12 in... 40 5.9
41emb|CR388412.9| Zebrafish DNA sequence from clone CH211-69G13 in... 40 5.9
42emb|AL590240.5| Human DNA sequence from clone RP11-266I3 on chro... 40 5.9
43emb|AL513082.10| Human DNA sequence from clone RP11-229N15 on ch... 40 5.9
44emb|BX908783.8| Zebrafish DNA sequence from clone DKEY-86M2 in l... 40 5.9
45emb|BX323796.14| Zebrafish DNA sequence from clone DKEY-106N21 i... 40 5.9
46emb|BX649627.10| Zebrafish DNA sequence from clone DKEY-78B7 in ... 40 5.9
47emb|BX511176.6| Zebrafish DNA sequence from clone CH211-8C17 in ... 40 5.9
48gb|AC154763.2| Mus musculus BAC clone RP24-422J16 from chromosom... 40 5.9
49emb|CR556722.7| Zebrafish DNA sequence from clone CH211-195N12 i... 40 5.9
50emb|BX000435.21| Zebrafish DNA sequence from clone DKEY-12L8 in ... 40 5.9
51gb|AC020906.6| Homo sapiens chromosome 19 clone CTB-83J15, compl... 40 5.9
52gb|AC150559.31| Medicago truncatula clone mth2-67j8, complete se... 40 5.9
53emb|AL935031.12| Zebrafish DNA sequence from clone CH211-93I23, ... 40 5.9
54emb|BX640577.17| Zebrafish DNA sequence from clone DKEY-117O14 i... 40 5.9
55gb|AC090573.6| Homo sapiens chromosome 8, clone RP11-440B23, com... 40 5.9
56dbj|AK155415.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 5.9
57gb|AC023034.9| Homo sapiens, clone RP11-499F3, complete sequence 40 5.9
58gb|AC155930.3| Mus musculus BAC clone RP23-412K9 from chromosome... 40 5.9
59dbj|AK020091.1| Mus musculus adult male medulla oblongata cDNA, ... 40 5.9
60gb|AC008394.3|AC008394 Homo sapiens chromosome 5 clone CTC_242N1... 40 5.9
61emb|BX000536.7| Zebrafish DNA sequence from clone CH211-10C6 in ... 40 5.9
62dbj|AB025638.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 5.9
63gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 40 5.9
64emb|BX842613.7| Zebrafish DNA sequence from clone CH211-227J9 in... 40 5.9
65emb|BX004885.4| Zebrafish DNA sequence from clone CH211-103L6, c... 40 5.9
66gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 5.9
67emb|CR762424.33| Zebrafish DNA sequence from clone RP71-52E8 in ... 40 5.9

>gb|AY596586.1| Saccharum officinarum clone SCCCRZ2002H08, complete sequence
          Length = 2841

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 85/97 (87%)
 Strand = Plus / Minus

                                                                        
Query: 330  tccttgggccgccacgtggtcttctggacgcagagcagcccttccttgcccgtggcgtag 389
            ||||||||||||||| | | ||||| |||||||||||  || || |||||| ||| ||||
Sbjct: 2581 tccttgggccgccacatcgacttctcgacgcagagcaagccctcgttgcccttggtgtag 2522

                                                 
Query: 390  gtcatgcgcacctcccactgcagggacttcgccatgc 426
            ||||| ||||||||||||||||||||||| |||||||
Sbjct: 2521 gtcattcgcacctcccactgcagggacttggccatgc 2485



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>ref|XM_463541.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2421

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 99/117 (84%)
 Strand = Plus / Minus

                                                                        
Query: 313  acatgcttgcttcgatctccttgggccgccacgtggtcttctggacgcagagcagccctt 372
            |||||||||| ||||||||||||||||||||| ||| ||| ||||| || || || || |
Sbjct: 2419 acatgcttgcctcgatctccttgggccgccacatggacttttggacacatagaagaccct 2360

