ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl31a09 |
|---|---|
| Clone Library Name | barley_pub |
>CDD_ERWCT (Q6D3B4) Cytidine deaminase (EC 3.5.4.5) (Cytidine aminohydrolase)| (CDA) Length = 296 Score = 32.0 bits (71), Expect = 0.36 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Frame = +3 Query: 264 LANPIPS-MKYQLLFPHCNGVETNWRVFSLIMFEIGCQPISHGFL 395 LA PS +KY + N V ++W + +++ E+GC + H F+ Sbjct: 250 LAGEDPSTIKYAAVVERRNAVVSHWAISQIMLAELGCTDVEHHFI 294
>ATL1N_ARATH (Q84W40) RING-H2 finger protein ATL1N precursor| Length = 404 Score = 31.2 bits (69), Expect = 0.61 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%) Frame = -3 Query: 164 CEICLRYVDSSKFFRMFMTCCHL-HSACIN-FVRMFITC 54 C +CL + + R+ CCH+ H CI+ ++R TC Sbjct: 144 CSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLRSHTTC 182
>IPP_MOUSE (P28575) Actin-binding protein IPP (MIPP protein) (Murine| IAP-promoted placenta-expressed protein) Length = 584 Score = 30.8 bits (68), Expect = 0.80 Identities = 16/54 (29%), Positives = 28/54 (51%) Frame = -3 Query: 278 DGIRQGELH*AFSVLVEEVCGICLRYVDSSKSLLVKEGCEICLRYVDSSKFFRM 117 +G+ L A L++E C +C ++ L+KE CE+C + +KF R+ Sbjct: 241 EGVSDFNLRVALQTLLKEYCEVCKSPKENKFCRLLKEYCEVC-KSPKENKFCRV 293
>CERU_RAT (P13635) Ceruloplasmin precursor (EC 1.16.3.1) (Ferroxidase)| Length = 1059 Score = 30.0 bits (66), Expect = 1.4 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 6/88 (6%) Frame = +1 Query: 61 MNILTKLIHAECR*QQVINILKNFELSTY------LKQISQPSFTNKDFELSTYLKQIPQ 222 + +L LIHA+ +V + KN Y +K S E+ TY+ QIP+ Sbjct: 799 LGMLGPLIHADVG-AKVKVVFKNMATRPYSIHAHGVKTKSSTVAPTLPGEVRTYIWQIPE 857 Query: 223 TSSTNTEKAQCSSPWRIPSPV*NISSFF 306 S TE + C PW S V + + Sbjct: 858 RSGAGTEDSPC-IPWAYYSTVDRVKDLY 884
>HIPK3_MOUSE (Q9ERH7) Homeodomain-interacting protein kinase 3 (EC 2.7.11.1)| (Fas-interacting serine/threonine-protein kinase) (FIST) (Nuclear body-associated kinase 3) (Nbak3) (Androgen receptor-interacting nuclear protein kinase) (ANPK) Length = 1192 Score = 30.0 bits (66), Expect = 1.4 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +3 Query: 261 TLANPIPSMKYQLLFPHCNGVETNWRVFSLIMFEIGCQPISH 386 TL +P +MK+ L FPH N V++ + + + C+ +H Sbjct: 519 TLNHPFVNMKHLLDFPHSNHVKSCFHIMDICKSPSSCETNNH 560
>ATL1C_ARATH (Q9SK92) RING-H2 finger protein ATL1C precursor (RING-H2 finger| protein ATL15) Length = 381 Score = 30.0 bits (66), Expect = 1.4 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%) Frame = -3 Query: 164 CEICLRYVDSSKFFRMFMTCCHL-HSACIN-FVRMFITC 54 C +CL + + R+ CCH+ H CI+ ++R TC Sbjct: 118 CPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLRSQTTC 156
>HIPK3_RAT (O88850) Homeodomain-interacting protein kinase 3 (EC 2.7.11.1)| (Androgen receptor-interacting nuclear protein kinase) (ANPK) Length = 1191 Score = 29.3 bits (64), Expect = 2.3 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +3 Query: 261 TLANPIPSMKYQLLFPHCNGVETNWRVFSLIMFEIGCQPISH 386 TL +P SMK+ L FPH + V++ + + + C+ +H Sbjct: 519 TLNHPFVSMKHLLDFPHSSHVKSCFHIMDICKSPSSCETNNH 560
>DBP6_YEAST (P53734) ATP-dependent RNA helicase DBP6 (EC 3.6.1.-) (DEAD box| protein 6) Length = 629 Score = 29.3 bits (64), Expect = 2.3 Identities = 15/33 (45%), Positives = 16/33 (48%) Frame = +1 Query: 148 LKQISQPSFTNKDFELSTYLKQIPQTSSTNTEK 246 LKQI QP F L+T Q T NTEK Sbjct: 131 LKQIPQPEFVKNPMNLNTNSLQFKSTGWLNTEK 163
