ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl31b04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY596586.1| Saccharum officinarum clone SCCCRZ2002H08, complete sequence Length = 2841 Score = 97.6 bits (49), Expect = 3e-17 Identities = 85/97 (87%) Strand = Plus / Minus Query: 330 tccttgggccgccacgtggtcttctggacgcagagcagcccttccttgcccgtggcgtag 389 ||||||||||||||| | | ||||| ||||||||||| || || |||||| ||| |||| Sbjct: 2581 tccttgggccgccacatcgacttctcgacgcagagcaagccctcgttgcccttggtgtag 2522 Query: 390 gtcatgcgcacctcccactgcagggacttcgccatgc 426 ||||| ||||||||||||||||||||||| ||||||| Sbjct: 2521 gtcattcgcacctcccactgcagggacttggccatgc 2485
>ref|XM_463541.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2421 Score = 89.7 bits (45), Expect = 7e-15 Identities = 99/117 (84%) Strand = Plus / Minus Query: 313 acatgcttgcttcgatctccttgggccgccacgtggtcttctggacgcagagcagccctt 372 |||||||||| ||||||||||||||||||||| ||| ||| ||||| || || || || | Sbjct: 2419 acatgcttgcctcgatctccttgggccgccacatggacttttggacacatagaagaccct 2360 Query: 373 ccttgcccgtggcgtaggtcatgcgcacctcccactgcagggacttcgccatgcctt 429 | || ||| ||| |||||||||||| ||||||||||| || ||||| ||||||||| Sbjct: 2359 cgttacccttggtgtaggtcatgcgaacctcccactgaagcgactttaccatgcctt 2303
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 89.7 bits (45), Expect = 7e-15 Identities = 99/117 (84%) Strand = Plus / Plus Query: 313 acatgcttgcttcgatctccttgggccgccacgtggtcttctggacgcagagcagccctt 372 |||||||||| ||||||||||||||||||||| ||| ||| ||||| || || || || | Sbjct: 38379953 acatgcttgcctcgatctccttgggccgccacatggacttttggacacatagaagaccct 38380012 Query: 373 ccttgcccgtggcgtaggtcatgcgcacctcccactgcagggacttcgccatgcctt 429 | || ||| ||| |||||||||||| ||||||||||| || ||||| ||||||||| Sbjct: 38380013 cgttacccttggtgtaggtcatgcgaacctcccactgaagcgactttaccatgcctt 38380069
>dbj|AP003561.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1065E10 Length = 183580 Score = 89.7 bits (45), Expect = 7e-15 Identities = 99/117 (84%) Strand = Plus / Plus Query: 313 acatgcttgcttcgatctccttgggccgccacgtggtcttctggacgcagagcagccctt 372 |||||||||| ||||||||||||||||||||| ||| ||| ||||| || || || || | Sbjct: 140778 acatgcttgcctcgatctccttgggccgccacatggacttttggacacatagaagaccct 140837 Query: 373 ccttgcccgtggcgtaggtcatgcgcacctcccactgcagggacttcgccatgcctt 429 | || ||| ||| |||||||||||| ||||||||||| || ||||| ||||||||| Sbjct: 140838 cgttacccttggtgtaggtcatgcgaacctcccactgaagcgactttaccatgcctt 140894
>dbj|AK119636.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-F03, full insert sequence Length = 2826 Score = 89.7 bits (45), Expect = 7e-15 Identities = 99/117 (84%) Strand = Plus / Minus Query: 313 acatgcttgcttcgatctccttgggccgccacgtggtcttctggacgcagagcagccctt 372 |||||||||| ||||||||||||||||||||| ||| ||| ||||| || || || || | Sbjct: 2557 acatgcttgcctcgatctccttgggccgccacatggacttttggacacatagaagaccct 2498 Query: 373 ccttgcccgtggcgtaggtcatgcgcacctcccactgcagggacttcgccatgcctt 429 | || ||| ||| |||||||||||| ||||||||||| || ||||| ||||||||| Sbjct: 2497 cgttacccttggtgtaggtcatgcgaacctcccactgaagcgactttaccatgcctt 2441
>dbj|AK100713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023115H24, full insert sequence Length = 2988 Score = 89.7 bits (45), Expect = 7e-15 Identities = 99/117 (84%) Strand = Plus / Minus Query: 313 acatgcttgcttcgatctccttgggccgccacgtggtcttctggacgcagagcagccctt 372 |||||||||| ||||||||||||||||||||| ||| ||| ||||| || || || || | Sbjct: 2723 acatgcttgcctcgatctccttgggccgccacatggacttttggacacatagaagaccct 2664 Query: 373 ccttgcccgtggcgtaggtcatgcgcacctcccactgcagggacttcgccatgcctt 429 | || ||| ||| |||||||||||| ||||||||||| || ||||| ||||||||| Sbjct: 2663 cgttacccttggtgtaggtcatgcgaacctcccactgaagcgactttaccatgcctt 2607
