ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl31a08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M90663.1|WHTE1A Wheat ubiquitin activating enzyme (E1) mRNA, ... 416 e-113
2gb|M55604.1|WHTUBA1 T.aestivum ubiquitin activating enzyme E1 (U... 210 2e-51
3gb|BT019213.1| Zea mays clone Contig886.F mRNA sequence 107 3e-20
4dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-09
5dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-09
6dbj|AK111781.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 1e-09
7dbj|AK111741.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 1e-09
8dbj|AK104898.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 1e-09
9gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 72 1e-09
10gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 72 1e-09
11emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa... 72 1e-09
12emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa... 72 1e-09
13emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa... 72 1e-09
14ref|NM_128566.3| Arabidopsis thaliana ATUBA1; ubiquitin activati... 44 0.33
15gb|AC004165.3| Arabidopsis thaliana chromosome 2 clone T27E13 ma... 44 0.33
16gb|AY090248.1| Arabidopsis thaliana At2g30110/T27E13.15 mRNA, co... 44 0.33
17dbj|AK220705.1| Arabidopsis thaliana mRNA for putative ubiquitin... 44 0.33
18gb|BT006363.1| Arabidopsis thaliana At2g30110/T27E13.15 gene, co... 44 0.33
19gb|U80808.1|ATU80808 Arabidopsis thaliana ubiquitin activating e... 44 0.33
20emb|BX821151.1|CNS0AAA1 Arabidopsis thaliana Full-length cDNA Co... 44 0.33
21emb|BX820519.1|CNS0A9M5 Arabidopsis thaliana Full-length cDNA Co... 44 0.33
22emb|BX820277.1|CNS0A9OY Arabidopsis thaliana Full-length cDNA Co... 44 0.33
23emb|AJ299395.1|CAR299395 Cicer arietinum partial mRNA for ubiqui... 44 0.33
24gb|AC115722.12| Mus musculus chromosome 5, clone RP23-16N23, com... 40 5.2
25ref|XM_752686.1| Ustilago maydis 521 hypothetical protein (UM016... 40 5.2
26ref|XM_753433.1| Ustilago maydis 521 hypothetical protein (UM023... 40 5.2
27gb|AE014075.1| Escherichia coli CFT073, complete genome 40 5.2
28gb|CP000243.1| Escherichia coli UTI89, complete genome 40 5.2
29dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010 40 5.2
30gb|AC008125.9| Homo sapiens 12 BAC RPCI11-25E2 (Roswell Park Can... 40 5.2
31gb|AF231794.1|AF231794 Pinus taeda clone LC15b2 microsatellite s... 40 5.2
32emb|BX005055.5| Zebrafish DNA sequence from clone CH211-188N23 i... 40 5.2
33emb|Z65094.1|HS19B9F H.sapiens CpG island DNA genomic Mse1 fragm... 40 5.2
34emb|CR847870.16| Zebrafish DNA sequence from clone DKEY-170G11 i... 40 5.2
35emb|AM236324.1| Escherichia coli genome fragment containing the ... 40 5.2
36gb|M90664.1|WHTE1B Wheat ubiquitin activating enzyme (E1) mRNA, ... 40 5.2
37dbj|AB073314.1| Ciona intestinalis CiGi1 gene for G protein alph... 40 5.2 
>gb|M90663.1|WHTE1A Wheat ubiquitin activating enzyme (E1) mRNA, complete cds
          Length = 3695

 Score =  416 bits (210), Expect = e-113
 Identities = 320/355 (90%), Gaps = 10/355 (2%)
 Strand = Plus / Minus

                                                                        
Query: 42   ttttagttgtaaacgcatcatgcaaca--------gatgatgttgtgcgt-gtcttgtga 92
            |||||||||| ||||||||||||||||        ||||||||||||| | |||| ||||
Sbjct: 3687 ttttagttgtgaacgcatcatgcaacaattatcaagatgatgttgtgcctagtctcgtga 3628

                                                                        
Query: 93   atcgtgatgtctggtaacaactccagatcagcccccaatgatccaatcgacatcgagatg 152
            || || ||||||||||||||| | |||||||||||||||||||| ||||||||| |||||
Sbjct: 3627 atagttatgtctggtaacaacccgagatcagcccccaatgatccgatcgacatcaagatg 3568

