ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl31a09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_193788.1| Oryza sativa (japonica cultivar-group), predic... 80 6e-12
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 80 6e-12
3dbj|AP003202.3| Oryza sativa (japonica cultivar-group) genomic D... 80 6e-12
4dbj|AP002970.2| Oryza sativa (japonica cultivar-group) genomic D... 80 6e-12
5dbj|AK103077.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 6e-12
6gb|AF272750.1|AF272750 Zea mays kinesin heavy chain (KIN2) mRNA,... 46 0.089
7gb|AC122241.4| Mus musculus BAC clone RP23-146M20 from chromosom... 42 1.4
8gb|AC166356.1| Mus musculus BAC clone RP23-410F8 from chromosome... 42 1.4
9emb|AL596170.1| Listeria innocua Clip11262 complete genome, segm... 42 1.4
10emb|CR354561.11| Zebrafish DNA sequence from clone DKEY-203K18 i... 42 1.4
11emb|AL672307.9| Mouse DNA sequence from clone RP23-141N2 on chro... 42 1.4
12gb|BC007143.1| Mus musculus macrophage activation 2 like, mRNA (... 40 5.5
13gb|AC123697.19| Mus musculus chromosome 5, clone RP23-329M7, com... 40 5.5
14ref|NM_008620.2| Mus musculus macrophage activation 2 (Mpa2), mRNA 40 5.5
15ref|XM_001003355.1| PREDICTED: Mus musculus similar to macrophag... 40 5.5
16ref|NM_172777.1| Mus musculus cDNA sequence BC057170 (BC057170),... 40 5.5
17ref|XM_001006068.1| PREDICTED: Mus musculus macrophage activatio... 40 5.5
18ref|XM_001005776.1| PREDICTED: Mus musculus similar to guanylate... 40 5.5
19ref|XM_001005367.1| PREDICTED: Mus musculus similar to macrophag... 40 5.5
20ref|XM_987614.1| PREDICTED: Mus musculus similar to macrophage a... 40 5.5
21ref|XM_987524.1| PREDICTED: Mus musculus similar to macrophage a... 40 5.5
22ref|XM_987723.1| PREDICTED: Mus musculus similar to macrophage a... 40 5.5
23ref|XM_987685.1| PREDICTED: Mus musculus similar to macrophage a... 40 5.5
24ref|XM_987560.1| PREDICTED: Mus musculus similar to macrophage a... 40 5.5
25ref|XM_987647.1| PREDICTED: Mus musculus similar to macrophage a... 40 5.5
26ref|XM_987820.1| PREDICTED: Mus musculus similar to macrophage a... 40 5.5
27ref|XM_987759.1| PREDICTED: Mus musculus similar to macrophage a... 40 5.5
28ref|XM_987793.1| PREDICTED: Mus musculus similar to macrophage a... 40 5.5
29gb|AC121811.2| Mus musculus BAC clone RP23-453O15 from 5, comple... 40 5.5
30gb|DQ139262.1| Odontoglossum ringspot virus strain Taiwan, compl... 40 5.5
31gb|AC146175.1| Pan troglodytes BAC clone CH251-559G23 from Y, co... 40 5.5
32gb|AC145769.1| Pan troglodytes BAC clone CH251-203H3 from Y, com... 40 5.5
33gb|BC052867.1| Mus musculus macrophage activation 2 like, mRNA (... 40 5.5
34gb|BC114209.1| Mus musculus similar to macrophage activation 2 l... 40 5.5