                                                                     
Query: 373  ccttgcccgtggcgtaggtcatgcgcacctcccactgcagggacttcgccatgcctt 429
            | || ||| ||| |||||||||||| ||||||||||| || |||||  |||||||||
Sbjct: 2359 cgttacccttggtgtaggtcatgcgaacctcccactgaagcgactttaccatgcctt 2303



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 99/117 (84%)
 Strand = Plus / Plus

                                                                            
Query: 313      acatgcttgcttcgatctccttgggccgccacgtggtcttctggacgcagagcagccctt 372
                |||||||||| ||||||||||||||||||||| ||| ||| ||||| || || || || |
Sbjct: 38379953 acatgcttgcctcgatctccttgggccgccacatggacttttggacacatagaagaccct 38380012

                                                                         
Query: 373      ccttgcccgtggcgtaggtcatgcgcacctcccactgcagggacttcgccatgcctt 429
                | || ||| ||| |||||||||||| ||||||||||| || |||||  |||||||||
Sbjct: 38380013 cgttacccttggtgtaggtcatgcgaacctcccactgaagcgactttaccatgcctt 38380069



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>dbj|AP003561.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1065E10
          Length = 183580

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 99/117 (84%)
 Strand = Plus / Plus

                                                                          
Query: 313    acatgcttgcttcgatctccttgggccgccacgtggtcttctggacgcagagcagccctt 372
              |||||||||| ||||||||||||||||||||| ||| ||| ||||| || || || || |
Sbjct: 140778 acatgcttgcctcgatctccttgggccgccacatggacttttggacacatagaagaccct 140837

                                                                       
Query: 373    ccttgcccgtggcgtaggtcatgcgcacctcccactgcagggacttcgccatgcctt 429
              | || ||| ||| |||||||||||| ||||||||||| || |||||  |||||||||
Sbjct: 140838 cgttacccttggtgtaggtcatgcgaacctcccactgaagcgactttaccatgcctt 140894



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>dbj|AK119636.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-F03, full
            insert sequence
          Length = 2826

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 99/117 (84%)
 Strand = Plus / Minus

                                                                        
Query: 313  acatgcttgcttcgatctccttgggccgccacgtggtcttctggacgcagagcagccctt 372
            |||||||||| ||||||||||||||||||||| ||| ||| ||||| || || || || |
Sbjct: 2557 acatgcttgcctcgatctccttgggccgccacatggacttttggacacatagaagaccct 2498

                                                                     
Query: 373  ccttgcccgtggcgtaggtcatgcgcacctcccactgcagggacttcgccatgcctt 429
            | || ||| ||| |||||||||||| ||||||||||| || |||||  |||||||||
Sbjct: 2497 cgttacccttggtgtaggtcatgcgaacctcccactgaagcgactttaccatgcctt 2441



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>dbj|AK100713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023115H24, full
            insert sequence
          Length = 2988

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 99/117 (84%)
 Strand = Plus / Minus

                                                                        
Query: 313  acatgcttgcttcgatctccttgggccgccacgtggtcttctggacgcagagcagccctt 372
            |||||||||| ||||||||||||||||||||| ||| ||| ||||| || || || || |
Sbjct: 2723 acatgcttgcctcgatctccttgggccgccacatggacttttggacacatagaagaccct 2664

                                                                     
Query: 373  ccttgcccgtggcgtaggtcatgcgcacctcccactgcagggacttcgccatgcctt 429
            | || ||| ||| |||||||||||| ||||||||||| || |||||  |||||||||
Sbjct: 2663 cgttacccttggtgtaggtcatgcgaacctcccactgaagcgactttaccatgcctt 2607



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>gb|AY104480.1| Zea mays PCO099563 mRNA sequence
          Length = 2194

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 81/94 (86%)
 Strand = Plus / Minus

                                                                        
Query: 333  ttgggccgccacgtggtcttctggacgcagagcagcccttccttgcccgtggcgtaggtc 392
            |||||||||||| | | ||||| |||||||||||| || ||  ||||| ||| |||||||
Sbjct: 1883 ttgggccgccacatcgacttctcgacgcagagcaggccctcgctgcccttggtgtaggtc 1824

