ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl31a12 |
|---|---|
| Clone Library Name | barley_pub |
>DPO3_STRP8 (Q8NZB5) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII)| Length = 1465 Score = 31.6 bits (70), Expect = 0.47 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 8/70 (11%) Frame = +2 Query: 32 IKVTTGMQNQAVDWSSKRLKKNTRNCYQ--------FKYVFSTKQCTPGSTNLIHHN*RF 187 IKVT +Q VD+S L+ + ++ FK FS + T LI RF Sbjct: 72 IKVTFDIQAAQVDYSDDLLQAYYQEAFEHAPCNSASFKSSFSKLKVTYEDDKLIIAAPRF 131 Query: 188 VQNEHMFHNH 217 V N+H +NH Sbjct: 132 VNNDHFRNNH 141
>RGS6_CAEEL (Q18563) Regulator of G-protein signaling rgs-6| Length = 737 Score = 28.9 bits (63), Expect = 3.1 Identities = 17/46 (36%), Positives = 21/46 (45%) Frame = +2 Query: 185 FVQNEHMFHNHNQTPPKSTCAHARHGNASFIFGLFIRPQHNEQTLD 322 F+ F N TP K C ARH S G +RP ++ TLD Sbjct: 329 FLPANFSFKNPASTPTKLVCIRARH---SLSTGAVLRPLLHKYTLD 371
>DPO3_STRPY (P0C0B7) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII)| Length = 1465 Score = 28.9 bits (63), Expect = 3.1 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 8/70 (11%) Frame = +2 Query: 32 IKVTTGMQNQAVDWSSKRLKKNTRNCYQ--------FKYVFSTKQCTPGSTNLIHHN*RF 187 IKVT +Q VD+S L+ + ++ FK FS + T LI F Sbjct: 72 IKVTFDIQAAQVDYSDDLLQAYYQEAFEHAPCNSASFKSSFSKLKVTYEDDKLIIAAPGF 131 Query: 188 VQNEHMFHNH 217 V N+H +NH Sbjct: 132 VNNDHFRNNH 141
>DPO3_STRP6 (Q5X9U8) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII)| Length = 1465 Score = 28.9 bits (63), Expect = 3.1 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 8/70 (11%) Frame = +2 Query: 32 IKVTTGMQNQAVDWSSKRLKKNTRNCYQ--------FKYVFSTKQCTPGSTNLIHHN*RF 187 IKVT +Q VD+S L+ + ++ FK FS + T LI F Sbjct: 72 IKVTFDIQAAQVDYSDDLLQAYYQEAFEHAPCNSASFKSSFSKLKVTYEDDKLIIAAPGF 131 Query: 188 VQNEHMFHNH 217 V N+H +NH Sbjct: 132 VNNDHFRNNH 141
>DPO3_STRP3 (Q8K5S8) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII)| Length = 1465 Score = 28.9 bits (63), Expect = 3.1 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 8/70 (11%) Frame = +2 Query: 32 IKVTTGMQNQAVDWSSKRLKKNTRNCYQ--------FKYVFSTKQCTPGSTNLIHHN*RF 187 IKVT +Q VD+S L+ + ++ FK FS + T LI F Sbjct: 72 IKVTFDIQAAQVDYSDDLLQAYYQEAFEHAPCNSASFKSSFSKLKVTYEDDKLIIAAPGF 131 Query: 188 VQNEHMFHNH 217 V N+H +NH Sbjct: 132 VNNDHFRNNH 141
>DPO3_STRP1 (P0C0B8) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII)| Length = 1465 Score = 28.9 bits (63), Expect = 3.1 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 8/70 (11%) Frame = +2 Query: 32 IKVTTGMQNQAVDWSSKRLKKNTRNCYQ--------FKYVFSTKQCTPGSTNLIHHN*RF 187 IKVT +Q VD+S L+ + ++ FK FS + T LI F Sbjct: 72 IKVTFDIQAAQVDYSDDLLQAYYQEAFEHAPCNSASFKSSFSKLKVTYEDDKLIIAAPGF 131 Query: 188 VQNEHMFHNH 217 V N+H +NH Sbjct: 132 VNNDHFRNNH 141
>CDK7_MOUSE (Q03147) Cell division protein kinase 7 (EC 2.7.11.22) (EC| 2.7.11.23) (CDK-activating kinase) (CAK) (TFIIH basal transcription factor complex kinase subunit) (39 kDa protein kinase) (P39 Mo15) (Protein-tyrosine kinase MPK-7) (CR4 protein kinas Length = 346 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 6/36 (16%) Frame = +3 Query: 180 EDLFKMNTCFITT------TKLPPSRPAPTPGMEMP 269 + LF N C TT TK +RP PTPG ++P Sbjct: 273 QGLFLFNPCTRTTASQALKTKYFSNRPGPTPGCQLP 308
>AP1M_DISOM (P47795) AP-1 complex subunit mu (Clathrin coat assembly protein| AP47 homolog) (Clathrin coat-associated protein AP47 homolog) (Golgi adaptor AP-1 47 kDa protein homolog) (HA1 47 kDa subunit homolog) (Clathrin assembly protein assembly protein Length = 418 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = -1 Query: 378 HTLFDLDGGMAVLLVPPWTSRVCSLCCGLMNKPKIKLAFP 259 H+LF ++GG AV L W S V C + + ++K P Sbjct: 3 HSLFLMNGGGAVFLEKHWRSVVSRSVCAYLLEAQLKAGQP 42