                                                                        
Query: 153  gtagaaaggaaaa-tcagtcagtaatgtggcttaagcccccactcagcttacagtcacta 211
            ||||||||||||| ||||||  ||||||||||||||||||||||||||||||| ||||||
Sbjct: 3567 gtagaaaggaaaaatcagtcgataatgtggcttaagcccccactcagcttacaatcacta 3508

                                                                        
Query: 212  atgcaactcatgacttgtcagtcgatcaggcatgaccaaccacaagatcatgtgaacaca 271
            |||| ||||||||| ||||||||||||  |||||||||||||||||||||||| ||| ||
Sbjct: 3507 atgcgactcatgacatgtcagtcgatccagcatgaccaaccacaagatcatgtaaacgca 3448

                                                                        
Query: 272  gatgaagcgcttcttcagcggaagtggacagacacaagcgggatgtcgacatcgttgtca 331
            || | |||||||||||||||||||| ||| |||||||| |||||||||||||||||||| 
Sbjct: 3447 gaaggagcgcttcttcagcggaagtagaccgacacaagtgggatgtcgacatcgttgtcg 3388

                                                                   
Query: 332  tcgtcatcctcacaggccaccacgacgtcgagatgacgccggtaagagggcacct 386
            ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 3387 tcgtcatcctcacaggccaccacaacgtcgagatgacgccggtaagagggcacct 3333
to top
>gb|M55604.1|WHTUBA1 T.aestivum ubiquitin activating enzyme E1 (UBA1) gene, complete cds
          Length = 3586

 Score =  210 bits (106), Expect = 2e-51
 Identities = 145/158 (91%)
 Strand = Plus / Minus

                                                                        
Query: 229  tcagtcgatcaggcatgaccaaccacaagatcatgtgaacacagatgaagcgcttcttca 288
            ||||| ||||| |||||||||||||||||||||| | ||| |||| | ||||||||||||
Sbjct: 3395 tcagtagatcaagcatgaccaaccacaagatcatttaaacgcagaaggagcgcttcttca 3336

                                                                        
Query: 289  gcggaagtggacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggc 348
            |||||||| ||| |||||||| |||||||||||||| ||||| |||||||||||||| ||
Sbjct: 3335 gcggaagtagaccgacacaagtgggatgtcgacatcattgtcgtcgtcatcctcacacgc 3276

                                                  
Query: 349  caccacgacgtcgagatgacgccggtaagagggcacct 386
            ||||||||||||||||||||||||||||||||||||||
Sbjct: 3275 caccacgacgtcgagatgacgccggtaagagggcacct 3238



 Score =  174 bits (88), Expect = 1e-40
 Identities = 150/169 (88%), Gaps = 10/169 (5%)
 Strand = Plus / Minus

                                                                        
Query: 39   caattttagttgtaaacgcatcatgcaaca--------gatgatgttgtgcgt-gtcttg 89
            ||||||||| ||||||||||||||||||||        ||||||||||||| | |||| |
Sbjct: 3571 caattttagctgtaaacgcatcatgcaacaattatcaagatgatgttgtgcctagtctcg 3512

                                                                        
Query: 90   tgaatcgtgatgtctggtaacaactccagatcagcccccaatgatccaatcgacatcga- 148
            |||||| ||||||||||||||||| | |||||||||||||||||||| ||||||||| | 
Sbjct: 3511 tgaatcatgatgtctggtaacaacccgagatcagcccccaatgatccgatcgacatcaaa 3452

                                                             
Query: 149  gatggtagaaaggaaaatcagtcagtaatgtggcttaagcccccactca 197
            ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 3451 gatggtagaaaggaaaatcagtcggtaatgtggcttaagcccccactca 3403
to top
>gb|BT019213.1| Zea mays clone Contig886.F mRNA sequence
          Length = 836

 Score =  107 bits (54), Expect = 3e-20
 Identities = 78/86 (90%)
 Strand = Plus / Minus

                                                                       
Query: 301 agacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccaccacgacgtc 360
           ||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct: 768 agacacaagcgggatgtcgacgtcattgtcatcgtcatcctcacaggccaccacaacgtc 709

                                     
Query: 361 gagatgacgccggtaagagggcacct 386
            ||||| || ||||| || |||||||
Sbjct: 708 cagatggcggcggtaggaaggcacct 683
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
              complete sequence
          Length = 27566993