>gb|AY104480.1| Zea mays PCO099563 mRNA sequence Length = 2194 Score = 83.8 bits (42), Expect = 4e-13 Identities = 81/94 (86%) Strand = Plus / Minus Query: 333 ttgggccgccacgtggtcttctggacgcagagcagcccttccttgcccgtggcgtaggtc 392 |||||||||||| | | ||||| |||||||||||| || || ||||| ||| ||||||| Sbjct: 1883 ttgggccgccacatcgacttctcgacgcagagcaggccctcgctgcccttggtgtaggtc 1824 Query: 393 atgcgcacctcccactgcagggacttcgccatgc 426 || |||||||||||||||| |||||| ||||||| Sbjct: 1823 atccgcacctcccactgcacggacttggccatgc 1790
>emb|CT009521.5| M.truncatula DNA sequence from clone MTH2-81E13 on chromosome 3, complete sequence Length = 56728 Score = 61.9 bits (31), Expect = 2e-06 Identities = 76/91 (83%) Strand = Plus / Minus Query: 328 tctccttgggccgccacgtggtcttctggacgcagagcagcccttccttgcccgtggcgt 387 ||||||| |||||||| |||| ||||||||| || | || || ||||| || ||| || Sbjct: 16453 tctccttaggccgccaggtggacttctggacacataacaaaccctccttatccttggagt 16394 Query: 388 aggtcatgcgcacctcccactgcagggactt 418 |||||||||| ||||||||||||| |||||| Sbjct: 16393 aggtcatgcgaacctcccactgcatggactt 16363
>emb|BX248137.9| Zebrafish DNA sequence from clone DKEY-19L19, complete sequence Length = 209896 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Minus Query: 120 cattacattcattttacaacaaatgt 145 |||| ||||||||||||||||||||| Sbjct: 176545 catttcattcattttacaacaaatgt 176520
>gb|AC169379.4| Sorghum bicolor clone SB_BBc0088B22, complete sequence Length = 105215 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Minus Query: 324 tcgatctccttgggccgccacgtggtcttc 353 ||||||||| ||||||||||||| |||||| Sbjct: 95322 tcgatctccgtgggccgccacgtcgtcttc 95293
>gb|AC121264.8| Mus musculus chromosome 9, clone RP24-233F22, complete sequence Length = 194261 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 358 cgcagagcagcccttccttgc 378 ||||||||||||||||||||| Sbjct: 40255 cgcagagcagcccttccttgc 40235
>emb|CR940310.6| M.truncatula DNA sequence from clone MTH2-5D8 on chromosome 3, complete sequence Length = 121689 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 175 gaaaaacacatacatgattctacag 199 ||||||||||| ||||||||||||| Sbjct: 37638 gaaaaacacattcatgattctacag 37614
>gb|AC003119.1|HUAC003119 Human Chromosome 16 BAC clone CIT987SK-27D10, complete sequence Length = 88036 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 148 tccaagcaaaagaaagaatga 168 ||||||||||||||||||||| Sbjct: 23224 tccaagcaaaagaaagaatga 23204
>emb|X89383.1|RNSNF1KIN R.norvegicus mRNA for SNF1-related kinase Length = 3004 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 358 cgcagagcagcccttccttgc 378 ||||||||||||||||||||| Sbjct: 2355 cgcagagcagcccttccttgc 2335
>gb|AF387809.2| Mus musculus strain BALB/c SNF-1 related kinase (Snrk) mRNA, complete cds Length = 4708 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 358 cgcagagcagcccttccttgc 378 ||||||||||||||||||||| Sbjct: 2360 cgcagagcagcccttccttgc 2340
>gb|AC162794.4| Mus musculus chromosome 3, clone RP24-120B22, complete sequence Length = 139773 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 151 aagcaaaagaaagaatgaaag 171 ||||||||||||||||||||| Sbjct: 81804 aagcaaaagaaagaatgaaag 81784
>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI, complete sequence Length = 1813164 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 151 aagcaaaagaaagaatgaaaggccgaaaa 179 ||||||||||||||| |||||||| |||| Sbjct: 1363005 aagcaaaagaaagaaagaaaggccaaaaa 1362977