                                              
Query: 393  atgcgcacctcccactgcagggacttcgccatgc 426
            || |||||||||||||||| |||||| |||||||
Sbjct: 1823 atccgcacctcccactgcacggacttggccatgc 1790



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>emb|CT009521.5| M.truncatula DNA sequence from clone MTH2-81E13 on chromosome 3,
             complete sequence
          Length = 56728

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 76/91 (83%)
 Strand = Plus / Minus

                                                                         
Query: 328   tctccttgggccgccacgtggtcttctggacgcagagcagcccttccttgcccgtggcgt 387
             ||||||| |||||||| |||| ||||||||| || | ||  || |||||  || ||| ||
Sbjct: 16453 tctccttaggccgccaggtggacttctggacacataacaaaccctccttatccttggagt 16394

                                            
Query: 388   aggtcatgcgcacctcccactgcagggactt 418
             |||||||||| ||||||||||||| ||||||
Sbjct: 16393 aggtcatgcgaacctcccactgcatggactt 16363



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>emb|BX248137.9| Zebrafish DNA sequence from clone DKEY-19L19, complete sequence
          Length = 209896

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 120    cattacattcattttacaacaaatgt 145
              |||| |||||||||||||||||||||
Sbjct: 176545 catttcattcattttacaacaaatgt 176520



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>gb|AC169379.4| Sorghum bicolor clone SB_BBc0088B22, complete sequence
          Length = 105215

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 324   tcgatctccttgggccgccacgtggtcttc 353
             ||||||||| ||||||||||||| ||||||
Sbjct: 95322 tcgatctccgtgggccgccacgtcgtcttc 95293



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>gb|AC121264.8| Mus musculus chromosome 9, clone RP24-233F22, complete sequence
          Length = 194261

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 358   cgcagagcagcccttccttgc 378
             |||||||||||||||||||||
Sbjct: 40255 cgcagagcagcccttccttgc 40235



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>emb|CR940310.6| M.truncatula DNA sequence from clone MTH2-5D8 on chromosome 3, complete
             sequence
          Length = 121689

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 175   gaaaaacacatacatgattctacag 199
             ||||||||||| |||||||||||||
Sbjct: 37638 gaaaaacacattcatgattctacag 37614



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>gb|AC003119.1|HUAC003119 Human Chromosome 16 BAC clone CIT987SK-27D10, complete sequence
          Length = 88036

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 148   tccaagcaaaagaaagaatga 168
             |||||||||||||||||||||
Sbjct: 23224 tccaagcaaaagaaagaatga 23204



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>emb|X89383.1|RNSNF1KIN R.norvegicus mRNA for SNF1-related kinase
          Length = 3004

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 358  cgcagagcagcccttccttgc 378
            |||||||||||||||||||||
Sbjct: 2355 cgcagagcagcccttccttgc 2335



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>gb|AF387809.2| Mus musculus strain BALB/c SNF-1 related kinase (Snrk) mRNA, complete
            cds
          Length = 4708

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 358  cgcagagcagcccttccttgc 378
            |||||||||||||||||||||
Sbjct: 2360 cgcagagcagcccttccttgc 2340



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>gb|AC162794.4| Mus musculus chromosome 3, clone RP24-120B22, complete sequence
          Length = 139773

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 151   aagcaaaagaaagaatgaaag 171
             |||||||||||||||||||||
Sbjct: 81804 aagcaaaagaaagaatgaaag 81784



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>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI,
               complete sequence
          Length = 1813164

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 151     aagcaaaagaaagaatgaaaggccgaaaa 179
               ||||||||||||||| |||||||| ||||
Sbjct: 1363005 aagcaaaagaaagaaagaaaggccaaaaa 1362977



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>dbj|AK053203.1| Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched
            library, clone:E030034B15 product:SNF-1 RELATED KINASE
            homolog [Mus musculus], full insert sequence
          Length = 1992