35gb|BC112328.1| Mus musculus similar to macrophage activation 2 l... 40 5.5
36emb|AL591506.24| Human DNA sequence from clone RP11-112N13 on ch... 40 5.5
37emb|AL591175.6| Zebrafish DNA sequence from clone BUSM1-37I06 in... 40 5.5
38dbj|AK220567.1| Mus musculus mRNA for mKIAA4245 protein 40 5.5
39dbj|BS000607.1| Pan troglodytes chromosome Y clone:PTB-081L16, c... 40 5.5
40dbj|BS000558.1| Pan troglodytes chromosome Y clone:PTB-471H19, c... 40 5.5
41gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 5.5
42gb|AC118584.18| Papio anubis clone rp41-78d16, complete sequence 40 5.5
43gb|AC117273.41| Papio anubis clone rp41-167h10, complete sequence 40 5.5
44ref|NM_001039646.1| Mus musculus similar to macrophage activatio... 40 5.5
45gb|AC091067.6| Homo sapiens chromosome 18, clone RP11-702M18, co... 40 5.5
46ref|XM_679264.1| PREDICTED: Danio rerio similar to cardiac calci... 40 5.5
47dbj|AK165231.1| Mus musculus 6 days neonate spleen cDNA, RIKEN f... 40 5.5
48dbj|AK171913.1| Mus musculus activated spleen cDNA, RIKEN full-l... 40 5.5
49gb|AC026788.4| Homo sapiens chromosome 5 clone CTD-2164M17, comp... 40 5.5
50gb|AC022441.5| Homo sapiens chromosome 5 clone RP11-317O24, comp... 40 5.5
51gb|AC132308.4| Mus musculus BAC clone RP24-292O13 from chromosom... 40 5.5
52dbj|AK088861.1| Mus musculus 2 days neonate thymus thymic cells ... 40 5.5
53dbj|AK017988.1| Mus musculus adult male thymus cDNA, RIKEN full-... 40 5.5
54gb|BC080665.1| Mus musculus RIKEN cDNA 5830443L24 gene, mRNA (cD... 40 5.5
55dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
56gb|AC007275.4|AC007275 Homo sapiens BAC clone RP11-109F19 from Y... 40 5.5
57gb|AC175464.1| Mus musculus BAC clone RP23-129E4 from chromosome... 40 5.5
58gb|AC008831.7|AC008831 Homo sapiens chromosome 5 clone CTD-2146K... 40 5.5
59dbj|AP005067.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
60gb|AC119900.7| Mus musculus chromosome 8, clone RP24-235K6, comp... 40 5.5
61emb|AL591442.2| Zebrafish DNA sequence from clone BUSM1-228J01 i... 40 5.5
62gb|AC113980.29| Mus musculus chromosome 5, clone RP24-63G23, com... 40 5.5
63gb|BC031475.1| Mus musculus RIKEN cDNA 5830443L24 gene, mRNA (cD... 40 5.5
64ref|NM_029509.3| Mus musculus RIKEN cDNA 5830443L24 gene (583044... 40 5.5
65emb|AL591180.4| Zebrafish DNA sequence from clone BUSM1-243A08 i... 40 5.5
66gb|BC057170.1| Mus musculus cDNA sequence BC057170, mRNA (cDNA c... 40 5.5
67gb|DQ295175.1| Mus musculus guanylate binding protein 8 (mGBP8) ... 40 5.5
68dbj|AP004967.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 5.5
69gb|AC144914.18| Mus musculus chromosome 5, clone RP24-210D14, co... 40 5.5
70gb|M81128.1|MUSGBPMA Mouse putative guanylate binding protein mR... 40 5.5 
>ref|NM_193788.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2865