>dbj|AK053203.1| Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched library, clone:E030034B15 product:SNF-1 RELATED KINASE homolog [Mus musculus], full insert sequence Length = 1992 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 358 cgcagagcagcccttccttgc 378 ||||||||||||||||||||| Sbjct: 1315 cgcagagcagcccttccttgc 1295
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Minus Query: 330 tccttgggccgccacgtggtcttctggacgcagagca 366 ||||||||||||||| | ||||||| | ||||||||| Sbjct: 3970088 tccttgggccgccacatcgtcttctcggcgcagagca 3970052
>gb|BC094658.1| Mus musculus SNF related kinase, mRNA (cDNA clone MGC:101984 IMAGE:5721174), complete cds Length = 4740 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 358 cgcagagcagcccttccttgc 378 ||||||||||||||||||||| Sbjct: 2388 cgcagagcagcccttccttgc 2368
>ref|NM_138833.1| Rattus norvegicus SNF related kinase (Snrk), mRNA Length = 3004 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 358 cgcagagcagcccttccttgc 378 ||||||||||||||||||||| Sbjct: 2355 cgcagagcagcccttccttgc 2335
>ref|XM_579653.1| PREDICTED: Rattus norvegicus hypothetical LOC367880 (LOC367880), mRNA Length = 2806 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 358 cgcagagcagcccttccttgc 378 ||||||||||||||||||||| Sbjct: 2160 cgcagagcagcccttccttgc 2140
>ref|XM_579652.1| PREDICTED: Rattus norvegicus SNF related kinase (Snrk), mRNA Length = 2270 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 358 cgcagagcagcccttccttgc 378 ||||||||||||||||||||| Sbjct: 1621 cgcagagcagcccttccttgc 1601
>dbj|AK211321.1| Mus musculus cDNA, clone:Y2G0121F20, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000063498, based on BLAT search Length = 400 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 358 cgcagagcagcccttccttgc 378 ||||||||||||||||||||| Sbjct: 99 cgcagagcagcccttccttgc 79
>ref|NM_212200.1| Eremothecium gossypii AFR517Cp (AFR517C), mRNA Length = 2616 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 151 aagcaaaagaaagaatgaaaggccgaaaa 179 ||||||||||||||| |||||||| |||| Sbjct: 1333 aagcaaaagaaagaaagaaaggccaaaaa 1361
>gb|BC020189.1| Mus musculus SNF related kinase, mRNA (cDNA clone MGC:28970 IMAGE:4482701), complete cds Length = 3101 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 358 cgcagagcagcccttccttgc 378 ||||||||||||||||||||| Sbjct: 2402 cgcagagcagcccttccttgc 2382
>ref|NM_133741.1| Mus musculus SNF related kinase (Snrk), mRNA Length = 4708 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 358 cgcagagcagcccttccttgc 378 ||||||||||||||||||||| Sbjct: 2360 cgcagagcagcccttccttgc 2340
>gb|AC120394.10| Mus musculus chromosome 9, clone RP24-325N9, complete sequence Length = 206641 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 358 cgcagagcagcccttccttgc 378 ||||||||||||||||||||| Sbjct: 184055 cgcagagcagcccttccttgc 184035
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Minus Query: 330 tccttgggccgccacgtggtcttctggacgcagagca 366 ||||||||||||||| | ||||||| | ||||||||| Sbjct: 3970062 tccttgggccgccacatcgtcttctcggcgcagagca 3970026
>emb|AL731882.2|CNS08C8M Oryza sativa chromosome 12, . BAC OSJNBb0028H07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132682 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Minus Query: 330 tccttgggccgccacgtggtcttctggacgcagagca 366 ||||||||||||||| | ||||||| | ||||||||| Sbjct: 6498 tccttgggccgccacatcgtcttctcggcgcagagca 6462
>emb|AL732376.2|CNS08C8Z Oryza sativa chromosome 12, . BAC OSJNBa0086B10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 152090 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Minus Query: 330 tccttgggccgccacgtggtcttctggacgcagagca 366 ||||||||||||||| | ||||||| | ||||||||| Sbjct: 132064 tccttgggccgccacatcgtcttctcggcgcagagca 132028