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 358  cgcagagcagcccttccttgc 378
            |||||||||||||||||||||
Sbjct: 1315 cgcagagcagcccttccttgc 1295



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                    
Query: 330     tccttgggccgccacgtggtcttctggacgcagagca 366
               ||||||||||||||| | ||||||| | |||||||||
Sbjct: 3970088 tccttgggccgccacatcgtcttctcggcgcagagca 3970052



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>gb|BC094658.1| Mus musculus SNF related kinase, mRNA (cDNA clone MGC:101984
            IMAGE:5721174), complete cds
          Length = 4740

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 358  cgcagagcagcccttccttgc 378
            |||||||||||||||||||||
Sbjct: 2388 cgcagagcagcccttccttgc 2368



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>ref|NM_138833.1| Rattus norvegicus SNF related kinase (Snrk), mRNA
          Length = 3004

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 358  cgcagagcagcccttccttgc 378
            |||||||||||||||||||||
Sbjct: 2355 cgcagagcagcccttccttgc 2335



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>ref|XM_579653.1| PREDICTED: Rattus norvegicus hypothetical LOC367880 (LOC367880), mRNA
          Length = 2806

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 358  cgcagagcagcccttccttgc 378
            |||||||||||||||||||||
Sbjct: 2160 cgcagagcagcccttccttgc 2140



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>ref|XM_579652.1| PREDICTED: Rattus norvegicus SNF related kinase (Snrk), mRNA
          Length = 2270

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 358  cgcagagcagcccttccttgc 378
            |||||||||||||||||||||
Sbjct: 1621 cgcagagcagcccttccttgc 1601



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>dbj|AK211321.1| Mus musculus cDNA, clone:Y2G0121F20, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000063498, based on BLAT search
          Length = 400

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 358 cgcagagcagcccttccttgc 378
           |||||||||||||||||||||
Sbjct: 99  cgcagagcagcccttccttgc 79



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>ref|NM_212200.1| Eremothecium gossypii AFR517Cp (AFR517C), mRNA
          Length = 2616

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 151  aagcaaaagaaagaatgaaaggccgaaaa 179
            ||||||||||||||| |||||||| ||||
Sbjct: 1333 aagcaaaagaaagaaagaaaggccaaaaa 1361



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>gb|BC020189.1| Mus musculus SNF related kinase, mRNA (cDNA clone MGC:28970
            IMAGE:4482701), complete cds
          Length = 3101

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 358  cgcagagcagcccttccttgc 378
            |||||||||||||||||||||
Sbjct: 2402 cgcagagcagcccttccttgc 2382



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>ref|NM_133741.1| Mus musculus SNF related kinase (Snrk), mRNA
          Length = 4708

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 358  cgcagagcagcccttccttgc 378
            |||||||||||||||||||||
Sbjct: 2360 cgcagagcagcccttccttgc 2340



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>gb|AC120394.10| Mus musculus chromosome 9, clone RP24-325N9, complete sequence
          Length = 206641

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 358    cgcagagcagcccttccttgc 378
              |||||||||||||||||||||
Sbjct: 184055 cgcagagcagcccttccttgc 184035



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                    
Query: 330     tccttgggccgccacgtggtcttctggacgcagagca 366
               ||||||||||||||| | ||||||| | |||||||||
Sbjct: 3970062 tccttgggccgccacatcgtcttctcggcgcagagca 3970026



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>emb|AL731882.2|CNS08C8M Oryza sativa chromosome 12, . BAC OSJNBb0028H07 of library OSJNBb
            from chromosome 12 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 132682

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 330  tccttgggccgccacgtggtcttctggacgcagagca 366
            ||||||||||||||| | ||||||| | |||||||||
Sbjct: 6498 tccttgggccgccacatcgtcttctcggcgcagagca 6462



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>emb|AL732376.2|CNS08C8Z Oryza sativa chromosome 12, . BAC OSJNBa0086B10 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 152090