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 66/76 (86%)
 Strand = Plus / Plus

                                                                          
Query: 311    gggatgtcgacatcgttgtcatcgtcatcctcacaggccaccacgacgtcgagatgacgc 370
              |||||||| || ||||||||||| || |||||||| |||||||| ||||| ||||| |||
Sbjct: 312177 gggatgtcaacgtcgttgtcatcatcgtcctcacaagccaccaccacgtcaagatggcgc 312236

                              
Query: 371    cggtaagagggcacct 386
              ||||| | ||||||||
Sbjct: 312237 cggtatgggggcacct 312252



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                  
Query: 170    tcagtaatgtggcttaagcccccactcagcttacag 205
              ||||||||||||||||| |||||||| || ||||||
Sbjct: 312039 tcagtaatgtggcttaaacccccacttagtttacag 312074
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 66/76 (86%)
 Strand = Plus / Plus

                                                                          
Query: 311    gggatgtcgacatcgttgtcatcgtcatcctcacaggccaccacgacgtcgagatgacgc 370
              |||||||| || ||||||||||| || |||||||| |||||||| ||||| ||||| |||
Sbjct: 295075 gggatgtcaacgtcgttgtcatcatcgtcctcacaagccaccaccacgtcaagatggcgc 295134

                              
Query: 371    cggtaagagggcacct 386
              ||||| | ||||||||
Sbjct: 295135 cggtatgggggcacct 295150



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                  
Query: 170    tcagtaatgtggcttaagcccccactcagcttacag 205
              ||||||||||||||||| |||||||| || ||||||
Sbjct: 294937 tcagtaatgtggcttaaacccccacttagtttacag 294972
to top
>dbj|AK111781.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083B12, full
            insert sequence
          Length = 3724

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 66/76 (86%)
 Strand = Plus / Minus

                                                                        
Query: 311  gggatgtcgacatcgttgtcatcgtcatcctcacaggccaccacgacgtcgagatgacgc 370
            |||||||| || ||||||||||| || |||||||| |||||||| ||||| ||||| |||
Sbjct: 3442 gggatgtcaacgtcgttgtcatcatcgtcctcacaagccaccaccacgtcaagatggcgc 3383

                            
Query: 371  cggtaagagggcacct 386
            ||||| | ||||||||
Sbjct: 3382 cggtatgggggcacct 3367



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 170  tcagtaatgtggcttaagcccccactcagcttacag 205
            ||||||||||||||||| |||||||| || ||||||
Sbjct: 3580 tcagtaatgtggcttaaacccccacttagtttacag 3545
to top
>dbj|AK111741.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049I12, full
            insert sequence
          Length = 1533

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 66/76 (86%)
 Strand = Plus / Minus

                                                                        
Query: 311  gggatgtcgacatcgttgtcatcgtcatcctcacaggccaccacgacgtcgagatgacgc 370
            |||||||| || ||||||||||| || |||||||| |||||||| ||||| ||||| |||
Sbjct: 1335 gggatgtcaacgtcgttgtcatcatcgtcctcacaagccaccaccacgtcaagatggcgc 1276

                            
Query: 371  cggtaagagggcacct 386
            ||||| | ||||||||
Sbjct: 1275 cggtatgggggcacct 1260



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 170  tcagtaatgtggcttaagcccccactcagcttacag 205
            ||||||||||||||||| |||||||| || ||||||
Sbjct: 1473 tcagtaatgtggcttaaacccccacttagtttacag 1438
to top
>dbj|AK104898.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-C03, full
            insert sequence
          Length = 1510

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 66/76 (86%)
 Strand = Plus / Minus

                                                                        
Query: 311  gggatgtcgacatcgttgtcatcgtcatcctcacaggccaccacgacgtcgagatgacgc 370
            |||||||| || ||||||||||| || |||||||| |||||||| ||||| ||||| |||
Sbjct: 1226 gggatgtcaacgtcgttgtcatcatcgtcctcacaagccaccaccacgtcaagatggcgc 1167

                            
Query: 371  cggtaagagggcacct 386
            ||||| | ||||||||
Sbjct: 1166 cggtatgggggcacct 1151



