Clone Name | rbastl31a07 |
---|---|
Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | MUA3_CAEEL (P34576) Transmembrane cell adhesion receptor mua-3 p... | 33 | 0.19 | 2 | PIP25_ARATH (Q9SV31) Probable aquaporin PIP2.5 (Plasma membrane ... | 29 | 2.7 | 3 | Y9128_RHOBA (Q7UM18) UPF0314 protein RB9128 | 29 | 3.6 | 4 | OPS6_DROME (O01668) Opsin Rh6 (Rhodopsin Rh6, long-wavelength) | 28 | 6.1 | 5 | GALE_NEIGO (Q05026) UDP-glucose 4-epimerase (EC 5.1.3.2) (Galact... | 28 | 6.1 |
---|
>MUA3_CAEEL (P34576) Transmembrane cell adhesion receptor mua-3 precursor| (Muscle attachment abnormal protein 3) Length = 3767 Score = 33.1 bits (74), Expect = 0.19 Identities = 22/86 (25%), Positives = 38/86 (44%) Frame = -2 Query: 274 DPRSTTTE*SASCRLKENPSS*FLQTINK*TPESIFQSVYRVLRGQESFGARVILSFLNS 95 D T E C N ++ T ++ E ++V + L G ++ G + + LN Sbjct: 553 DSSPTALEPGRKCVQANNEAATTSTTTSQCIKEKNGETVCKCLLGYKNVGTK---THLNC 609 Query: 94 FVYGRSTPCYQKMIRECWPLFTCFSE 17 + R+ PC + +C P+ CFSE Sbjct: 610 QMEKRANPCQDYSLHDCDPVAECFSE 635
>PIP25_ARATH (Q9SV31) Probable aquaporin PIP2.5 (Plasma membrane intrinsic| protein 2d) (PIP2d) Length = 286 Score = 29.3 bits (64), Expect = 2.7 Identities = 15/42 (35%), Positives = 23/42 (54%) Frame = -3 Query: 270 QDPPPQSSQPLAD*KKIPALSFFRLLISRLQSLFFSLYIEFL 145 QDPPP+ PL D ++ SF+R LI+ + LY+ + Sbjct: 18 QDPPPE---PLFDATELGKWSFYRALIAEFIATLLFLYVTIM 56
>Y9128_RHOBA (Q7UM18) UPF0314 protein RB9128| Length = 201 Score = 28.9 bits (63), Expect = 3.6 Identities = 10/22 (45%), Positives = 13/22 (59%) Frame = -1 Query: 137 REFWCPCHSFIPKFICIWQKHS 72 R FWC C S++P IW H+ Sbjct: 44 RRFWCECGSWVPWSWDIWTAHN 65
>OPS6_DROME (O01668) Opsin Rh6 (Rhodopsin Rh6, long-wavelength)| Length = 369 Score = 28.1 bits (61), Expect = 6.1 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = -2 Query: 100 NSFVYGRSTPCYQKMIRECWPLFTCFSEHL 11 N VYG S P Y++++RE P C + L Sbjct: 323 NPIVYGLSHPKYKQVLREKMPCLACGKDDL 352
>GALE_NEIGO (Q05026) UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase)| (UDP-galactose 4-epimerase) Length = 338 Score = 28.1 bits (61), Expect = 6.1 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = -2 Query: 91 VYGRSTPCYQKMIRECWPLFTCFSEH 14 + GR+ P YQ IR+C L FSEH Sbjct: 47 ITGRNIPFYQGDIRDCQILRQIFSEH 72 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,720,239 Number of Sequences: 219361 Number of extensions: 591302 Number of successful extensions: 1332 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 1319 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1332 length of database: 80,573,946 effective HSP length: 68 effective length of database: 65,657,398 effective search space used: 1575777552 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)