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 58/64 (90%)
 Strand = Plus / Minus

                                                                        
Query: 342  ttctccttgatcatgttcgagattggctgccagcccatcagccatggcttcctactcgca 401
            |||||| |||||||||| || || |||||||| ||||||||||||||||||||||| |||
Sbjct: 2849 ttctccctgatcatgtttgaaatgggctgccaacccatcagccatggcttcctacttgca 2790

                
Query: 402  ggga 405
            ||||
Sbjct: 2789 ggga 2786
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 58/64 (90%)
 Strand = Plus / Minus

                                                                            
Query: 342      ttctccttgatcatgttcgagattggctgccagcccatcagccatggcttcctactcgca 401
                |||||| |||||||||| || || |||||||| ||||||||||||||||||||||| |||
Sbjct: 18153329 ttctccctgatcatgtttgaaatgggctgccaacccatcagccatggcttcctacttgca 18153270

                    
Query: 402      ggga 405
                ||||
Sbjct: 18153269 ggga 18153266
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>dbj|AP003202.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:B1075D06
          Length = 130528

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 58/64 (90%)
 Strand = Plus / Minus

                                                                        
Query: 342  ttctccttgatcatgttcgagattggctgccagcccatcagccatggcttcctactcgca 401
            |||||| |||||||||| || || |||||||| ||||||||||||||||||||||| |||
Sbjct: 4774 ttctccctgatcatgtttgaaatgggctgccaacccatcagccatggcttcctacttgca 4715

                
Query: 402  ggga 405
            ||||
Sbjct: 4714 ggga 4711
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>dbj|AP002970.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0504D03
          Length = 139201

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 58/64 (90%)
 Strand = Plus / Minus

                                                                          
Query: 342    ttctccttgatcatgttcgagattggctgccagcccatcagccatggcttcctactcgca 401
              |||||| |||||||||| || || |||||||| ||||||||||||||||||||||| |||
Sbjct: 129770 ttctccctgatcatgtttgaaatgggctgccaacccatcagccatggcttcctacttgca 129711

                  
Query: 402    ggga 405
              ||||
Sbjct: 129710 ggga 129707
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>dbj|AK103077.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033118E11, full
            insert sequence
          Length = 3779

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 58/64 (90%)
 Strand = Plus / Minus

                                                                        
Query: 342  ttctccttgatcatgttcgagattggctgccagcccatcagccatggcttcctactcgca 401
            |||||| |||||||||| || || |||||||| ||||||||||||||||||||||| |||
Sbjct: 3155 ttctccctgatcatgtttgaaatgggctgccaacccatcagccatggcttcctacttgca 3096

                
Query: 402  ggga 405
            ||||
Sbjct: 3095 ggga 3092
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>gb|AF272750.1|AF272750 Zea mays kinesin heavy chain (KIN2) mRNA, partial cds
          Length = 2598

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 51/59 (86%), Gaps = 1/59 (1%)
 Strand = Plus / Minus

                                                                       
Query: 342  ttctccttgatcatgttcgagattggctgcc-agcccatcagccatggcttcctactcg 399
            |||||| |||||||||||||||| || |||| |||||| |||||| ||| |||| ||||
Sbjct: 2273 ttctccctgatcatgttcgagatgggttgccaagcccaccagccacggcctcctgctcg 2215
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>gb|AC122241.4| Mus musculus BAC clone RP23-146M20 from chromosome 15, complete
             sequence
          Length = 195429

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 298   tcctttttcctcactgtaatg 318
             |||||||||||||||||||||
Sbjct: 89887 tcctttttcctcactgtaatg 89867
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>gb|AC166356.1| Mus musculus BAC clone RP23-410F8 from chromosome 15, complete sequence
          Length = 165082

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 298    tcctttttcctcactgtaatg 318
              |||||||||||||||||||||
Sbjct: 129037 tcctttttcctcactgtaatg 129017
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>emb|AL596170.1| Listeria innocua Clip11262 complete genome, segment 8/12
          Length = 313450

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 30     gttattttcatccaatgatca 50
              |||||||||||||||||||||
Sbjct: 199007 gttattttcatccaatgatca 198987
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>emb|CR354561.11| Zebrafish DNA sequence from clone DKEY-203K18 in linkage group 25,
             complete sequence
          Length = 163175

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 76    aaattaatacatgcagaatgt 96
             |||||||||||||||||||||
Sbjct: 17134 aaattaatacatgcagaatgt 17154
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>emb|AL672307.9| Mouse DNA sequence from clone RP23-141N2 on chromosome 2, complete
             sequence
          Length = 206168

