ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl31a10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IF4E3_ARATH (Q9FK59) Eukaryotic translation initiation factor 4E... 68 5e-12
2IF4E4_CAEEL (Q22888) Eukaryotic translation initiation factor 4E... 37 0.013

>IF4E3_ARATH (Q9FK59) Eukaryotic translation initiation factor 4E type 3 (eIF4E|
           type 3) (eIF-4E type 3) (mRNA cap-binding protein type
           3) (Novel cap-binding protein) (nCBP)
          Length = 221

 Score = 68.2 bits (165), Expect = 5e-12
 Identities = 29/31 (93%), Positives = 30/31 (96%)
 Frame = -1

Query: 254 LKLPHTYLMEYKPHDASLRDNSSYRNTWLRG 162
           LKLPH Y+MEYKPHDASLRDNSSYRNTWLRG
Sbjct: 191 LKLPHAYVMEYKPHDASLRDNSSYRNTWLRG 221



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>IF4E4_CAEEL (Q22888) Eukaryotic translation initiation factor 4E-4 (eIF4E-4)|
           (eIF-4E-4) (mRNA cap-binding protein) (eIF-4F 25 kDa
           subunit)
          Length = 212

 Score = 37.0 bits (84), Expect = 0.013
 Identities = 16/27 (59%), Positives = 20/27 (74%)
 Frame = -1

Query: 254 LKLPHTYLMEYKPHDASLRDNSSYRNT 174
           L+LP   ++EYK HD  LRD SSYR+T
Sbjct: 180 LQLPQNTVLEYKRHDDCLRDQSSYRHT 206


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,551,758
Number of Sequences: 219361
Number of extensions: 631365
Number of successful extensions: 1333
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1333
length of database: 80,573,946
effective HSP length: 60
effective length of database: 67,412,286
effective search space used: 1617894864
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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