>gb|AC104930.9| Mus musculus chromosome 7, clone RP24-224C21, complete sequence Length = 156052 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 347 ggtcttctggacgcagagcagccc 370 |||||||||||| ||||||||||| Sbjct: 34857 ggtcttctggacacagagcagccc 34880
>gb|AY347745.1| Physcomitrella patens Snf1 related kinase 1 (SNF1b) gene, complete cds Length = 5107 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 129 cattttacaacaaatgttgtccaa 152 |||||||||| ||||||||||||| Sbjct: 2937 cattttacaagaaatgttgtccaa 2914
>ref|XM_993959.1| PREDICTED: Mus musculus golgi autoantigen, golgin subfamily b, macrogolgin 1 (Golgb1), mRNA Length = 10907 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 350 cttctggacgcagagcagcccttccttg 377 |||||||| |||||||||||| |||||| Sbjct: 475 cttctggaggcagagcagcccctccttg 448
>ref|XM_001001861.1| PREDICTED: Mus musculus golgi autoantigen, golgin subfamily b, macrogolgin 1, transcript variant 9 (Golgb1), mRNA Length = 13115 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 350 cttctggacgcagagcagcccttccttg 377 |||||||| |||||||||||| |||||| Sbjct: 2770 cttctggaggcagagcagcccctccttg 2743
>ref|XM_916950.2| PREDICTED: Mus musculus golgi autoantigen, golgin subfamily b, macrogolgin 1, transcript variant 7 (Golgb1), mRNA Length = 10927 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 350 cttctggacgcagagcagcccttccttg 377 |||||||| |||||||||||| |||||| Sbjct: 582 cttctggaggcagagcagcccctccttg 555
>ref|XM_901689.2| PREDICTED: Mus musculus golgi autoantigen, golgin subfamily b, macrogolgin 1, transcript variant 4 (Golgb1), mRNA Length = 11008 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 350 cttctggacgcagagcagcccttccttg 377 |||||||| |||||||||||| |||||| Sbjct: 576 cttctggaggcagagcagcccctccttg 549
>ref|XM_148244.7| PREDICTED: Mus musculus golgi autoantigen, golgin subfamily b, macrogolgin 1, transcript variant 1 (Golgb1), mRNA Length = 11104 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 350 cttctggacgcagagcagcccttccttg 377 |||||||| |||||||||||| |||||| Sbjct: 672 cttctggaggcagagcagcccctccttg 645
>ref|XM_901694.2| PREDICTED: Mus musculus golgi autoantigen, golgin subfamily b, macrogolgin 1, transcript variant 6 (Golgb1), mRNA Length = 10907 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 350 cttctggacgcagagcagcccttccttg 377 |||||||| |||||||||||| |||||| Sbjct: 475 cttctggaggcagagcagcccctccttg 448
>emb|CR382370.13| Zebrafish DNA sequence from clone DKEY-22O12 in linkage group 1, complete sequence Length = 257504 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 ttacagtacagcattacatt 128 |||||||||||||||||||| Sbjct: 229746 ttacagtacagcattacatt 229765
>emb|CR388412.9| Zebrafish DNA sequence from clone CH211-69G13 in linkage group 5, complete sequence Length = 158289 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 ttacagtacagcattacatt 128 |||||||||||||||||||| Sbjct: 45457 ttacagtacagcattacatt 45438
>emb|AL590240.5| Human DNA sequence from clone RP11-266I3 on chromosome X Contains a likely ortholog of mouse hepatoma-derived growth factor related protein 3 pseudogene (HDGFRP3), a novel protein similar to PAGE-5 protein (LOC203569), a novel protein similar to PAGE-5 protein (LOC139795), gene FLJ20434, a cytochrome c oxidase I (MTCO1) pseudogene, a G antigen, family D pseudogene and a CpG island, complete sequence Length = 130005 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 aagcaaaagaaagaatgaaa 170 |||||||||||||||||||| Sbjct: 6596 aagcaaaagaaagaatgaaa 6577