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                   
Query: 330    tccttgggccgccacgtggtcttctggacgcagagca 366
              ||||||||||||||| | ||||||| | |||||||||
Sbjct: 132064 tccttgggccgccacatcgtcttctcggcgcagagca 132028



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>gb|AC104930.9| Mus musculus chromosome 7, clone RP24-224C21, complete sequence
          Length = 156052

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 347   ggtcttctggacgcagagcagccc 370
             |||||||||||| |||||||||||
Sbjct: 34857 ggtcttctggacacagagcagccc 34880



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>gb|AY347745.1| Physcomitrella patens Snf1 related kinase 1 (SNF1b) gene, complete
            cds
          Length = 5107

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 129  cattttacaacaaatgttgtccaa 152
            |||||||||| |||||||||||||
Sbjct: 2937 cattttacaagaaatgttgtccaa 2914



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>ref|XM_993959.1| PREDICTED: Mus musculus golgi autoantigen, golgin subfamily b,
           macrogolgin 1 (Golgb1), mRNA
          Length = 10907

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 350 cttctggacgcagagcagcccttccttg 377
           |||||||| |||||||||||| ||||||
Sbjct: 475 cttctggaggcagagcagcccctccttg 448



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>ref|XM_001001861.1| PREDICTED: Mus musculus golgi autoantigen, golgin subfamily b,
            macrogolgin 1, transcript variant 9 (Golgb1), mRNA
          Length = 13115

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 350  cttctggacgcagagcagcccttccttg 377
            |||||||| |||||||||||| ||||||
Sbjct: 2770 cttctggaggcagagcagcccctccttg 2743



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>ref|XM_916950.2| PREDICTED: Mus musculus golgi autoantigen, golgin subfamily b,
           macrogolgin 1, transcript variant 7 (Golgb1), mRNA
          Length = 10927

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 350 cttctggacgcagagcagcccttccttg 377
           |||||||| |||||||||||| ||||||
Sbjct: 582 cttctggaggcagagcagcccctccttg 555



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>ref|XM_901689.2| PREDICTED: Mus musculus golgi autoantigen, golgin subfamily b,
           macrogolgin 1, transcript variant 4 (Golgb1), mRNA
          Length = 11008

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 350 cttctggacgcagagcagcccttccttg 377
           |||||||| |||||||||||| ||||||
Sbjct: 576 cttctggaggcagagcagcccctccttg 549



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>ref|XM_148244.7| PREDICTED: Mus musculus golgi autoantigen, golgin subfamily b,
           macrogolgin 1, transcript variant 1 (Golgb1), mRNA
          Length = 11104

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 350 cttctggacgcagagcagcccttccttg 377
           |||||||| |||||||||||| ||||||
Sbjct: 672 cttctggaggcagagcagcccctccttg 645



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>ref|XM_901694.2| PREDICTED: Mus musculus golgi autoantigen, golgin subfamily b,
           macrogolgin 1, transcript variant 6 (Golgb1), mRNA
          Length = 10907

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 350 cttctggacgcagagcagcccttccttg 377
           |||||||| |||||||||||| ||||||
Sbjct: 475 cttctggaggcagagcagcccctccttg 448



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>emb|CR382370.13| Zebrafish DNA sequence from clone DKEY-22O12 in linkage group 1, complete
              sequence
          Length = 257504

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 109    ttacagtacagcattacatt 128
              ||||||||||||||||||||
Sbjct: 229746 ttacagtacagcattacatt 229765



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>emb|CR388412.9| Zebrafish DNA sequence from clone CH211-69G13 in linkage group 5,
             complete sequence
          Length = 158289

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   ttacagtacagcattacatt 128
             ||||||||||||||||||||
Sbjct: 45457 ttacagtacagcattacatt 45438



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>emb|AL590240.5| Human DNA sequence from clone RP11-266I3 on chromosome X Contains a
            likely ortholog of mouse hepatoma-derived growth factor
            related protein 3 pseudogene (HDGFRP3), a novel protein
            similar to PAGE-5 protein (LOC203569), a novel protein
            similar to PAGE-5 protein (LOC139795), gene FLJ20434, a
            cytochrome c oxidase I (MTCO1) pseudogene, a G antigen,
            family D pseudogene and a CpG island, complete sequence
          Length = 130005