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 65    acattcttacaaaattaatac 85
             |||||||||||||||||||||
Sbjct: 63229 acattcttacaaaattaatac 63209
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>gb|BC007143.1| Mus musculus macrophage activation 2 like, mRNA (cDNA clone
            IMAGE:3495728), containing frame-shift errors
          Length = 4193

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 380  cagccatggcttcctactcgcagg 403
            ||||||||||||||| ||||||||
Sbjct: 1027 cagccatggcttccttctcgcagg 1004
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>gb|AC123697.19| Mus musculus chromosome 5, clone RP23-329M7, complete sequence
          Length = 183171

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 380    cagccatggcttcctactcgcagg 403
              ||||||||||||||| ||||||||
Sbjct: 151421 cagccatggcttccttctcgcagg 151444



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 380   cagccatggcttcctactcgcagg 403
             ||||||||||||||| ||||||||
Sbjct: 95620 cagccatggcttccttctcgcagg 95643
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>ref|NM_008620.2| Mus musculus macrophage activation 2 (Mpa2), mRNA
          Length = 2665

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 380  cagccatggcttcctactcgcagg 403
            ||||||||||||||| ||||||||
Sbjct: 1179 cagccatggcttccttctcgcagg 1156
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>ref|XM_001003355.1| PREDICTED: Mus musculus similar to macrophage activation 2 like
           (LOC673002), mRNA
          Length = 1702

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 380 cagccatggcttcctactcgcagg 403
           ||||||||||||||| ||||||||
Sbjct: 496 cagccatggcttccttctcgcagg 473
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>ref|NM_172777.1| Mus musculus cDNA sequence BC057170 (BC057170), mRNA
          Length = 2715

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 380  cagccatggcttcctactcgcagg 403
            ||||||||||||||| ||||||||
Sbjct: 1188 cagccatggcttccttctcgcagg 1165
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>ref|XM_001006068.1| PREDICTED: Mus musculus macrophage activation 2 like (Mpa2l), mRNA
          Length = 1240

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 380 cagccatggcttcctactcgcagg 403
           ||||||||||||||| ||||||||
Sbjct: 815 cagccatggcttccttctcgcagg 792
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>ref|XM_001005776.1| PREDICTED: Mus musculus similar to guanylate binding protein
           family, member 6 (LOC673529), mRNA
          Length = 798

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 380 cagccatggcttcctactcgcagg 403
           ||||||||||||||| ||||||||
Sbjct: 511 cagccatggcttccttctcgcagg 488
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>ref|XM_001005367.1| PREDICTED: Mus musculus similar to macrophage activation 2 like
           (LOC626578), mRNA
          Length = 1005

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 380 cagccatggcttcctactcgcagg 403
           ||||||||||||||| ||||||||
Sbjct: 508 cagccatggcttccttctcgcagg 485
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>ref|XM_987614.1| PREDICTED: Mus musculus similar to macrophage activation 2 like,
            transcript variant 4 (LOC626578), mRNA
          Length = 5958

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 380  cagccatggcttcctactcgcagg 403
            ||||||||||||||| ||||||||
Sbjct: 2146 cagccatggcttccttctcgcagg 2123
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>ref|XM_987524.1| PREDICTED: Mus musculus similar to macrophage activation 2 like,
            transcript variant 1 (LOC626578), mRNA
          Length = 1579

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 380  cagccatggcttcctactcgcagg 403
            ||||||||||||||| ||||||||
Sbjct: 1178 cagccatggcttccttctcgcagg 1155
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>ref|XM_987723.1| PREDICTED: Mus musculus similar to macrophage activation 2 like,
            transcript variant 7 (LOC626578), mRNA
          Length = 4164

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 380  cagccatggcttcctactcgcagg 403
            ||||||||||||||| ||||||||
Sbjct: 1018 cagccatggcttccttctcgcagg 995
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>ref|XM_987685.1| PREDICTED: Mus musculus similar to macrophage activation 2 like,
           transcript variant 6 (LOC626578), mRNA
          Length = 3976