>ALG6_DROME (Q9VKX7) Probable dolichyl pyrophosphate Man9GlcNAc2| alpha-1,3-glucosyltransferase (EC 2.4.1.-) (Dolichyl-P-Glc:Man9GlcNAc2-PP-dolichyl glucosyltransferase) Length = 475 Score = 28.9 bits (63), Expect = 3.0 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = -2 Query: 315 YSEEKGADISYWGWDSPR*TALSFFCVGR 229 Y+ D+ YWG D P TA + VGR Sbjct: 55 YTNSSNNDLQYWGLDYPPLTAYHSYLVGR 83
>RPB1_YEAST (P04050) DNA-directed RNA polymerase II largest subunit (EC| 2.7.7.6) (RNA polymerase II subunit 1) (B220) Length = 1733 Score = 28.9 bits (63), Expect = 3.0 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Frame = +1 Query: 121 LKNFELSTYLKQISQPSFTNKDFELSTYLKQIPQTSSTNTEKAQ-CSSPWRIPSP 282 +K ST+ +S S N DF+ +PQ+ T E +Q C+ P +I SP Sbjct: 460 VKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSP 514
>UL25_SHV21 (Q01004) Virion gene 19 protein| Length = 543 Score = 28.9 bits (63), Expect = 3.0 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Frame = +2 Query: 167 LPSPTKILSYLHISSKFHRLPRPTQKKLNA--VHLGESHPQYEISAPFSSL*WSRNQLAS 340 LPSP K LS S +PT K N + + P + + + F + +L S Sbjct: 105 LPSPPKPLSPTTQS-------QPTNFKTNVYTITVAPGDPGFTVESNF------KIELVS 151 Query: 341 FLLDHVRDWLPAHQPW 388 L + + WLP++ PW Sbjct: 152 SLYTNQQQWLPSYGPW 167
>VPS1_YEAST (P21576) Vacuolar sorting protein 1| Length = 704 Score = 28.9 bits (63), Expect = 3.0 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = +2 Query: 269 ESHPQYEISAPFSSL*WSRNQLASFLLDHVRDWLP 373 E+HP Y A + + +L S LL H+R LP Sbjct: 302 ENHPSYSSKAHYCGTPYLAKKLNSILLHHIRQTLP 336
>RPB1_ASHGO (Q75A34) DNA-directed RNA polymerase II largest subunit (EC| 2.7.7.6) (RNA polymerase II subunit 1) Length = 1745 Score = 28.9 bits (63), Expect = 3.0 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Frame = +1 Query: 121 LKNFELSTYLKQISQPSFTNKDFELSTYLKQIPQTSSTNTEKAQ-CSSPWRIPSP 282 +K ST+ +S S N DF+ +PQ+ T E +Q C+ P +I SP Sbjct: 460 VKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSP 514
>REC10_SCHPO (Q09823) Meiotic recombination protein rec10| Length = 791 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%) Frame = +1 Query: 115 NILKNFELSTYLKQISQPSFT--NKDFELSTYLKQIPQTSSTNTEKAQCSSP 264 ++ K + KQ S+P T ++ +LST++KQ + T+ CSSP Sbjct: 601 SVWKELLKEKHWKQESKPQLTGNSRQIDLSTFVKQANTPNITSLLDGTCSSP 652
>YCG2_SCHPO (O74447) Hypothetical protein C16C4.02c in chromosome III| Length = 548 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/53 (26%), Positives = 28/53 (52%) Frame = -3 Query: 227 EVCGICLRYVDSSKSLLVKEGCEICLRYVDSSKFFRMFMTCCHLHSACINFVR 69 EV G+ +RY+ E C++ + ++ KFF++ + L S ++F+R Sbjct: 340 EVLGLLIRYLC--------ENCDVLAQRIEPDKFFQLQRSLTELFSDTMDFLR 384
>GUC2G_RAT (P55205) Guanylate cyclase 2G precursor (EC 4.6.1.2) (Guanylyl| cyclase receptor G) (GC-G) (Kinase-like domain-containing soluble guanylyl cyclase) (ksGC) Length = 1100 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/42 (35%), Positives = 23/42 (54%) Frame = +2 Query: 179 TKILSYLHISSKFHRLPRPTQKKLNAVHLGESHPQYEISAPF 304 ++ L +LH S F ++ RP + LNA SHP+Y+ F Sbjct: 420 SRFLPFLHYDS-FQKVIRPWRDDLNASGPHGSHPEYKPDCGF 460
>DPOL_ADE05 (P04495) DNA polymerase (EC 2.7.7.7)| Length = 1056 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = -3 Query: 383 ADGLAANLEHDQGENSPIGFYSITVRK 303 A LAANL D+ E P+ FY IT K Sbjct: 174 ARDLAANLGWDRWEQDPLTFYCITPEK 200