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 170  tcagtaatgtggcttaagcccccactcagcttacag 205
            ||||||||||||||||| |||||||| || ||||||
Sbjct: 1364 tcagtaatgtggcttaaacccccacttagtttacag 1329
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 66/76 (86%)
 Strand = Plus / Plus

                                                                          
Query: 311    gggatgtcgacatcgttgtcatcgtcatcctcacaggccaccacgacgtcgagatgacgc 370
              |||||||| || ||||||||||| || |||||||| |||||||| ||||| ||||| |||
Sbjct: 295075 gggatgtcaacgtcgttgtcatcatcgtcctcacaagccaccaccacgtcaagatggcgc 295134

                              
Query: 371    cggtaagagggcacct 386
              ||||| | ||||||||
Sbjct: 295135 cggtatgggggcacct 295150



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                  
Query: 170    tcagtaatgtggcttaagcccccactcagcttacag 205
              ||||||||||||||||| |||||||| || ||||||
Sbjct: 294937 tcagtaatgtggcttaaacccccacttagtttacag 294972
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 66/76 (86%)
 Strand = Plus / Plus

                                                                          
Query: 311    gggatgtcgacatcgttgtcatcgtcatcctcacaggccaccacgacgtcgagatgacgc 370
              |||||||| || ||||||||||| || |||||||| |||||||| ||||| ||||| |||
Sbjct: 312177 gggatgtcaacgtcgttgtcatcatcgtcctcacaagccaccaccacgtcaagatggcgc 312236

                              
Query: 371    cggtaagagggcacct 386
              ||||| | ||||||||
Sbjct: 312237 cggtatgggggcacct 312252



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                  
Query: 170    tcagtaatgtggcttaagcccccactcagcttacag 205
              ||||||||||||||||| |||||||| || ||||||
Sbjct: 312039 tcagtaatgtggcttaaacccccacttagtttacag 312074
to top
>emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa0032J07 of library OSJNBa
            from chromosome 11 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 160673

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 66/76 (86%)
 Strand = Plus / Minus

                                                                        
Query: 311  gggatgtcgacatcgttgtcatcgtcatcctcacaggccaccacgacgtcgagatgacgc 370
            |||||||| || ||||||||||| || |||||||| |||||||| ||||| ||||| |||
Sbjct: 9918 gggatgtcaacgtcgttgtcatcatcgtcctcacaagccaccaccacgtcaagatggcgc 9859

                            
Query: 371  cggtaagagggcacct 386
            ||||| | ||||||||
Sbjct: 9858 cggtatgggggcacct 9843



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                 
Query: 170   tcagtaatgtggcttaagcccccactcagcttacag 205
             ||||||||||||||||| |||||||| || ||||||
Sbjct: 10056 tcagtaatgtggcttaaacccccacttagtttacag 10021
to top
>emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa0052H10 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 152222

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 66/76 (86%)
 Strand = Plus / Plus

                                                                         
Query: 311   gggatgtcgacatcgttgtcatcgtcatcctcacaggccaccacgacgtcgagatgacgc 370
             |||||||| || ||||||||||| || |||||||| |||||||| ||||| ||||| |||
Sbjct: 45228 gggatgtcaacgtcgttgtcatcatcgtcctcacaagccaccaccacgtcaagatggcgc 45287

                             
Query: 371   cggtaagagggcacct 386
             ||||| | ||||||||
Sbjct: 45288 cggtatgggggcacct 45303



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                 
Query: 170   tcagtaatgtggcttaagcccccactcagcttacag 205
             ||||||||||||||||| |||||||| || ||||||
Sbjct: 45090 tcagtaatgtggcttaaacccccacttagtttacag 45125
to top
>emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa
            from chromosome 11 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 164143

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 66/76 (86%)
 Strand = Plus / Plus

                                                                        
Query: 311  gggatgtcgacatcgttgtcatcgtcatcctcacaggccaccacgacgtcgagatgacgc 370
            |||||||| || ||||||||||| || |||||||| |||||||| ||||| ||||| |||
Sbjct: 2393 gggatgtcaacgtcgttgtcatcatcgtcctcacaagccaccaccacgtcaagatggcgc 2452

                            
Query: 371  cggtaagagggcacct 386
            ||||| | ||||||||
Sbjct: 2453 cggtatgggggcacct 2468