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 151  aagcaaaagaaagaatgaaa 170
            ||||||||||||||||||||
Sbjct: 6596 aagcaaaagaaagaatgaaa 6577



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>emb|AL513082.10| Human DNA sequence from clone RP11-229N15 on chromosome Xq24-25 Contains
              a ribosomal protein L3 (RPL3) pseudogene, complete sequence
          Length = 137154

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 149    ccaagcaaaagaaagaatga 168
              ||||||||||||||||||||
Sbjct: 103487 ccaagcaaaagaaagaatga 103468



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>emb|BX908783.8| Zebrafish DNA sequence from clone DKEY-86M2 in linkage group 25, complete
              sequence
          Length = 216800

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 109    ttacagtacagcattacatt 128
              ||||||||||||||||||||
Sbjct: 121961 ttacagtacagcattacatt 121980



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>emb|BX323796.14| Zebrafish DNA sequence from clone DKEY-106N21 in linkage group 25,
              complete sequence
          Length = 204383

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 109    ttacagtacagcattacatt 128
              ||||||||||||||||||||
Sbjct: 123959 ttacagtacagcattacatt 123940



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>emb|BX649627.10| Zebrafish DNA sequence from clone DKEY-78B7 in linkage group 3,
             complete sequence
          Length = 92147

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   ttacagtacagcattacatt 128
             ||||||||||||||||||||
Sbjct: 80765 ttacagtacagcattacatt 80746



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>emb|BX511176.6| Zebrafish DNA sequence from clone CH211-8C17 in linkage group 3, complete
              sequence
          Length = 116813

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 109    ttacagtacagcattacatt 128
              ||||||||||||||||||||
Sbjct: 103428 ttacagtacagcattacatt 103409



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>gb|AC154763.2| Mus musculus BAC clone RP24-422J16 from chromosome 16, complete
             sequence
          Length = 156818

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 350   cttctggacgcagagcagcccttccttg 377
             |||||||| |||||||||||| ||||||
Sbjct: 21425 cttctggaggcagagcagcccctccttg 21398



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>emb|CR556722.7| Zebrafish DNA sequence from clone CH211-195N12 in linkage group 13,
              complete sequence
          Length = 205873

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 205    caatgcatttgcctttttta 224
              ||||||||||||||||||||
Sbjct: 163844 caatgcatttgcctttttta 163863



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>emb|BX000435.21| Zebrafish DNA sequence from clone DKEY-12L8 in linkage group 1, complete
              sequence
          Length = 201673

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 109    ttacagtacagcattacatt 128
              ||||||||||||||||||||
Sbjct: 153044 ttacagtacagcattacatt 153025



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>gb|AC020906.6| Homo sapiens chromosome 19 clone CTB-83J15, complete sequence
          Length = 110184

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 397   gcacctcccactgcagggac 416
             ||||||||||||||||||||
Sbjct: 32046 gcacctcccactgcagggac 32027



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>gb|AC150559.31| Medicago truncatula clone mth2-67j8, complete sequence
          Length = 107641

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 216   ccttttttagcatcaacaagaatc 239
             ||||||| ||||||||||||||||
Sbjct: 97690 cctttttcagcatcaacaagaatc 97667



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>emb|AL935031.12| Zebrafish DNA sequence from clone CH211-93I23, complete sequence
          Length = 178457

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 205   caatgcatttgcctttttta 224
             ||||||||||||||||||||
Sbjct: 27275 caatgcatttgcctttttta 27294



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>emb|BX640577.17| Zebrafish DNA sequence from clone DKEY-117O14 in linkage group 14,
              complete sequence
          Length = 214178

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 109    ttacagtacagcattacatt 128
              ||||||||||||||||||||
Sbjct: 145384 ttacagtacagcattacatt 145403