>GSPM_AERHY (P41850) General secretion pathway protein M| Length = 163 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/21 (52%), Positives = 17/21 (80%) Frame = -1 Query: 385 WLMGWQPISNMIKEKTRQLVS 323 W++ WQPI+N I E+ RQ++S Sbjct: 34 WIV-WQPIANRIAERERQVLS 53
>ATL4I_ARATH (O49691) Putative RING-H2 finger protein ATL4I| Length = 289 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%) Frame = -3 Query: 164 CEICLRYVDSSKFFRMFMTCCHL-HSACIN 78 C ICL D R+ TC H+ H CI+ Sbjct: 110 CAICLLEFDGDHVLRLLTTCYHVFHQECID 139
>KPK7_ARATH (Q05999) Putative serine/threonine-protein kinase PK7 (EC 2.7.11.1)| Length = 578 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = +1 Query: 196 STYLKQIPQTSSTNTEKAQCSSPWRIPSPV 285 +T +KQ P S N +C+SP +IP PV Sbjct: 507 ATEIKQHPFFQSVNWALIRCTSPPQIPQPV 536
>SETB1_MOUSE (O88974) Histone-lysine N-methyltransferase, H3 lysine-9 specific 4| (EC 2.1.1.43) (Histone H3-K9 methyltransferase 4) (H3-K9-HMTase 4) (SET domain bifurcated 1) (ERG-associated protein with SET domain) (ESET) Length = 1307 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/29 (34%), Positives = 17/29 (58%) Frame = -3 Query: 245 FSVLVEEVCGICLRYVDSSKSLLVKEGCE 159 F V+ + CG+CLR + + L + GC+ Sbjct: 640 FHVIYKTPCGLCLRTMQEIERYLFETGCD 668
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein type 3| Length = 1333 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/37 (29%), Positives = 20/37 (54%) Frame = -3 Query: 386 MADGLAANLEHDQGENSPIGFYSITVRKKELIFHTGD 276 +A G + +HD + P+G+YS + K +L + D Sbjct: 717 VAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSD 753
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein type 2| Length = 1333 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/37 (29%), Positives = 20/37 (54%) Frame = -3 Query: 386 MADGLAANLEHDQGENSPIGFYSITVRKKELIFHTGD 276 +A G + +HD + P+G+YS + K +L + D Sbjct: 717 VAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSD 753
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein type 1| Length = 1333 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/37 (29%), Positives = 20/37 (54%) Frame = -3 Query: 386 MADGLAANLEHDQGENSPIGFYSITVRKKELIFHTGD 276 +A G + +HD + P+G+YS + K +L + D Sbjct: 717 VAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSD 753
>SETB1_HUMAN (Q15047) Histone-lysine N-methyltransferase, H3 lysine-9 specific 4| (EC 2.1.1.43) (Histone H3-K9 methyltransferase 4) (H3-K9-HMTase 4) (SET domain bifurcated 1) (ERG-associated protein with SET domain) (ESET) Length = 1291 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/29 (34%), Positives = 17/29 (58%) Frame = -3 Query: 245 FSVLVEEVCGICLRYVDSSKSLLVKEGCE 159 F V+ + CG+CLR + + L + GC+ Sbjct: 623 FHVIYKTPCGLCLRTMQEIERYLFETGCD 651
>ATL1A_ARATH (P93823) RING-H2 finger protein ATL1A| Length = 381 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Frame = -3 Query: 197 DSSKSLLVKEGCEICLRYVDSSKFFRMFMTCCHL-HSACIN 78 D SK+ + C +CL + R+ CCH+ H CI+ Sbjct: 126 DQSKN---SQECSVCLNEFQEDEKLRIIPNCCHVFHIDCID 163 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,252,284 Number of Sequences: 219361 Number of extensions: 1103795 Number of successful extensions: 3524 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 3387 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3523 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 1349397000 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