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 380 cagccatggcttcctactcgcagg 403
           ||||||||||||||| ||||||||
Sbjct: 830 cagccatggcttccttctcgcagg 807
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>ref|XM_987560.1| PREDICTED: Mus musculus similar to macrophage activation 2 like,
           transcript variant 2 (LOC626578), mRNA
          Length = 4077

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 380 cagccatggcttcctactcgcagg 403
           ||||||||||||||| ||||||||
Sbjct: 931 cagccatggcttccttctcgcagg 908
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>ref|XM_987647.1| PREDICTED: Mus musculus similar to macrophage activation 2 like,
            transcript variant 5 (LOC626578), mRNA
          Length = 4224

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 380  cagccatggcttcctactcgcagg 403
            ||||||||||||||| ||||||||
Sbjct: 1078 cagccatggcttccttctcgcagg 1055
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>ref|XM_987820.1| PREDICTED: Mus musculus similar to macrophage activation 2 like,
            transcript variant 10 (LOC626578), mRNA
          Length = 4324

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 380  cagccatggcttcctactcgcagg 403
            ||||||||||||||| ||||||||
Sbjct: 1178 cagccatggcttccttctcgcagg 1155
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>ref|XM_987759.1| PREDICTED: Mus musculus similar to macrophage activation 2 like,
            transcript variant 8 (LOC626578), mRNA
          Length = 4401

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 380  cagccatggcttcctactcgcagg 403
            ||||||||||||||| ||||||||
Sbjct: 1255 cagccatggcttccttctcgcagg 1232
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>ref|XM_987793.1| PREDICTED: Mus musculus similar to macrophage activation 2 like,
            transcript variant 9 (LOC626578), mRNA
          Length = 4317

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 380  cagccatggcttcctactcgcagg 403
            ||||||||||||||| ||||||||
Sbjct: 1171 cagccatggcttccttctcgcagg 1148
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>gb|AC121811.2| Mus musculus BAC clone RP23-453O15 from 5, complete sequence
          Length = 190798

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 308   tcactgtaatggagtagaaa 327
             ||||||||||||||||||||
Sbjct: 26458 tcactgtaatggagtagaaa 26439
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>gb|DQ139262.1| Odontoglossum ringspot virus strain Taiwan, complete genome
          Length = 6611

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 59  ttatgaacattcttacaaaa 78
           ||||||||||||||||||||
Sbjct: 866 ttatgaacattcttacaaaa 885
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>gb|AC146175.1| Pan troglodytes BAC clone CH251-559G23 from Y, complete sequence
          Length = 228185

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 64    aacattcttacaaaattaat 83
             ||||||||||||||||||||
Sbjct: 87265 aacattcttacaaaattaat 87246
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>gb|AC145769.1| Pan troglodytes BAC clone CH251-203H3 from Y, complete sequence
          Length = 165958

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 64    aacattcttacaaaattaat 83
             ||||||||||||||||||||
Sbjct: 25038 aacattcttacaaaattaat 25019
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>gb|BC052867.1| Mus musculus macrophage activation 2 like, mRNA (cDNA clone
           IMAGE:30073198), partial cds
          Length = 1852

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 380 cagccatggcttcctactcgcagg 403
           ||||||||||||||| ||||||||
Sbjct: 398 cagccatggcttccttctcgcagg 375
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>gb|BC114209.1| Mus musculus similar to macrophage activation 2 like, mRNA (cDNA
            clone MGC:118098 IMAGE:4980612), complete cds
          Length = 2631

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 380  cagccatggcttcctactcgcagg 403
            ||||||||||||||| ||||||||
Sbjct: 1176 cagccatggcttccttctcgcagg 1153
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>gb|BC112328.1| Mus musculus similar to macrophage activation 2 like, mRNA (cDNA
            clone MGC:117865 IMAGE:5348193), complete cds
          Length = 2654