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                
Query: 170  tcagtaatgtggcttaagcccccactcagcttacag 205
            ||||||||||||||||| |||||||| || ||||||
Sbjct: 2255 tcagtaatgtggcttaaacccccacttagtttacag 2290
to top
>ref|NM_128566.3| Arabidopsis thaliana ATUBA1; ubiquitin activating enzyme AT2G30110
            (ATUBA1) mRNA, complete cds
          Length = 3626

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 317  tcgacatcgttgtcatcgtcatcctcacaggccaccac 354
            ||||| || |||||||| ||||||||||| ||||||||
Sbjct: 3335 tcgacgtcattgtcatcttcatcctcacaagccaccac 3298
to top
>gb|AC004165.3| Arabidopsis thaliana chromosome 2 clone T27E13 map m283, complete
             sequence
          Length = 83796

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 317   tcgacatcgttgtcatcgtcatcctcacaggccaccac 354
             ||||| || |||||||| ||||||||||| ||||||||
Sbjct: 52977 tcgacgtcattgtcatcttcatcctcacaagccaccac 52940
to top
>gb|AY090248.1| Arabidopsis thaliana At2g30110/T27E13.15 mRNA, complete cds
          Length = 3561

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 317  tcgacatcgttgtcatcgtcatcctcacaggccaccac 354
            ||||| || |||||||| ||||||||||| ||||||||
Sbjct: 3296 tcgacgtcattgtcatcttcatcctcacaagccaccac 3259
to top
>dbj|AK220705.1| Arabidopsis thaliana mRNA for putative ubiquitin activating enzyme,
           complete cds, clone: RAFL22-01-B01
          Length = 474

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 317 tcgacatcgttgtcatcgtcatcctcacaggccaccac 354
           ||||| || |||||||| ||||||||||| ||||||||
Sbjct: 183 tcgacgtcattgtcatcttcatcctcacaagccaccac 146
to top
>gb|BT006363.1| Arabidopsis thaliana At2g30110/T27E13.15 gene, complete cds
          Length = 3243

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 317  tcgacatcgttgtcatcgtcatcctcacaggccaccac 354
            ||||| || |||||||| ||||||||||| ||||||||
Sbjct: 3212 tcgacgtcattgtcatcttcatcctcacaagccaccac 3175
to top
>gb|U80808.1|ATU80808 Arabidopsis thaliana ubiquitin activating enzyme (UBA1) gene,
            complete cds
          Length = 3346

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 317  tcgacatcgttgtcatcgtcatcctcacaggccaccac 354
            ||||| || |||||||| ||||||||||| ||||||||
Sbjct: 3309 tcgacgtcattgtcatcttcatcctcacaagccaccac 3272
to top
>emb|BX821151.1|CNS0AAA1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL1ZD10 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 646

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 317 tcgacatcgttgtcatcgtcatcctcacaggccaccac 354
           ||||| || |||||||| ||||||||||| ||||||||
Sbjct: 365 tcgacgtcattgtcatcttcatcctcacaagccaccac 328
to top
>emb|BX820519.1|CNS0A9M5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH43ZE11 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1375

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 317  tcgacatcgttgtcatcgtcatcctcacaggccaccac 354
            ||||| || |||||||| ||||||||||| ||||||||
Sbjct: 1142 tcgacgtcattgtcatcttcatcctcacaagccaccac 1105
to top
>emb|BX820277.1|CNS0A9OY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH16ZF09 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 930

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 317 tcgacatcgttgtcatcgtcatcctcacaggccaccac 354
           ||||| || |||||||| ||||||||||| ||||||||
Sbjct: 648 tcgacgtcattgtcatcttcatcctcacaagccaccac 611
to top
>emb|AJ299395.1|CAR299395 Cicer arietinum partial mRNA for ubiquitin activating enzyme E1
           (ORF), clone CanUBC-1
          Length = 807

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 326 ttgtcatcgtcatcctcacaggccac 351
           ||||||||||||||||| ||||||||
Sbjct: 484 ttgtcatcgtcatcctcgcaggccac 459
to top
>gb|AC115722.12| Mus musculus chromosome 5, clone RP23-16N23, complete sequence
          Length = 194380

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 320    acatcgttgtcatcgtcatc 339
              ||||||||||||||||||||
Sbjct: 158321 acatcgttgtcatcgtcatc 158340
to top
>ref|XM_752686.1| Ustilago maydis 521 hypothetical protein (UM01632.1) partial mRNA
          Length = 1047

