ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl31a07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MUA3_CAEEL (P34576) Transmembrane cell adhesion receptor mua-3 p... 33 0.19
2PIP25_ARATH (Q9SV31) Probable aquaporin PIP2.5 (Plasma membrane ... 29 2.7
3Y9128_RHOBA (Q7UM18) UPF0314 protein RB9128 29 3.6
4OPS6_DROME (O01668) Opsin Rh6 (Rhodopsin Rh6, long-wavelength) 28 6.1
5GALE_NEIGO (Q05026) UDP-glucose 4-epimerase (EC 5.1.3.2) (Galact... 28 6.1

>MUA3_CAEEL (P34576) Transmembrane cell adhesion receptor mua-3 precursor|
           (Muscle attachment abnormal protein 3)
          Length = 3767

 Score = 33.1 bits (74), Expect = 0.19
 Identities = 22/86 (25%), Positives = 38/86 (44%)
 Frame = -2

Query: 274 DPRSTTTE*SASCRLKENPSS*FLQTINK*TPESIFQSVYRVLRGQESFGARVILSFLNS 95
           D   T  E    C    N ++    T ++   E   ++V + L G ++ G +   + LN 
Sbjct: 553 DSSPTALEPGRKCVQANNEAATTSTTTSQCIKEKNGETVCKCLLGYKNVGTK---THLNC 609

Query: 94  FVYGRSTPCYQKMIRECWPLFTCFSE 17
            +  R+ PC    + +C P+  CFSE
Sbjct: 610 QMEKRANPCQDYSLHDCDPVAECFSE 635



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>PIP25_ARATH (Q9SV31) Probable aquaporin PIP2.5 (Plasma membrane intrinsic|
           protein 2d) (PIP2d)
          Length = 286

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 270 QDPPPQSSQPLAD*KKIPALSFFRLLISRLQSLFFSLYIEFL 145
           QDPPP+   PL D  ++   SF+R LI+   +    LY+  +
Sbjct: 18  QDPPPE---PLFDATELGKWSFYRALIAEFIATLLFLYVTIM 56



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>Y9128_RHOBA (Q7UM18) UPF0314 protein RB9128|
          Length = 201

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 137 REFWCPCHSFIPKFICIWQKHS 72
           R FWC C S++P    IW  H+
Sbjct: 44  RRFWCECGSWVPWSWDIWTAHN 65



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>OPS6_DROME (O01668) Opsin Rh6 (Rhodopsin Rh6, long-wavelength)|
          Length = 369

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 100 NSFVYGRSTPCYQKMIRECWPLFTCFSEHL 11
           N  VYG S P Y++++RE  P   C  + L
Sbjct: 323 NPIVYGLSHPKYKQVLREKMPCLACGKDDL 352



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>GALE_NEIGO (Q05026) UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase)|
           (UDP-galactose 4-epimerase)
          Length = 338

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 91  VYGRSTPCYQKMIRECWPLFTCFSEH 14
           + GR+ P YQ  IR+C  L   FSEH
Sbjct: 47  ITGRNIPFYQGDIRDCQILRQIFSEH 72


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,720,239
Number of Sequences: 219361
Number of extensions: 591302
Number of successful extensions: 1332
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1332
length of database: 80,573,946
effective HSP length: 68
effective length of database: 65,657,398
effective search space used: 1575777552
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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