>emb|AL513082.10| Human DNA sequence from clone RP11-229N15 on chromosome Xq24-25 Contains a ribosomal protein L3 (RPL3) pseudogene, complete sequence Length = 137154 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 ccaagcaaaagaaagaatga 168 |||||||||||||||||||| Sbjct: 103487 ccaagcaaaagaaagaatga 103468
>emb|BX908783.8| Zebrafish DNA sequence from clone DKEY-86M2 in linkage group 25, complete sequence Length = 216800 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 ttacagtacagcattacatt 128 |||||||||||||||||||| Sbjct: 121961 ttacagtacagcattacatt 121980
>emb|BX323796.14| Zebrafish DNA sequence from clone DKEY-106N21 in linkage group 25, complete sequence Length = 204383 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 ttacagtacagcattacatt 128 |||||||||||||||||||| Sbjct: 123959 ttacagtacagcattacatt 123940
>emb|BX649627.10| Zebrafish DNA sequence from clone DKEY-78B7 in linkage group 3, complete sequence Length = 92147 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 ttacagtacagcattacatt 128 |||||||||||||||||||| Sbjct: 80765 ttacagtacagcattacatt 80746
>emb|BX511176.6| Zebrafish DNA sequence from clone CH211-8C17 in linkage group 3, complete sequence Length = 116813 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 ttacagtacagcattacatt 128 |||||||||||||||||||| Sbjct: 103428 ttacagtacagcattacatt 103409
>gb|AC154763.2| Mus musculus BAC clone RP24-422J16 from chromosome 16, complete sequence Length = 156818 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 350 cttctggacgcagagcagcccttccttg 377 |||||||| |||||||||||| |||||| Sbjct: 21425 cttctggaggcagagcagcccctccttg 21398
>emb|CR556722.7| Zebrafish DNA sequence from clone CH211-195N12 in linkage group 13, complete sequence Length = 205873 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 caatgcatttgcctttttta 224 |||||||||||||||||||| Sbjct: 163844 caatgcatttgcctttttta 163863
>emb|BX000435.21| Zebrafish DNA sequence from clone DKEY-12L8 in linkage group 1, complete sequence Length = 201673 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 ttacagtacagcattacatt 128 |||||||||||||||||||| Sbjct: 153044 ttacagtacagcattacatt 153025
>gb|AC020906.6| Homo sapiens chromosome 19 clone CTB-83J15, complete sequence Length = 110184 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 397 gcacctcccactgcagggac 416 |||||||||||||||||||| Sbjct: 32046 gcacctcccactgcagggac 32027
>gb|AC150559.31| Medicago truncatula clone mth2-67j8, complete sequence Length = 107641 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 ccttttttagcatcaacaagaatc 239 ||||||| |||||||||||||||| Sbjct: 97690 cctttttcagcatcaacaagaatc 97667
>emb|AL935031.12| Zebrafish DNA sequence from clone CH211-93I23, complete sequence Length = 178457 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 caatgcatttgcctttttta 224 |||||||||||||||||||| Sbjct: 27275 caatgcatttgcctttttta 27294
>emb|BX640577.17| Zebrafish DNA sequence from clone DKEY-117O14 in linkage group 14, complete sequence Length = 214178 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 ttacagtacagcattacatt 128 |||||||||||||||||||| Sbjct: 145384 ttacagtacagcattacatt 145403
>gb|AC090573.6| Homo sapiens chromosome 8, clone RP11-440B23, complete sequence Length = 204032 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 gtccaagcaaaagaaagaat 166 |||||||||||||||||||| Sbjct: 107036 gtccaagcaaaagaaagaat 107055
>dbj|AK155415.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630225N06 product:hypothetical protein, full insert sequence Length = 1881 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 350 cttctggacgcagagcagcccttccttg 377 |||||||| |||||||||||| |||||| Sbjct: 1828 cttctggaggcagagcagcccctccttg 1801