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 380  cagccatggcttcctactcgcagg 403
            ||||||||||||||| ||||||||
Sbjct: 1193 cagccatggcttccttctcgcagg 1170
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>emb|AL591506.24| Human DNA sequence from clone RP11-112N13 on chromosome 9 Contains a
              pseudogene similar to reverse transcriptase proteins,
              complete sequence
          Length = 175831

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 298    tcctttttcctcactgtaat 317
              ||||||||||||||||||||
Sbjct: 144946 tcctttttcctcactgtaat 144927
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>emb|AL591175.6| Zebrafish DNA sequence from clone BUSM1-37I06 in linkage group 8
             Contains four novel genes for a protein similar to MHC
             class II alpha chain proteins, the novel retrotransposon
             SUSHIIDR1 similar to SUSHI-ICHI (Fugu rubripes), a
             putative novel gene, a novel gene for a protein similar to
             MHC class I heavy chain proteins and two novel genes for a
             protein similar toMHC class II beta chain, complete
             sequence
          Length = 89232

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 64    aacattcttacaaaattaatacat 87
             |||||| |||||||||||||||||
Sbjct: 59462 aacattgttacaaaattaatacat 59485
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>dbj|AK220567.1| Mus musculus mRNA for mKIAA4245 protein
          Length = 4462

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 380  cagccatggcttcctactcgcagg 403
            ||||||||||||||| ||||||||
Sbjct: 1163 cagccatggcttccttctcgcagg 1140
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>dbj|BS000607.1| Pan troglodytes chromosome Y clone:PTB-081L16, complete sequences
          Length = 178480

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 64    aacattcttacaaaattaat 83
             ||||||||||||||||||||
Sbjct: 46059 aacattcttacaaaattaat 46078
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>dbj|BS000558.1| Pan troglodytes chromosome Y clone:PTB-471H19, complete sequences
          Length = 156402

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 64     aacattcttacaaaattaat 83
              ||||||||||||||||||||
Sbjct: 128190 aacattcttacaaaattaat 128209
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 64     aacattcttacaaaattaat 83
              ||||||||||||||||||||
Sbjct: 559687 aacattcttacaaaattaat 559706
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>gb|AC118584.18| Papio anubis clone rp41-78d16, complete sequence
          Length = 189610

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 115    aacattctaaagaattttgagcta 138
              |||||| |||||||||||||||||
Sbjct: 145900 aacattttaaagaattttgagcta 145923
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>gb|AC117273.41| Papio anubis clone rp41-167h10, complete sequence
          Length = 184931

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 115  aacattctaaagaattttgagcta 138
            |||||| |||||||||||||||||
Sbjct: 4374 aacattttaaagaattttgagcta 4351
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>ref|NM_001039646.1| Mus musculus similar to macrophage activation 2 like (LOC626578),
            mRNA
          Length = 2637

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 380  cagccatggcttcctactcgcagg 403
            ||||||||||||||| ||||||||
Sbjct: 1176 cagccatggcttccttctcgcagg 1153
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>gb|AC091067.6| Homo sapiens chromosome 18, clone RP11-702M18, complete sequence
          Length = 172192

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 235    aacacagaaaaagctcaatg 254
              ||||||||||||||||||||
Sbjct: 128089 aacacagaaaaagctcaatg 128108
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>ref|XM_679264.1| PREDICTED: Danio rerio similar to cardiac calcium channel
           beta-subunit CaB2a (splice variant of the gene CaB2
           (LOC556448), mRNA
          Length = 1791

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 160 tcgcagccttccttcaccaa 179
           ||||||||||||||||||||
Sbjct: 314 tcgcagccttccttcaccaa 295
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>dbj|AK165231.1| Mus musculus 6 days neonate spleen cDNA, RIKEN full-length enriched
            library, clone:F420013N02 product:similar to guanylate
            binding protein [Mus musculus], full insert sequence
          Length = 5044