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 316 gtcgacatcgttgtcatcgtcatc 339
           |||| |||||||||||||||||||
Sbjct: 585 gtcgtcatcgttgtcatcgtcatc 562
to top
>ref|XM_753433.1| Ustilago maydis 521 hypothetical protein (UM02379.1) partial mRNA
          Length = 3270

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 341  tcacaggccaccacgacgtc 360
            ||||||||||||||||||||
Sbjct: 2191 tcacaggccaccacgacgtc 2210
to top
>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 86      cttgtgaatcgtgatgtctg 105
               ||||||||||||||||||||
Sbjct: 2258336 cttgtgaatcgtgatgtctg 2258355
to top
>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 86      cttgtgaatcgtgatgtctg 105
               ||||||||||||||||||||
Sbjct: 2109514 cttgtgaatcgtgatgtctg 2109533
to top
>dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010
          Length = 2039961

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 274     tgaagcgcttcttcagcgga 293
               ||||||||||||||||||||
Sbjct: 1983686 tgaagcgcttcttcagcgga 1983705
to top
>gb|AC008125.9| Homo sapiens 12 BAC RPCI11-25E2 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 189286

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 147    gagatggtagaaaggaaaat 166
              ||||||||||||||||||||
Sbjct: 153914 gagatggtagaaaggaaaat 153933
to top
>gb|AF231794.1|AF231794 Pinus taeda clone LC15b2 microsatellite sequence
          Length = 254

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 316 gtcgacatcgttgtcatcgtcatcctca 343
           |||| |||||| ||||||||||||||||
Sbjct: 231 gtcgtcatcgtcgtcatcgtcatcctca 204
to top
>emb|BX005055.5| Zebrafish DNA sequence from clone CH211-188N23 in linkage group 23,
             complete sequence
          Length = 156598

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     gaacaaacataaaacatgca 21
             ||||||||||||||||||||
Sbjct: 96241 gaacaaacataaaacatgca 96260
to top
>emb|Z65094.1|HS19B9F H.sapiens CpG island DNA genomic Mse1 fragment, clone 19b9, forward
           read cpg19b9.ft1a
          Length = 264

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 156 gaaaggaaaatcagtcagta 175
           ||||||||||||||||||||
Sbjct: 169 gaaaggaaaatcagtcagta 188
to top
>emb|CR847870.16| Zebrafish DNA sequence from clone DKEY-170G11 in linkage group 22,
              complete sequence
          Length = 237985

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 3      aacaaacataaaacatgcat 22
              ||||||||||||||||||||
Sbjct: 155174 aacaaacataaaacatgcat 155193
to top
>emb|AM236324.1| Escherichia coli genome fragment containing the yersiniabactin, cob and
             pdu gene clusters, strain A0 34/86
          Length = 84189

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    cttgtgaatcgtgatgtctg 105
             ||||||||||||||||||||
Sbjct: 54791 cttgtgaatcgtgatgtctg 54810
to top
>gb|M90664.1|WHTE1B Wheat ubiquitin activating enzyme (E1) mRNA, complete cds
          Length = 3588

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 53/64 (82%)
 Strand = Plus / Minus

                                                                        
Query: 288  agcggaagtggacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacagg 347
            |||||||||  || ||||| || ||||||||||| ||||| || || || ||||| ||||
Sbjct: 3345 agcggaagtaaaccgacacgagggggatgtcgacgtcgttctcgtcctcgtcctcgcagg 3286

                
Query: 348  ccac 351
            ||||
Sbjct: 3285 ccac 3282
to top
>dbj|AB073314.1| Ciona intestinalis CiGi1 gene for G protein alpha subunit Gi splicing
            variants CiGi1a and CiGi1b, partial cds
          Length = 2192

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 2    gaacaaacataaaacatgca 21
            ||||||||||||||||||||
Sbjct: 1591 gaacaaacataaaacatgca 1572


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,857,410
Number of Sequences: 3902068
Number of extensions: 2857410
Number of successful extensions: 57511
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57343
Number of HSP's gapped (non-prelim): 164
length of query: 386
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 364
effective length of database: 17,147,199,772
effective search space: 6241580717008
effective search space used: 6241580717008
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top