>KPYK_CLOAB (O08309) Pyruvate kinase (EC 2.7.1.40) (PK)| Length = 473 Score = 28.5 bits (62), Expect = 4.0 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Frame = +1 Query: 31 NKGHYRYAKPGSRL-VEQKIKKKYSKLLPVQICF*HKAMYTRLYQFNPPQLKI 186 N H +A+ G R+ + +K++ K +K PV IC K R FNP +L++ Sbjct: 34 NFSHGDHAEHGGRIALVKKVRAKLNK--PVAICLDTKGPEIRTGDFNPSKLEL 84
>GLT1_SCHPO (Q9C102) Putative glutamate synthase [NADPH] (EC 1.4.1.13)| (NADPH-GOGAT) Length = 2111 Score = 28.1 bits (61), Expect = 5.2 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 3/51 (5%) Frame = -1 Query: 369 FDLDGGMAVLL--VPPWTSRVCSLCCGLMNKPKIKL-AFPCLAWAQVDLGG 226 FD D A+ + V PWT V C G M+ I + + LA A LGG Sbjct: 920 FDFDSSQAIPIEQVEPWTEIVRRFCTGAMSYGSISMESHSSLAIAMNRLGG 970
>GP109_RAT (Q80Z39) Nicotinic acid receptor (G-protein coupled receptor 109)| (G-protein coupled receptor HM74) (Protein PUMA-G) Length = 360 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = -1 Query: 147 VHCFVLKTYLNW*QFRVFFFNLLLDQSTAWFCIPVVTFIY 28 + CF LK+ W R+F FNL + C+P +T Y Sbjct: 48 IFCFHLKS---WKSSRIFLFNLAVADFLLIICLPFLTDNY 84
>GP109_MOUSE (Q9EP66) Nicotinic acid receptor (G-protein coupled receptor 109)| (G-protein coupled receptor HM74) (Protein PUMA-G) Length = 360 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = -1 Query: 147 VHCFVLKTYLNW*QFRVFFFNLLLDQSTAWFCIPVVTFIY 28 + CF LK+ W R+F FNL + C+P +T Y Sbjct: 48 IFCFHLKS---WKSSRIFLFNLAVADFLLIICLPFLTDNY 84
>INX10_CAEEL (Q22549) Innexin-10| Length = 559 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/56 (26%), Positives = 28/56 (50%) Frame = +2 Query: 89 KKNTRNCYQFKYVFSTKQCTPGSTNLIHHN*RFVQNEHMFHNHNQTPPKSTCAHAR 256 K+N +N Q Y ++ + TP + N +QN++ + N+ +TP S +R Sbjct: 490 KQNQQNATQPPYCYTNQNPTP------YQNQNQIQNQNQYSNYYRTPSLSRGTDSR 539
>G109B_HUMAN (P49019) Nicotinic acid receptor 2 (G-protein coupled receptor| 109B) (G-protein coupled receptor HM74) (G-protein coupled receptor HM74B) Length = 387 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/40 (35%), Positives = 19/40 (47%) Frame = -1 Query: 147 VHCFVLKTYLNW*QFRVFFFNLLLDQSTAWFCIPVVTFIY 28 + CF LK+ W R+F FNL + C+P V Y Sbjct: 51 IFCFHLKS---WKSSRIFLFNLAVADFLLIICLPFVMDYY 87
>VL2_HPV31 (P17389) Minor capsid protein L2| Length = 466 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/60 (26%), Positives = 28/60 (46%) Frame = +3 Query: 111 TSSNMFLAQSNVHQALPI*STTTEDLFKMNTCFITTTKLPPSRPAPTPGMEMPALFSVYS 290 TS ++ L+ S++ ST + M+T ++T + P PG+ PA +YS Sbjct: 172 TSGHLLLSSSSI-------STHNYEEIPMDTFIVSTNNENITSSTPIPGVRRPARLGLYS 224
>NUKM_BRAOL (P42027) NADH-ubiquinone oxidoreductase 20 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-20KD) (CI-20KD) Length = 215 Score = 27.3 bits (59), Expect = 8.9 Identities = 20/62 (32%), Positives = 27/62 (43%) Frame = +3 Query: 99 LEIATSSNMFLAQSNVHQALPI*STTTEDLFKMNTCFITTTKLPPSRPAPTPGMEMPALF 278 L + S+ A S++H +LP S T T T PPS AP PG+ A F Sbjct: 12 LPLVLQSHRAAAVSHLHTSLPALSPAT-------TPTSYTRPGPPSTSAPPPGLSKTAEF 64 Query: 279 SV 284 + Sbjct: 65 VI 66
>RPOA_SACOF (Q6ENT2) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 339 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = +3 Query: 99 LEIATSSNMFLAQSNVHQALPI*STTTEDLFKMNTCFITTTKL 227 LE+ + + L ++N+H L + S T EDL ++N+ + KL Sbjct: 277 LELPSRTYNCLKRANIHTLLDLLSKTEEDLMRINSFRMEDGKL 319
>RPOA_SACHY (Q6L370) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 339 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = +3 Query: 99 LEIATSSNMFLAQSNVHQALPI*STTTEDLFKMNTCFITTTKL 227 LE+ + + L ++N+H L + S T EDL ++N+ + KL Sbjct: 277 LELPSRTYNCLKRANIHTLLDLLSKTEEDLMRINSFRMEDGKL 319 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,397,540 Number of Sequences: 219361 Number of extensions: 1352299 Number of successful extensions: 3631 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3507 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3627 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