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 380  cagccatggcttcctactcgcagg 403
            ||||||||||||||| ||||||||
Sbjct: 1187 cagccatggcttccttctcgcagg 1164
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>dbj|AK171913.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
            library, clone:F830019G04 product:hypothetical
            Guanylate-binding protein containing protein, full insert
            sequence
          Length = 4243

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 380  cagccatggcttcctactcgcagg 403
            ||||||||||||||| ||||||||
Sbjct: 2141 cagccatggcttccttctcgcagg 2118
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>gb|AC026788.4| Homo sapiens chromosome 5 clone CTD-2164M17, complete sequence
          Length = 103505

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    aagttatgaacattcttaca 75
             ||||||||||||||||||||
Sbjct: 84976 aagttatgaacattcttaca 84957
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>gb|AC022441.5| Homo sapiens chromosome 5 clone RP11-317O24, complete sequence
          Length = 193057

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    aagttatgaacattcttaca 75
             ||||||||||||||||||||
Sbjct: 29871 aagttatgaacattcttaca 29890
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>gb|AC132308.4| Mus musculus BAC clone RP24-292O13 from chromosome 5, complete sequence
          Length = 184560

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 308    tcactgtaatggagtagaaa 327
              ||||||||||||||||||||
Sbjct: 173664 tcactgtaatggagtagaaa 173645
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>dbj|AK088861.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
            full-length enriched library, clone:E430029F06
            product:similar to GUANYLATE BINDING PROTEIN [Mus
            musculus], full insert sequence
          Length = 2715

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 380  cagccatggcttcctactcgcagg 403
            ||||||||||||||| ||||||||
Sbjct: 1188 cagccatggcttccttctcgcagg 1165
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>dbj|AK017988.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched
           library, clone:5830443L24 product:hypothetical
           Guanylate-binding protein containing protein, full
           insert sequence
          Length = 1670

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 380 cagccatggcttcctactcgcagg 403
           ||||||||||||||| ||||||||
Sbjct: 146 cagccatggcttccttctcgcagg 123
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>gb|BC080665.1| Mus musculus RIKEN cDNA 5830443L24 gene, mRNA (cDNA clone
           IMAGE:4918079), partial cds
          Length = 1910

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 380 cagccatggcttcctactcgcagg 403
           ||||||||||||||| ||||||||
Sbjct: 369 cagccatggcttccttctcgcagg 346
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 13       cttttaagcactgacaagttattttcat 40
                ||||||||||||||||| ||| ||||||
Sbjct: 16268262 cttttaagcactgacaaattagtttcat 16268235
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>gb|AC007275.4|AC007275 Homo sapiens BAC clone RP11-109F19 from Y, complete sequence
          Length = 169904

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 64     aacattcttacaaaattaat 83
              ||||||||||||||||||||
Sbjct: 127192 aacattcttacaaaattaat 127211
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>gb|AC175464.1| Mus musculus BAC clone RP23-129E4 from chromosome 16, complete sequence
          Length = 224605

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 52     tgacaagttatgaacattcttaca 75
              |||||||||| |||||||||||||
Sbjct: 207266 tgacaagttaggaacattcttaca 207289
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>gb|AC008831.7|AC008831 Homo sapiens chromosome 5 clone CTD-2146K10, complete sequence
          Length = 144722

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    aagttatgaacattcttaca 75
             ||||||||||||||||||||
Sbjct: 27222 aagttatgaacattcttaca 27241
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>dbj|AP005067.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0487H05
          Length = 176057

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 13     cttttaagcactgacaagttattttcat 40
              ||||||||||||||||| ||| ||||||
Sbjct: 102749 cttttaagcactgacaaattagtttcat 102722
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>gb|AC119900.7| Mus musculus chromosome 8, clone RP24-235K6, complete sequence
          Length = 174540

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 61     atgaacattcttacaaaatt 80
              ||||||||||||||||||||
Sbjct: 111169 atgaacattcttacaaaatt 111188
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>emb|AL591442.2| Zebrafish DNA sequence from clone BUSM1-228J01 in linkage group 8,
             complete sequence
          Length = 99866