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>gb|AC090573.6| Homo sapiens chromosome 8, clone RP11-440B23, complete sequence
          Length = 204032

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 147    gtccaagcaaaagaaagaat 166
              ||||||||||||||||||||
Sbjct: 107036 gtccaagcaaaagaaagaat 107055



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>dbj|AK155415.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630225N06
            product:hypothetical protein, full insert sequence
          Length = 1881

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 350  cttctggacgcagagcagcccttccttg 377
            |||||||| |||||||||||| ||||||
Sbjct: 1828 cttctggaggcagagcagcccctccttg 1801



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>gb|AC023034.9| Homo sapiens, clone RP11-499F3, complete sequence
          Length = 189732

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 152   agcaaaagaaagaatgaaag 171
             ||||||||||||||||||||
Sbjct: 68582 agcaaaagaaagaatgaaag 68601



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>gb|AC155930.3| Mus musculus BAC clone RP23-412K9 from chromosome 7, complete sequence
          Length = 187418

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 347   ggtcttctggacgcagagcagccc 370
             |||||||||||| |||||||||||
Sbjct: 32367 ggtcttctggacacagagcagccc 32344



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>dbj|AK020091.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length
           enriched library, clone:6330407A06 product:similar to
           GIANTIN (GOLGI COMPLEX-ASSOCIATED PROTEIN OF 364 KDA)
           (GCP364) [Rattus norvegicus], full insert sequence
          Length = 507

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 350 cttctggacgcagagcagcccttccttg 377
           |||||||| |||||||||||| ||||||
Sbjct: 454 cttctggaggcagagcagcccctccttg 427



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>gb|AC008394.3|AC008394 Homo sapiens chromosome 5 clone CTC_242N15, complete sequence
          Length = 171545

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 192    ttctacagctgcacaatgcatttg 215
              |||||||||||||||||| |||||
Sbjct: 157682 ttctacagctgcacaatgtatttg 157659



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>emb|BX000536.7| Zebrafish DNA sequence from clone CH211-10C6 in linkage group 7,
             complete sequence
          Length = 199752

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 220   ttttagcatcaacaagaatcatgt 243
             |||| |||||||||||||||||||
Sbjct: 47092 ttttggcatcaacaagaatcatgt 47115



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>dbj|AB025638.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MWF20
          Length = 91193

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 151   aagcaaaagaaagaatgaaa 170
             ||||||||||||||||||||
Sbjct: 64454 aagcaaaagaaagaatgaaa 64435



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>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 121    attacattcattttacaacaaatg 144
              |||||||||||||||||| |||||
Sbjct: 381838 attacattcattttacaagaaatg 381861



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>emb|BX842613.7| Zebrafish DNA sequence from clone CH211-227J9 in linkage group 19,
             complete sequence
          Length = 166128

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   ttacagtacagcattacatt 128
             ||||||||||||||||||||
Sbjct: 90961 ttacagtacagcattacatt 90942



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>emb|BX004885.4| Zebrafish DNA sequence from clone CH211-103L6, complete sequence
          Length = 187201

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   ttacagtacagcattacatt 128
             ||||||||||||||||||||
Sbjct: 39594 ttacagtacagcattacatt 39613



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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 388     aggtcatgcgcacctcccac 407
               ||||||||||||||||||||
Sbjct: 2645279 aggtcatgcgcacctcccac 2645298



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>emb|CR762424.33| Zebrafish DNA sequence from clone RP71-52E8 in linkage group 22,
             complete sequence
          Length = 178229

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   ttacagtacagcattacatt 128
             ||||||||||||||||||||
Sbjct: 16976 ttacagtacagcattacatt 16995


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,297,383
Number of Sequences: 3902068
Number of extensions: 4297383
Number of successful extensions: 91312
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91091
Number of HSP's gapped (non-prelim): 221
length of query: 440
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 418
effective length of database: 17,147,199,772
effective search space: 7167529504696
effective search space used: 7167529504696
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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