>gb|AC023034.9| Homo sapiens, clone RP11-499F3, complete sequence Length = 189732 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 agcaaaagaaagaatgaaag 171 |||||||||||||||||||| Sbjct: 68582 agcaaaagaaagaatgaaag 68601
>gb|AC155930.3| Mus musculus BAC clone RP23-412K9 from chromosome 7, complete sequence Length = 187418 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 347 ggtcttctggacgcagagcagccc 370 |||||||||||| ||||||||||| Sbjct: 32367 ggtcttctggacacagagcagccc 32344
>dbj|AK020091.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length enriched library, clone:6330407A06 product:similar to GIANTIN (GOLGI COMPLEX-ASSOCIATED PROTEIN OF 364 KDA) (GCP364) [Rattus norvegicus], full insert sequence Length = 507 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 350 cttctggacgcagagcagcccttccttg 377 |||||||| |||||||||||| |||||| Sbjct: 454 cttctggaggcagagcagcccctccttg 427
>gb|AC008394.3|AC008394 Homo sapiens chromosome 5 clone CTC_242N15, complete sequence Length = 171545 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 192 ttctacagctgcacaatgcatttg 215 |||||||||||||||||| ||||| Sbjct: 157682 ttctacagctgcacaatgtatttg 157659
>emb|BX000536.7| Zebrafish DNA sequence from clone CH211-10C6 in linkage group 7, complete sequence Length = 199752 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 220 ttttagcatcaacaagaatcatgt 243 |||| ||||||||||||||||||| Sbjct: 47092 ttttggcatcaacaagaatcatgt 47115
>dbj|AB025638.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MWF20 Length = 91193 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 aagcaaaagaaagaatgaaa 170 |||||||||||||||||||| Sbjct: 64454 aagcaaaagaaagaatgaaa 64435
>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome Length = 3940880 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 attacattcattttacaacaaatg 144 |||||||||||||||||| ||||| Sbjct: 381838 attacattcattttacaagaaatg 381861
>emb|BX842613.7| Zebrafish DNA sequence from clone CH211-227J9 in linkage group 19, complete sequence Length = 166128 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 ttacagtacagcattacatt 128 |||||||||||||||||||| Sbjct: 90961 ttacagtacagcattacatt 90942
>emb|BX004885.4| Zebrafish DNA sequence from clone CH211-103L6, complete sequence Length = 187201 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 ttacagtacagcattacatt 128 |||||||||||||||||||| Sbjct: 39594 ttacagtacagcattacatt 39613
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 388 aggtcatgcgcacctcccac 407 |||||||||||||||||||| Sbjct: 2645279 aggtcatgcgcacctcccac 2645298
>emb|CR762424.33| Zebrafish DNA sequence from clone RP71-52E8 in linkage group 22, complete sequence Length = 178229 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 ttacagtacagcattacatt 128 |||||||||||||||||||| Sbjct: 16976 ttacagtacagcattacatt 16995 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,297,383 Number of Sequences: 3902068 Number of extensions: 4297383 Number of successful extensions: 91312 Number of sequences better than 10.0: 67 Number of HSP's better than 10.0 without gapping: 67 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 91091 Number of HSP's gapped (non-prelim): 221 length of query: 440 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 418 effective length of database: 17,147,199,772 effective search space: 7167529504696 effective search space used: 7167529504696 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