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 64    aacattcttacaaaattaatacat 87
             |||||| |||||||||||||||||
Sbjct: 73177 aacattgttacaaaattaatacat 73154
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>gb|AC113980.29| Mus musculus chromosome 5, clone RP24-63G23, complete sequence
          Length = 193657

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 380    cagccatggcttcctactcgcagg 403
              ||||||||||||||| ||||||||
Sbjct: 173454 cagccatggcttccttctcgcagg 173431
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>gb|BC031475.1| Mus musculus RIKEN cDNA 5830443L24 gene, mRNA (cDNA clone MGC:27754
            IMAGE:2654170), complete cds
          Length = 3387

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 380  cagccatggcttcctactcgcagg 403
            ||||||||||||||| ||||||||
Sbjct: 1170 cagccatggcttccttctcgcagg 1147
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>ref|NM_029509.3| Mus musculus RIKEN cDNA 5830443L24 gene (5830443L24Rik), mRNA
          Length = 1609

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 380 cagccatggcttcctactcgcagg 403
           ||||||||||||||| ||||||||
Sbjct: 844 cagccatggcttccttctcgcagg 821
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>emb|AL591180.4| Zebrafish DNA sequence from clone BUSM1-243A08 in linkage group 8
            Contains a novel and partly predicted gene for a protein
            similar to major histocompatibility complex class II DCB
            gene (mhc2dcb), MHC2DBC related sequence (mhc2dbc-rs),
            part of a novel gene for a protein similar to MHC class
            II alpha chain, the fzd10 gene for frizzled homologue 10
            and a GpC island, complete sequence
          Length = 80272

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 64   aacattcttacaaaattaatacat 87
            |||||| |||||||||||||||||
Sbjct: 5794 aacattgttacaaaattaatacat 5817
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>gb|BC057170.1| Mus musculus cDNA sequence BC057170, mRNA (cDNA clone MGC:68037
            IMAGE:4978410), complete cds
          Length = 2734

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 380  cagccatggcttcctactcgcagg 403
            ||||||||||||||| ||||||||
Sbjct: 1191 cagccatggcttccttctcgcagg 1168
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>gb|DQ295175.1| Mus musculus guanylate binding protein 8 (mGBP8) mRNA, complete cds
          Length = 1609

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 380 cagccatggcttcctactcgcagg 403
           ||||||||||||||| ||||||||
Sbjct: 844 cagccatggcttccttctcgcagg 821
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>dbj|AP004967.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT27L02, TM0144,
             complete sequence
          Length = 89959

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 75    aaaattaatacatgcagaat 94
             ||||||||||||||||||||
Sbjct: 46582 aaaattaatacatgcagaat 46601
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>gb|AC144914.18| Mus musculus chromosome 5, clone RP24-210D14, complete sequence
          Length = 159643

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 380    cagccatggcttcctactcgcagg 403
              ||||||||||||||| ||||||||
Sbjct: 119533 cagccatggcttccttctcgcagg 119510



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 380   cagccatggcttcctactcgcagg 403
             ||||||||||||||| ||||||||
Sbjct: 54522 cagccatggcttccttctcgcagg 54499



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 380   cagccatggcttcctactcgcagg 403
             ||||||||||||||| ||||||||
Sbjct: 16304 cagccatggcttccttctcgcagg 16281
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>gb|M81128.1|MUSGBPMA Mouse putative guanylate binding protein mRNA, complete cds
          Length = 3295

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 380  cagccatggcttcctactcgcagg 403
            ||||||||||||||| ||||||||
Sbjct: 1179 cagccatggcttccttctcgcagg 1156


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,563,475
Number of Sequences: 3902068
Number of extensions: 4563475
Number of successful extensions: 87673
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87492
Number of HSP's gapped (non-prelim): 181
length of query: 409
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 387
effective length of database: 17,147,199,772
effective search space: 6635966311764
effective search space used: 6635966311764
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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